RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 RNF141Q8WVD5 230 aa4.82□□□□□ -1.64
CUX1-220ENST00000607092 SNAPC3Q92966 411 aa4.82□□□□□ -1.64
CUX1-220ENST00000607092 CENPOQ9BU64 300 aa4.82□□□□□ -1.64
CUX1-220ENST00000607092 SELENOIQ9C0D9 397 aa4.82□□□□□ -1.64
CUX1-220ENST00000607092 ALX4Q9H161 411 aaPredicted RBP4.82□□□□□ -1.64
CUX1-220ENST00000607092 FBXL15Q9H469 300 aa4.82□□□□□ -1.64
CUX1-220ENST00000607092 ISG20L2Q9H9L3 353 aaKnown RBP4.82□□□□□ -1.64
CUX1-220ENST00000607092 ZNF355PQ9NSJ1 428 aa4.82□□□□□ -1.64
CUX1-220ENST00000607092 BABAM2Q9NXR7 383 aa4.82□□□□□ -1.64
CUX1-220ENST00000607092 PSORS1C1Q9UIG5 152 aa4.82□□□□□ -1.64
CUX1-220ENST00000607092 PLECQ15149 4684 aaKnown RBP4.81□□□□□ -1.64
CUX1-220ENST00000607092 CCDC160A6NGH7 325 aa4.81□□□□□ -1.64
CUX1-220ENST00000607092 E9PI62 339 aa4.81□□□□□ -1.64
CUX1-220ENST00000607092 H0YJW9 148 aa4.81□□□□□ -1.64
CUX1-220ENST00000607092 CREBL2O60519 120 aaPredicted RBP4.81□□□□□ -1.64
CUX1-220ENST00000607092 TUSC2O75896 110 aa4.81□□□□□ -1.64
CUX1-220ENST00000607092 NDUFB8O95169 186 aa4.81□□□□□ -1.64
CUX1-220ENST00000607092 IGFBP3P17936 291 aaPredicted RBP4.81□□□□□ -1.64
CUX1-220ENST00000607092 ZBTB25P24278 435 aa4.81□□□□□ -1.64
CUX1-220ENST00000607092 CNTFRP26992 372 aa4.81□□□□□ -1.64
CUX1-220ENST00000607092 RPEL1Q2QD12 228 aa4.81□□□□□ -1.64
CUX1-220ENST00000607092 DMKNQ6E0U4 476 aaPredicted RBP4.81□□□□□ -1.64
CUX1-220ENST00000607092 XAF1Q6GPH4 301 aa4.81□□□□□ -1.64
CUX1-220ENST00000607092 SLC16A13Q7RTY0 426 aa4.81□□□□□ -1.64
CUX1-220ENST00000607092 PDPNQ86YL7 162 aa4.81□□□□□ -1.64
CUX1-220ENST00000607092 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.81□□□□□ -1.64
CUX1-220ENST00000607092 OR52L2PQ8NGH6 319 aa4.81□□□□□ -1.64
CUX1-220ENST00000607092 OR52I1Q8NGK6 324 aa4.81□□□□□ -1.64
CUX1-220ENST00000607092 RAB2BQ8WUD1 216 aa4.81□□□□□ -1.64
CUX1-220ENST00000607092 IL1F10Q8WWZ1 152 aa4.81□□□□□ -1.64
CUX1-220ENST00000607092 DDB2Q92466 427 aa4.81□□□□□ -1.64
CUX1-220ENST00000607092 RGP1Q92546 391 aaPredicted RBP4.81□□□□□ -1.64
CUX1-220ENST00000607092 MUL1Q969V5 352 aa4.81□□□□□ -1.64
CUX1-220ENST00000607092 Q96M66 194 aa4.81□□□□□ -1.64
CUX1-220ENST00000607092 MS4A10Q96PG2 267 aa4.81□□□□□ -1.64
CUX1-220ENST00000607092 CHMP1AQ9HD42 196 aaPredicted RBP4.81□□□□□ -1.64
CUX1-220ENST00000607092 FGF20Q9NP95 211 aaPredicted RBP4.81□□□□□ -1.64
CUX1-220ENST00000607092 FKBP14Q9NWM8 211 aa4.81□□□□□ -1.64
CUX1-220ENST00000607092 METTL1Q9UBP6 276 aaKnown RBP4.81□□□□□ -1.64
CUX1-220ENST00000607092 PEF1Q9UBV8 284 aaKnown RBP4.81□□□□□ -1.64
CUX1-220ENST00000607092 ZNF221Q9UK13 617 aa4.81□□□□□ -1.64
CUX1-220ENST00000607092 EXOSC1Q9Y3B2 195 aaKnown RBP4.81□□□□□ -1.64
CUX1-220ENST00000607092 ALMS1Q8TCU4 4167 aa4.81□□□□□ -1.64
CUX1-220ENST00000607092 TRBV5-5A0A0J9YX44 114 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 UBE2QL1A1L167 161 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 NUPR2A6NF83 97 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 OGG1O15527 345 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 NOL3O60936 208 aaKnown RBP4.8□□□□□ -1.64
CUX1-220ENST00000607092 CA2P00918 260 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 CD1AP06126 327 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 CDK1P06493 297 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 LIMS3P0CW19 117 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 LIMS4P0CW20 117 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 CT45A6P0DMU7 189 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 CT45A5P0DMU8 189 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 CT45A7P0DMV0 189 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 OR3A3P47888 321 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 SERPINB10P48595 397 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 RPS16P62249 146 aaKnown RBP4.8□□□□□ -1.64
CUX1-220ENST00000607092 NDPQ00604 133 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 TPBGQ13641 420 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 FXYD3Q14802 87 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 PSG5Q15238 335 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 HMGN3Q15651 99 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 SSX1Q16384 188 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 ANKRD55Q3KP44 614 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 UBE2UQ5VVX9 321 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 FAM53AQ6NSI3 398 aaPredicted RBP4.8□□□□□ -1.64
CUX1-220ENST00000607092 ZNF343Q6P1L6 599 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 SLC25A42Q86VD7 318 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 CLVS1Q8IUQ0 354 aaPredicted RBP4.8□□□□□ -1.64
CUX1-220ENST00000607092 ODF3L1Q8IXM7 274 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 TMEM217Q8N7C4 229 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 GRPEL2Q8TAA5 225 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 KCNG3Q8TAE7 436 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 MRPL30Q8TCC3 161 aaKnown RBP4.8□□□□□ -1.64
CUX1-220ENST00000607092 DYNLRB2Q8TF09 96 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 APH1BQ8WW43 257 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 GGHQ92820 318 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 FAM46BQ96A09 425 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 OR14A2Q96R54 314 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 TINAGL1Q9GZM7 467 aaPredicted RBP4.8□□□□□ -1.64
CUX1-220ENST00000607092 IFI27L2Q9H2X8 130 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 ACOT13Q9NPJ3 140 aa4.8□□□□□ -1.64
CUX1-220ENST00000607092 TECRQ9NZ01 308 aaKnown RBP4.8□□□□□ -1.64
CUX1-220ENST00000607092 KLK5Q9Y337 293 aaPredicted RBP4.8□□□□□ -1.64
CUX1-220ENST00000607092 TRBV6-6A0A0A6YYG2 114 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 A0A1W2PP11 408 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 FAM223BA6NKX1 122 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 MPPED1O15442 326 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 DIRAS3O95661 229 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 GSTT2P0CG29 244 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 GSTT2BP0CG30 244 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 RRASP10301 218 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 EGR2P11161 476 aaPredicted RBP4.79□□□□□ -1.64
CUX1-220ENST00000607092 SYNJ2BPP57105 145 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 CD81P60033 236 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 ST3GAL4Q11206 333 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 IRF3Q14653 427 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 GNMTQ14749 295 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms