RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 ABCA4P78363 2273 aa11.96□□□□□ -0.5
VRK3-217ENST00000599538 NUDT19A8MXV4 375 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 M0R1X1 148 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 TMPRSS2O15393 492 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 ATG12O94817 140 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 CD55P08174 381 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 TNFRSF9Q07011 255 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 MSMO1Q15800 293 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 SPINK9Q5DT21 86 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 CT45A1Q5HYN5 189 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 NCMAPQ5T1S8 102 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 CT45A3Q8NHU0 189 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 FAM213BQ8TBF2 198 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 ZDHHC16Q969W1 377 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 TSNAXQ99598 290 aaKnown RBP11.95□□□□□ -0.5
VRK3-217ENST00000599538 ATP5SQ99766 215 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 C19orf12Q9NSK7 152 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 COA4Q9NYJ1 87 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 KBTBD11-OT1A0A1B0GTJ5 212 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 LRRC30A6NM36 301 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 F8W036 122 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 RNASEK-C17orf49H0YIS7 233 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 FCGR3BO75015 233 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 CD5P06127 495 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 C1QTNF9P0C862 333 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 IRF2P14316 349 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 M6PRP20645 277 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 CA7P43166 264 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 STX12Q86Y82 276 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 PUSL1Q8N0Z8 303 aaKnown RBP11.95□□□□□ -0.5
VRK3-217ENST00000599538 SCRT1Q9BWW7 348 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 SAP30LQ9HAJ7 183 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 ZNRD1Q9P1U0 126 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 CLN8Q9UBY8 286 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 HSPB7Q9UBY9 170 aa11.95□□□□□ -0.5
VRK3-217ENST00000599538 TPRP12270 2363 aaKnown RBP11.94□□□□□ -0.5
VRK3-217ENST00000599538 ANKHD1Q8IWZ3 2542 aaKnown RBP11.94□□□□□ -0.5
VRK3-217ENST00000599538 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.94□□□□□ -0.5
VRK3-217ENST00000599538 MARCH11A6NNE9 402 aa11.94□□□□□ -0.5
VRK3-217ENST00000599538 TNFRSF1AP19438 455 aa11.94□□□□□ -0.5
VRK3-217ENST00000599538 NFYBP25208 207 aa11.94□□□□□ -0.5
VRK3-217ENST00000599538 VKORC1L1Q8N0U8 176 aa11.94□□□□□ -0.5
VRK3-217ENST00000599538 CCL17Q92583 94 aa11.94□□□□□ -0.5
VRK3-217ENST00000599538 RNASE6Q93091 150 aaKnown RBP11.94□□□□□ -0.5
VRK3-217ENST00000599538 GFOD1Q9NXC2 390 aa11.94□□□□□ -0.5
VRK3-217ENST00000599538 DCHS2Q6V1P9 2916 aa11.94□□□□□ -0.5
VRK3-217ENST00000599538 TRGV10A0A0A0MS01 117 aa11.93□□□□□ -0.5
VRK3-217ENST00000599538 FAM157AC9JC47 383 aa11.93□□□□□ -0.5
VRK3-217ENST00000599538 CCL21O00585 134 aa11.93□□□□□ -0.5
VRK3-217ENST00000599538 TSPAN15O95858 294 aa11.93□□□□□ -0.5
VRK3-217ENST00000599538 OR9G9P0C7N8 305 aa11.93□□□□□ -0.5
VRK3-217ENST00000599538 SNCAP37840 140 aa11.93□□□□□ -0.5
VRK3-217ENST00000599538 KLRB1Q12918 225 aa11.93□□□□□ -0.5
VRK3-217ENST00000599538 C10orf91Q5T1B1 145 aa11.93□□□□□ -0.5
VRK3-217ENST00000599538 SSX9Q7RTT3 188 aa11.93□□□□□ -0.5
VRK3-217ENST00000599538 RSG1Q9BU20 258 aa11.93□□□□□ -0.5
VRK3-217ENST00000599538 FAM74A7A6NL05 159 aa11.93□□□□□ -0.5
VRK3-217ENST00000599538 SIAH2O43255 324 aa11.93□□□□□ -0.5
VRK3-217ENST00000599538 ZG16O60844 167 aa11.93□□□□□ -0.5
VRK3-217ENST00000599538 PLA2G5P39877 138 aa11.93□□□□□ -0.5
VRK3-217ENST00000599538 RPS16P62249 146 aaKnown RBP11.93□□□□□ -0.5
VRK3-217ENST00000599538 CCL20P78556 96 aa11.93□□□□□ -0.5
VRK3-217ENST00000599538 FAM74A3Q4VXF1 159 aa11.93□□□□□ -0.5
VRK3-217ENST00000599538 H2BFWTQ7Z2G1 175 aa11.93□□□□□ -0.5
VRK3-217ENST00000599538 THNSL2Q86YJ6 484 aa11.93□□□□□ -0.5
VRK3-217ENST00000599538 ZNF525Q8N782 197 aa11.93□□□□□ -0.5
VRK3-217ENST00000599538 NCOR1P1Q9H4R4 102 aa11.93□□□□□ -0.5
VRK3-217ENST00000599538 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.93□□□□□ -0.5
VRK3-217ENST00000599538 FBXO7Q9Y3I1 522 aa11.93□□□□□ -0.5
VRK3-217ENST00000599538 TMEM178BH3BS89 294 aa11.92□□□□□ -0.5
VRK3-217ENST00000599538 RAB29O14966 203 aa11.92□□□□□ -0.5
VRK3-217ENST00000599538 GPR37O15354 613 aa11.92□□□□□ -0.5
VRK3-217ENST00000599538 NDUFB7P17568 137 aa11.92□□□□□ -0.5
VRK3-217ENST00000599538 GNG10P50151 68 aa11.92□□□□□ -0.5
VRK3-217ENST00000599538 OR2B8PP59922 312 aa11.92□□□□□ -0.5
VRK3-217ENST00000599538 ZNF273Q14593 569 aa11.92□□□□□ -0.5
VRK3-217ENST00000599538 PRAMEF5Q5TYX0 476 aa11.92□□□□□ -0.5
VRK3-217ENST00000599538 LYPD2Q6UXB3 125 aa11.92□□□□□ -0.5
VRK3-217ENST00000599538 R3HDM4Q96D70 268 aa11.92□□□□□ -0.5
VRK3-217ENST00000599538 OR4C12Q96R67 309 aa11.92□□□□□ -0.5
VRK3-217ENST00000599538 DIRC2Q96SL1 478 aa11.92□□□□□ -0.5
VRK3-217ENST00000599538 NKX6-2Q9C056 277 aaPredicted RBP11.92□□□□□ -0.5
VRK3-217ENST00000599538 ITPR1Q14643 2758 aa11.92□□□□□ -0.5
VRK3-217ENST00000599538 SAA2-SAA4A0A096LPE2 208 aa11.92□□□□□ -0.5
VRK3-217ENST00000599538 FAM90A26D6RGX4 464 aa11.92□□□□□ -0.5
VRK3-217ENST00000599538 DNASE2O00115 360 aaPredicted RBP11.92□□□□□ -0.5
VRK3-217ENST00000599538 SFTA3P0C7M3 94 aa11.92□□□□□ -0.5
VRK3-217ENST00000599538 SAA2P0DJI9 122 aaPredicted RBP11.92□□□□□ -0.5
VRK3-217ENST00000599538 RAB5CP51148 216 aa11.92□□□□□ -0.5
VRK3-217ENST00000599538 OR8G2PQ6IF36 304 aa11.92□□□□□ -0.5
VRK3-217ENST00000599538 TCTEX1D1Q8N7M0 179 aa11.92□□□□□ -0.5
VRK3-217ENST00000599538 ZNF251Q9BRH9 671 aa11.92□□□□□ -0.5
VRK3-217ENST00000599538 QTRT1Q9BXR0 403 aaKnown RBP11.92□□□□□ -0.5
VRK3-217ENST00000599538 STRAPQ9Y3F4 350 aaKnown RBP11.92□□□□□ -0.5
VRK3-217ENST00000599538 TET2Q6N021 2002 aaPredicted RBP11.92□□□□□ -0.5
VRK3-217ENST00000599538 TRAV3A0A0B4J244 114 aa11.91□□□□□ -0.5
VRK3-217ENST00000599538 RBMXL2O75526 392 aaKnown RBP11.91□□□□□ -0.5
VRK3-217ENST00000599538 DVL1P1P54792 670 aaPredicted RBP11.91□□□□□ -0.5
VRK3-217ENST00000599538 TAS2R30P59541 319 aa11.91□□□□□ -0.5
VRK3-217ENST00000599538 ADORA2A-AS1P86434 159 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 162.6 ms