RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 FOLR3P41439 243 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 C3AR1Q16581 482 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 CXorf67Q86X51 503 aaPredicted RBP15.45■□□□□ 0.06
UPF1-210ENST00000600689 TUSC5Q8IXB3 177 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 OR10P1Q8NGE3 313 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 SF3B5Q9BWJ5 86 aaKnown RBP15.45■□□□□ 0.06
UPF1-210ENST00000600689 NCKAP5O14513 1909 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 KNTC1P50748 2209 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 CDKN1AP38936 164 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 DUSP3P51452 185 aaPredicted RBP15.45■□□□□ 0.06
UPF1-210ENST00000600689 B3GALT5-AS1P59052 145 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 RAB4BP61018 213 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 GNB1P62873 340 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 Q0VFX4 171 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 COA6Q5JTJ3 125 aaKnown RBP15.45■□□□□ 0.06
UPF1-210ENST00000600689 OR5A2Q8NGI9 324 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 ZNF391Q9UJN7 358 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 GOLT1BQ9Y3E0 138 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 IGHV3-43A0A0B4J1X8 118 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 DEFB108AA8MXU0 73 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 F2Z2F3 143 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 SLC17A3O00476 420 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 IGHV3-13P01766 116 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 IGHV3-7P01780 117 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 IGHV3-43DP0DP04 118 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 COX5AP20674 150 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 CCKARP32238 428 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 OR3A1P47881 315 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 CISD2Q8N5K1 135 aaKnown RBP15.45■□□□□ 0.06
UPF1-210ENST00000600689 TPRX1Q8N7U7 411 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 CMTM2Q8TAZ6 248 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 OR2D2Q9H210 308 aa15.45■□□□□ 0.06
UPF1-210ENST00000600689 PINLYPA6NC86 204 aa15.44■□□□□ 0.06
UPF1-210ENST00000600689 TMEM250H0YL14 139 aa15.44■□□□□ 0.06
UPF1-210ENST00000600689 RPL30P62888 115 aaKnown RBP15.44■□□□□ 0.06
UPF1-210ENST00000600689 ANAPC16Q96DE5 110 aa15.44■□□□□ 0.06
UPF1-210ENST00000600689 DIRC2Q96SL1 478 aa15.44■□□□□ 0.06
UPF1-210ENST00000600689 LIN7CQ9NUP9 197 aaKnown RBP15.44■□□□□ 0.06
UPF1-210ENST00000600689 PRR14LQ5THK1 2151 aa15.44■□□□□ 0.06
UPF1-210ENST00000600689 ANKRD30BLA7E2S9 258 aa15.44■□□□□ 0.06
UPF1-210ENST00000600689 RBFOX2O43251 390 aaKnown RBP eCLIP15.44■□□□□ 0.06
UPF1-210ENST00000600689 S1PR2O95136 353 aa15.44■□□□□ 0.06
UPF1-210ENST00000600689 SLC25A6P12236 298 aa15.44■□□□□ 0.06
UPF1-210ENST00000600689 LINC01551Q86U37 167 aa15.44■□□□□ 0.06
UPF1-210ENST00000600689 HSPB9Q9BQS6 159 aa15.44■□□□□ 0.06
UPF1-210ENST00000600689 GGCTO75223 188 aaKnown RBP15.43■□□□□ 0.06
UPF1-210ENST00000600689 CELA3AP09093 270 aa15.43■□□□□ 0.06
UPF1-210ENST00000600689 CDC34P49427 236 aaPredicted RBP15.43■□□□□ 0.06
UPF1-210ENST00000600689 TRA2AQ13595 282 aaKnown RBP eCLIP15.43■□□□□ 0.06
UPF1-210ENST00000600689 C1orf194Q5T5A4 169 aa15.43■□□□□ 0.06
UPF1-210ENST00000600689 TIPARPQ7Z3E1 657 aaKnown RBP15.43■□□□□ 0.06
UPF1-210ENST00000600689 NUFIP2Q7Z417 695 aaKnown RBP15.43■□□□□ 0.06
UPF1-210ENST00000600689 RFESDQ8TAC1 157 aa15.43■□□□□ 0.06
UPF1-210ENST00000600689 C12orf49Q9H741 205 aa15.43■□□□□ 0.06
UPF1-210ENST00000600689 SH2D2AQ9NP31 389 aa15.43■□□□□ 0.06
UPF1-210ENST00000600689 DEPPQ9NTK1 212 aa15.43■□□□□ 0.06
UPF1-210ENST00000600689 ODAMA1E959 279 aa15.43■□□□□ 0.06
UPF1-210ENST00000600689 SLC35B1P78383 322 aa15.43■□□□□ 0.06
UPF1-210ENST00000600689 SPINK14Q6IE38 97 aa15.43■□□□□ 0.06
UPF1-210ENST00000600689 AGMATQ9BSE5 352 aa15.43■□□□□ 0.06
UPF1-210ENST00000600689 NPCDR1Q9BY65 106 aa15.43■□□□□ 0.06
UPF1-210ENST00000600689 GRPP07492 148 aa15.42■□□□□ 0.06
UPF1-210ENST00000600689 OR10J1P30954 320 aa15.42■□□□□ 0.06
UPF1-210ENST00000600689 Q6ZS49 121 aa15.42■□□□□ 0.06
UPF1-210ENST00000600689 OR52L2PQ8NGH6 319 aa15.42■□□□□ 0.06
UPF1-210ENST00000600689 DTD1Q8TEA8 209 aa15.42■□□□□ 0.06
UPF1-210ENST00000600689 LSM10Q969L4 123 aaKnown RBP15.42■□□□□ 0.06
UPF1-210ENST00000600689 SAMD10Q9BYL1 202 aa15.42■□□□□ 0.06
UPF1-210ENST00000600689 PRDM14Q9GZV8 571 aa15.42■□□□□ 0.06
UPF1-210ENST00000600689 RYDENQ9NUL5 291 aaKnown RBP15.42■□□□□ 0.06
UPF1-210ENST00000600689 A0A1W2PPV4 95 aa15.42■□□□□ 0.06
UPF1-210ENST00000600689 PDLIM4P50479 330 aa15.42■□□□□ 0.06
UPF1-210ENST00000600689 OR5I1Q13606 314 aa15.42■□□□□ 0.06
UPF1-210ENST00000600689 DMRTA1Q5VZB9 504 aa15.42■□□□□ 0.06
UPF1-210ENST00000600689 SPSB4Q96A44 273 aa15.42■□□□□ 0.06
UPF1-210ENST00000600689 TMEM147Q9BVK8 224 aa15.42■□□□□ 0.06
UPF1-210ENST00000600689 HIPK2Q9H2X6 1198 aa15.42■□□□□ 0.06
UPF1-210ENST00000600689 OR2H2O95918 312 aa15.42■□□□□ 0.06
UPF1-210ENST00000600689 RPLP1P05386 114 aaKnown RBP15.42■□□□□ 0.06
UPF1-210ENST00000600689 CYC1P08574 325 aa15.42■□□□□ 0.06
UPF1-210ENST00000600689 TNFSF10P50591 281 aa15.42■□□□□ 0.06
UPF1-210ENST00000600689 PPP1R32Q7Z5V6 425 aa15.42■□□□□ 0.06
UPF1-210ENST00000600689 TECTBQ96PL2 329 aa15.42■□□□□ 0.06
UPF1-210ENST00000600689 SVILO95425 2214 aa15.42■□□□□ 0.06
UPF1-210ENST00000600689 PCSK5Q92824 1860 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 MDFIC2A0A1B0GVS7 189 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 A0A1B0GWJ7 208 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 C17orf98A8MV24 154 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 RNPS1Q15287 305 aaKnown RBP15.41■□□□□ 0.06
UPF1-210ENST00000600689 TMEM14EPQ6UXP3 125 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 Q6ZWC4 215 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 BAGE3Q86Y29 109 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 BAGE2Q86Y30 109 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 TRAV34A0A0B4J273 112 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 FAM90A10PA6NDY2 464 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 FAM90A18PA6NE21 464 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 FAM90A16PA6NEW6 464 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 FAM90A20PA6NIJ5 464 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 FAM90A8PA6NJQ4 464 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 FAM90A7PA6NKC0 464 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms