RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 FAM25CB3EWG5 89 aa9.8□□□□□ -0.84
UPF1-203ENST00000594504 FAM25GB3EWG6 89 aa9.8□□□□□ -0.84
UPF1-203ENST00000594504 ZNF736B4DX44 427 aaPredicted RBP9.8□□□□□ -0.84
UPF1-203ENST00000594504 FGF16O43320 207 aa9.8□□□□□ -0.84
UPF1-203ENST00000594504 HLA-DQB1P01920 261 aa9.8□□□□□ -0.84
UPF1-203ENST00000594504 RPLP1P05386 114 aaKnown RBP9.8□□□□□ -0.84
UPF1-203ENST00000594504 OR8U9P0C7N5 309 aa9.8□□□□□ -0.84
UPF1-203ENST00000594504 PRSS3P35030 304 aa9.8□□□□□ -0.84
UPF1-203ENST00000594504 GPR12P47775 334 aa9.8□□□□□ -0.84
UPF1-203ENST00000594504 RAB25P57735 213 aa9.8□□□□□ -0.84
UPF1-203ENST00000594504 ARPC4P59998 168 aa9.8□□□□□ -0.84
UPF1-203ENST00000594504 OR8H1Q8NGG4 311 aa9.8□□□□□ -0.84
UPF1-203ENST00000594504 OR8U1Q8NH10 309 aa9.8□□□□□ -0.84
UPF1-203ENST00000594504 DPF1Q92782 380 aa9.8□□□□□ -0.84
UPF1-203ENST00000594504 RAX2Q96IS3 184 aa9.8□□□□□ -0.84
UPF1-203ENST00000594504 B9D2Q9BPU9 175 aa9.8□□□□□ -0.84
UPF1-203ENST00000594504 OR2D2Q9H210 308 aa9.8□□□□□ -0.84
UPF1-203ENST00000594504 IFT46Q9NQC8 304 aa9.8□□□□□ -0.84
UPF1-203ENST00000594504 RNF150Q9ULK6 438 aa9.8□□□□□ -0.84
UPF1-203ENST00000594504 GAB2Q9UQC2 676 aa9.8□□□□□ -0.84
UPF1-203ENST00000594504 MRPS7Q9Y2R9 242 aaKnown RBP9.8□□□□□ -0.84
UPF1-203ENST00000594504 RBM7Q9Y580 266 aaKnown RBP9.8□□□□□ -0.84
UPF1-203ENST00000594504 MEIS3P1A6NDR6 274 aa9.79□□□□□ -0.84
UPF1-203ENST00000594504 CCDC160A6NGH7 325 aa9.79□□□□□ -0.84
UPF1-203ENST00000594504 OR5H14A6NHG9 310 aa9.79□□□□□ -0.84
UPF1-203ENST00000594504 TPPPO94811 219 aa9.79□□□□□ -0.84
UPF1-203ENST00000594504 CT45A6P0DMU7 189 aa9.79□□□□□ -0.84
UPF1-203ENST00000594504 CT45A5P0DMU8 189 aa9.79□□□□□ -0.84
UPF1-203ENST00000594504 CT45A7P0DMV0 189 aa9.79□□□□□ -0.84
UPF1-203ENST00000594504 SLC35B1P78383 322 aa9.79□□□□□ -0.84
UPF1-203ENST00000594504 DEFB136Q30KP8 78 aa9.79□□□□□ -0.84
UPF1-203ENST00000594504 ZNF695Q8IW36 515 aa9.79□□□□□ -0.84
UPF1-203ENST00000594504 FOXRED2Q8IWF2 684 aa9.79□□□□□ -0.84
UPF1-203ENST00000594504 Q8N9W7 124 aa9.79□□□□□ -0.84
UPF1-203ENST00000594504 SNAPC3Q92966 411 aa9.79□□□□□ -0.84
UPF1-203ENST00000594504 RBM38Q9H0Z9 239 aaKnown RBP9.79□□□□□ -0.84
UPF1-203ENST00000594504 SCPEP1Q9HB40 452 aa9.79□□□□□ -0.84
UPF1-203ENST00000594504 ADAM30Q9UKF2 790 aa9.79□□□□□ -0.84
UPF1-203ENST00000594504 ANAPC10Q9UM13 185 aa9.79□□□□□ -0.84
UPF1-203ENST00000594504 OR2W1Q9Y3N9 320 aa9.79□□□□□ -0.84
UPF1-203ENST00000594504 H0YJW9 148 aa9.78□□□□□ -0.84
UPF1-203ENST00000594504 ZNF701M0R085 212 aaPredicted RBP9.78□□□□□ -0.84
UPF1-203ENST00000594504 CCL24O00175 119 aa9.78□□□□□ -0.84
UPF1-203ENST00000594504 RGS5O15539 181 aa9.78□□□□□ -0.84
UPF1-203ENST00000594504 PROP1O75360 226 aa9.78□□□□□ -0.84
UPF1-203ENST00000594504 NFYAP23511 347 aaPredicted RBP9.78□□□□□ -0.84
UPF1-203ENST00000594504 MC5RP33032 325 aa9.78□□□□□ -0.84
UPF1-203ENST00000594504 LUMP51884 338 aaPredicted RBP9.78□□□□□ -0.84
UPF1-203ENST00000594504 FAM131AQ6UXB0 335 aa9.78□□□□□ -0.84
UPF1-203ENST00000594504 SNX29P2Q8IUI4 249 aa9.78□□□□□ -0.84
UPF1-203ENST00000594504 OR5AP2Q8NGF4 316 aa9.78□□□□□ -0.84
UPF1-203ENST00000594504 OR5AN1Q8NGI8 311 aa9.78□□□□□ -0.84
UPF1-203ENST00000594504 GPX8Q8TED1 209 aa9.78□□□□□ -0.84
UPF1-203ENST00000594504 C15orf40Q8WUR7 153 aa9.78□□□□□ -0.84
UPF1-203ENST00000594504 MCRIP2Q9BUT9 160 aaKnown RBP9.78□□□□□ -0.84
UPF1-203ENST00000594504 PLSCR3Q9NRY6 295 aa9.78□□□□□ -0.84
UPF1-203ENST00000594504 SDHAF2Q9NX18 166 aa9.78□□□□□ -0.84
UPF1-203ENST00000594504 EXTL2Q9UBQ6 330 aa9.78□□□□□ -0.84
UPF1-203ENST00000594504 RSL24D1Q9UHA3 163 aaKnown RBP9.78□□□□□ -0.84
UPF1-203ENST00000594504 M0R1X1 148 aa9.77□□□□□ -0.85
UPF1-203ENST00000594504 SULT1C2O00338 296 aa9.77□□□□□ -0.85
UPF1-203ENST00000594504 CTDSP2O14595 271 aa9.77□□□□□ -0.85
UPF1-203ENST00000594504 RBBP9O75884 186 aa9.77□□□□□ -0.85
UPF1-203ENST00000594504 TUSC2O75896 110 aa9.77□□□□□ -0.85
UPF1-203ENST00000594504 SLC22A5O76082 557 aa9.77□□□□□ -0.85
UPF1-203ENST00000594504 FCER2P06734 321 aa9.77□□□□□ -0.85
UPF1-203ENST00000594504 OR5H8P0DN80 308 aa9.77□□□□□ -0.85
UPF1-203ENST00000594504 NAT1P18440 290 aa9.77□□□□□ -0.85
UPF1-203ENST00000594504 F2RL1P55085 397 aa9.77□□□□□ -0.85
UPF1-203ENST00000594504 ACTBP60709 375 aa9.77□□□□□ -0.85
UPF1-203ENST00000594504 DGCR2P98153 550 aa9.77□□□□□ -0.85
UPF1-203ENST00000594504 CDK10Q15131 360 aa9.77□□□□□ -0.85
UPF1-203ENST00000594504 MMDQ15546 238 aa9.77□□□□□ -0.85
UPF1-203ENST00000594504 TEX38Q6PEX7 206 aa9.77□□□□□ -0.85
UPF1-203ENST00000594504 GLDNQ6ZMI3 551 aaPredicted RBP9.77□□□□□ -0.85
UPF1-203ENST00000594504 LAX1Q8IWV1 398 aa9.77□□□□□ -0.85
UPF1-203ENST00000594504 COMMD1Q8N668 190 aa9.77□□□□□ -0.85
UPF1-203ENST00000594504 DRAXINQ8NBI3 349 aaPredicted RBP9.77□□□□□ -0.85
UPF1-203ENST00000594504 WWC2-AS2Q96NR7 200 aa9.77□□□□□ -0.85
UPF1-203ENST00000594504 PRR25Q96S07 402 aa9.77□□□□□ -0.85
UPF1-203ENST00000594504 HSPB9Q9BQS6 159 aa9.77□□□□□ -0.85
UPF1-203ENST00000594504 GPR61Q9BZJ8 451 aa9.77□□□□□ -0.85
UPF1-203ENST00000594504 SLIRPQ9GZT3 109 aaKnown RBP9.77□□□□□ -0.85
UPF1-203ENST00000594504 MIXL1Q9H2W2 232 aa9.77□□□□□ -0.85
UPF1-203ENST00000594504 LIN7CQ9NUP9 197 aaKnown RBP9.77□□□□□ -0.85
UPF1-203ENST00000594504 WASHC3Q9Y3C0 194 aa9.77□□□□□ -0.85
UPF1-203ENST00000594504 H7C2Y5 167 aa9.76□□□□□ -0.85
UPF1-203ENST00000594504 AP4M1O00189 453 aa9.76□□□□□ -0.85
UPF1-203ENST00000594504 APOA2P02652 100 aa9.76□□□□□ -0.85
UPF1-203ENST00000594504 TAS2R46P59540 309 aa9.76□□□□□ -0.85
UPF1-203ENST00000594504 TAGLNQ01995 201 aaKnown RBP9.76□□□□□ -0.85
UPF1-203ENST00000594504 FAM71E2Q8N5Q1 922 aa9.76□□□□□ -0.85
UPF1-203ENST00000594504 ZNF645Q8N7E2 425 aa9.76□□□□□ -0.85
UPF1-203ENST00000594504 ZNF383Q8NA42 475 aa9.76□□□□□ -0.85
UPF1-203ENST00000594504 C5orf30Q96GV9 206 aa9.76□□□□□ -0.85
UPF1-203ENST00000594504 RNF5Q99942 180 aa9.76□□□□□ -0.85
UPF1-203ENST00000594504 RASL11BQ9BPW5 248 aa9.76□□□□□ -0.85
UPF1-203ENST00000594504 C6orf62Q9GZU0 229 aaPredicted RBP9.76□□□□□ -0.85
UPF1-203ENST00000594504 IGKV1D-13A0A0B4J2D9 117 aa9.75□□□□□ -0.85
UPF1-203ENST00000594504 NBR2O15453 112 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms