RNA–Protein interactions for RNA: ENST00000596436.5

USHBP1-206, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 487 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-206ENST00000596436 ANAPC10Q9UM13 185 aa12.55□□□□□ -0.4
USHBP1-206ENST00000596436 H0YJW9 148 aa12.54□□□□□ -0.4
USHBP1-206ENST00000596436 M0R1X1 148 aa12.54□□□□□ -0.4
USHBP1-206ENST00000596436 CNTFRP26992 372 aa12.54□□□□□ -0.4
USHBP1-206ENST00000596436 C9orf152Q5JTZ5 239 aa12.54□□□□□ -0.4
USHBP1-206ENST00000596436 ZNF383Q8NA42 475 aa12.54□□□□□ -0.4
USHBP1-206ENST00000596436 OR5AN1Q8NGI8 311 aa12.54□□□□□ -0.4
USHBP1-206ENST00000596436 GPR61Q9BZJ8 451 aa12.54□□□□□ -0.4
USHBP1-206ENST00000596436 RBM38Q9H0Z9 239 aaKnown RBP12.54□□□□□ -0.4
USHBP1-206ENST00000596436 CCDC59Q9P031 241 aaKnown RBP12.54□□□□□ -0.4
USHBP1-206ENST00000596436 IGKV1D-13A0A0B4J2D9 117 aa12.53□□□□□ -0.4
USHBP1-206ENST00000596436 NCBP2LA6PVI3 153 aaKnown RBP12.53□□□□□ -0.4
USHBP1-206ENST00000596436 FAM25AB3EWG3 89 aa12.53□□□□□ -0.4
USHBP1-206ENST00000596436 FAM25CB3EWG5 89 aa12.53□□□□□ -0.4
USHBP1-206ENST00000596436 FAM25GB3EWG6 89 aa12.53□□□□□ -0.4
USHBP1-206ENST00000596436 J3QRK9 145 aa12.53□□□□□ -0.4
USHBP1-206ENST00000596436 NOL3O60936 208 aaKnown RBP12.53□□□□□ -0.4
USHBP1-206ENST00000596436 TUSC2O75896 110 aa12.53□□□□□ -0.4
USHBP1-206ENST00000596436 CTXN2P0C2S0 81 aa12.53□□□□□ -0.4
USHBP1-206ENST00000596436 IGKV1-13P0DP09 117 aa12.53□□□□□ -0.4
USHBP1-206ENST00000596436 HOXD3P31249 432 aaPredicted RBP12.53□□□□□ -0.4
USHBP1-206ENST00000596436 CBX5P45973 191 aa12.53□□□□□ -0.4
USHBP1-206ENST00000596436 ARPC4P59998 168 aa12.53□□□□□ -0.4
USHBP1-206ENST00000596436 ACTBP60709 375 aa12.53□□□□□ -0.4
USHBP1-206ENST00000596436 DEFB121Q5J5C9 76 aa12.53□□□□□ -0.4
USHBP1-206ENST00000596436 SNX29P2Q8IUI4 249 aa12.53□□□□□ -0.4
USHBP1-206ENST00000596436 MRPL41Q8IXM3 137 aaKnown RBP12.53□□□□□ -0.4
USHBP1-206ENST00000596436 FAM71E2Q8N5Q1 922 aa12.53□□□□□ -0.4
USHBP1-206ENST00000596436 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.53□□□□□ -0.4
USHBP1-206ENST00000596436 GAB2Q9UQC2 676 aa12.53□□□□□ -0.4
USHBP1-206ENST00000596436 MRPS7Q9Y2R9 242 aaKnown RBP12.53□□□□□ -0.4
USHBP1-206ENST00000596436 STAB2Q8WWQ8 2551 aa12.53□□□□□ -0.4
USHBP1-206ENST00000596436 OR5H14A6NHG9 310 aa12.52□□□□□ -0.41
USHBP1-206ENST00000596436 LINC01548A6NM66 108 aa12.52□□□□□ -0.41
USHBP1-206ENST00000596436 CTDSP2O14595 271 aa12.52□□□□□ -0.41
USHBP1-206ENST00000596436 PRSS3P35030 304 aa12.52□□□□□ -0.41
USHBP1-206ENST00000596436 SOX6P35712 828 aa12.52□□□□□ -0.41
USHBP1-206ENST00000596436 MMDQ15546 238 aa12.52□□□□□ -0.41
USHBP1-206ENST00000596436 LAX1Q8IWV1 398 aa12.52□□□□□ -0.41
USHBP1-206ENST00000596436 GPX8Q8TED1 209 aa12.52□□□□□ -0.41
USHBP1-206ENST00000596436 SLIRPQ9GZT3 109 aaKnown RBP12.52□□□□□ -0.41
USHBP1-206ENST00000596436 IFT46Q9NQC8 304 aa12.52□□□□□ -0.41
USHBP1-206ENST00000596436 LIN7CQ9NUP9 197 aaKnown RBP12.52□□□□□ -0.41
USHBP1-206ENST00000596436 EXTL2Q9UBQ6 330 aa12.52□□□□□ -0.41
USHBP1-206ENST00000596436 WASHC3Q9Y3C0 194 aa12.52□□□□□ -0.41
USHBP1-206ENST00000596436 OR2W1Q9Y3N9 320 aa12.52□□□□□ -0.41
USHBP1-206ENST00000596436 RBM7Q9Y580 266 aaKnown RBP12.52□□□□□ -0.41
USHBP1-206ENST00000596436 SMIM31A0A1B0GVY4 71 aa12.51□□□□□ -0.41
USHBP1-206ENST00000596436 IGLV2-14P01704 120 aa12.51□□□□□ -0.41
USHBP1-206ENST00000596436 NAT1P18440 290 aa12.51□□□□□ -0.41
USHBP1-206ENST00000596436 THBS3P49746 956 aa12.51□□□□□ -0.41
USHBP1-206ENST00000596436 CD69Q07108 199 aa12.51□□□□□ -0.41
USHBP1-206ENST00000596436 OR5AP2Q8NGF4 316 aa12.51□□□□□ -0.41
USHBP1-206ENST00000596436 OR8H1Q8NGG4 311 aa12.51□□□□□ -0.41
USHBP1-206ENST00000596436 HSPB9Q9BQS6 159 aa12.51□□□□□ -0.41
USHBP1-206ENST00000596436 ADAM30Q9UKF2 790 aa12.51□□□□□ -0.41
USHBP1-206ENST00000596436 NBR2O15453 112 aa12.5□□□□□ -0.41
USHBP1-206ENST00000596436 IGHG2P01859 326 aa12.5□□□□□ -0.41
USHBP1-206ENST00000596436 IGKV1-16P04430 117 aa12.5□□□□□ -0.41
USHBP1-206ENST00000596436 OR5H8P0DN80 308 aa12.5□□□□□ -0.41
USHBP1-206ENST00000596436 AADACP22760 399 aa12.5□□□□□ -0.41
USHBP1-206ENST00000596436 SLC6A1P30531 599 aa12.5□□□□□ -0.41
USHBP1-206ENST00000596436 FCGR2CP31995 323 aa12.5□□□□□ -0.41
USHBP1-206ENST00000596436 MC5RP33032 325 aa12.5□□□□□ -0.41
USHBP1-206ENST00000596436 LUMP51884 338 aaPredicted RBP12.5□□□□□ -0.41
USHBP1-206ENST00000596436 CDK10Q15131 360 aa12.5□□□□□ -0.41
USHBP1-206ENST00000596436 RNASE12Q5GAN4 147 aaKnown RBP12.5□□□□□ -0.41
USHBP1-206ENST00000596436 NPBQ8NG41 125 aa12.5□□□□□ -0.41
USHBP1-206ENST00000596436 RASL11BQ9BPW5 248 aa12.5□□□□□ -0.41
USHBP1-206ENST00000596436 CCDC160A6NGH7 325 aa12.49□□□□□ -0.41
USHBP1-206ENST00000596436 LINC00473A8K010 186 aa12.49□□□□□ -0.41
USHBP1-206ENST00000596436 H7C2Y5 167 aa12.49□□□□□ -0.41
USHBP1-206ENST00000596436 RGS5O15539 181 aa12.49□□□□□ -0.41
USHBP1-206ENST00000596436 NDUFA3O95167 84 aa12.49□□□□□ -0.41
USHBP1-206ENST00000596436 RPL23AP62750 156 aaKnown RBP12.49□□□□□ -0.41
USHBP1-206ENST00000596436 DCTN2Q13561 401 aaKnown RBP12.49□□□□□ -0.41
USHBP1-206ENST00000596436 SLC35E3Q7Z769 313 aa12.49□□□□□ -0.41
USHBP1-206ENST00000596436 PDPNQ86YL7 162 aa12.49□□□□□ -0.41
USHBP1-206ENST00000596436 LYSMD2Q8IV50 215 aa12.49□□□□□ -0.41
USHBP1-206ENST00000596436 ZNF645Q8N7E2 425 aa12.49□□□□□ -0.41
USHBP1-206ENST00000596436 DDB2Q92466 427 aa12.49□□□□□ -0.41
USHBP1-206ENST00000596436 DPF1Q92782 380 aa12.49□□□□□ -0.41
USHBP1-206ENST00000596436 NOL4LQ96MY1 436 aaPredicted RBP12.49□□□□□ -0.41
USHBP1-206ENST00000596436 ABHD1Q96SE0 405 aa12.49□□□□□ -0.41
USHBP1-206ENST00000596436 P2RX4Q99571 388 aa12.49□□□□□ -0.41
USHBP1-206ENST00000596436 MCRIP2Q9BUT9 160 aaKnown RBP12.49□□□□□ -0.41
USHBP1-206ENST00000596436 SCPEP1Q9HB40 452 aa12.49□□□□□ -0.41
USHBP1-206ENST00000596436 SLC35D1Q9NTN3 355 aa12.49□□□□□ -0.41
USHBP1-206ENST00000596436 ZNF107Q9UII5 783 aaPredicted RBP12.49□□□□□ -0.41
USHBP1-206ENST00000596436 LINC00527Q9UJ94 153 aa12.49□□□□□ -0.41
USHBP1-206ENST00000596436 DYNC2H1Q8NCM8 4307 aaKnown RBP12.49□□□□□ -0.41
USHBP1-206ENST00000596436 PSMB11A5LHX3 300 aa12.48□□□□□ -0.41
USHBP1-206ENST00000596436 PPYP01298 95 aa12.48□□□□□ -0.41
USHBP1-206ENST00000596436 APOA2P02652 100 aa12.48□□□□□ -0.41
USHBP1-206ENST00000596436 PMP2P02689 132 aa12.48□□□□□ -0.41
USHBP1-206ENST00000596436 DUTP33316 252 aaKnown RBP12.48□□□□□ -0.41
USHBP1-206ENST00000596436 RFX2P48378 723 aa12.48□□□□□ -0.41
USHBP1-206ENST00000596436 EIF4EBP1Q13541 118 aaPredicted RBP12.48□□□□□ -0.41
USHBP1-206ENST00000596436 C5orf64Q2M2E5 130 aa12.48□□□□□ -0.41
USHBP1-206ENST00000596436 KHDC1LQ5JSQ8 128 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms