RNA–Protein interactions for RNA: ENST00000594387.1

IRF3-208, Transcript of interferon regulatory factor 3, human

TSL 3

Gene IRF3, Length 800 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IRF3-208	ENST00000594387	ECSCR	Q19T08	205 aa		13.61	□□□□□ -0.23
IRF3-208	ENST00000594387	CNIH2	Q6PI25	160 aa		13.61	□□□□□ -0.23
IRF3-208	ENST00000594387	H1FOO	Q8IZA3	346 aa	Predicted RBP	13.61	□□□□□ -0.23
IRF3-208	ENST00000594387	TCTEX1D1	Q8N7M0	179 aa		13.61	□□□□□ -0.23
IRF3-208	ENST00000594387	ZNF383	Q8NA42	475 aa		13.61	□□□□□ -0.23
IRF3-208	ENST00000594387	NUDCD2	Q8WVJ2	157 aa		13.61	□□□□□ -0.23
IRF3-208	ENST00000594387	S100A16	Q96FQ6	103 aa	Known RBP	13.61	□□□□□ -0.23
IRF3-208	ENST00000594387	CLCC1	Q96S66	551 aa		13.61	□□□□□ -0.23
IRF3-208	ENST00000594387	SDHAF2	Q9NX18	166 aa		13.61	□□□□□ -0.23
IRF3-208	ENST00000594387	ELF5	Q9UKW6	265 aa	Predicted RBP	13.61	□□□□□ -0.23
IRF3-208	ENST00000594387	SPATA2	Q9UM82	520 aa		13.61	□□□□□ -0.23
IRF3-208	ENST00000594387	VWF	P04275	2813 aa		13.6	□□□□□ -0.23
IRF3-208	ENST00000594387		G3V318	75 aa		13.6	□□□□□ -0.23
IRF3-208	ENST00000594387	CCL24	O00175	119 aa		13.6	□□□□□ -0.23
IRF3-208	ENST00000594387	ARPC4	P59998	168 aa		13.6	□□□□□ -0.23
IRF3-208	ENST00000594387	LSM3	P62310	102 aa	Known RBP	13.6	□□□□□ -0.23
IRF3-208	ENST00000594387	PSG5	Q15238	335 aa		13.6	□□□□□ -0.23
IRF3-208	ENST00000594387	LCNL1	Q6ZST4	164 aa		13.6	□□□□□ -0.23
IRF3-208	ENST00000594387	MRPL41	Q8IXM3	137 aa	Known RBP	13.6	□□□□□ -0.23
IRF3-208	ENST00000594387	LINC00482	Q8N8I6	264 aa		13.6	□□□□□ -0.23
IRF3-208	ENST00000594387	RNF152	Q8N8N0	203 aa		13.6	□□□□□ -0.23
IRF3-208	ENST00000594387	OR5H6	Q8NGV6	325 aa		13.6	□□□□□ -0.23
IRF3-208	ENST00000594387	ZMAT5	Q9UDW3	170 aa	Known RBP	13.6	□□□□□ -0.23
IRF3-208	ENST00000594387	SHOX	O15266	292 aa		13.59	□□□□□ -0.23
IRF3-208	ENST00000594387	PROP1	O75360	226 aa		13.59	□□□□□ -0.23
IRF3-208	ENST00000594387	CNIH1	O95406	144 aa		13.59	□□□□□ -0.23
IRF3-208	ENST00000594387	PSMB8	P28062	276 aa		13.59	□□□□□ -0.23
IRF3-208	ENST00000594387	CX3CL1	P78423	397 aa		13.59	□□□□□ -0.23
IRF3-208	ENST00000594387	CFHR3	Q02985	330 aa		13.59	□□□□□ -0.23
IRF3-208	ENST00000594387	ZNF562	Q6V9R5	426 aa		13.59	□□□□□ -0.23
IRF3-208	ENST00000594387	C18orf65	Q6ZTR6	163 aa		13.59	□□□□□ -0.23
IRF3-208	ENST00000594387	PPP1R27	Q86WC6	154 aa		13.59	□□□□□ -0.23
IRF3-208	ENST00000594387	YIPF6	Q96EC8	236 aa		13.59	□□□□□ -0.23
IRF3-208	ENST00000594387	ANXA10	Q9UJ72	324 aa		13.59	□□□□□ -0.23
IRF3-208	ENST00000594387	OR2W1	Q9Y3N9	320 aa		13.59	□□□□□ -0.23
IRF3-208	ENST00000594387	A3GALT2	U3KPV4	340 aa		13.59	□□□□□ -0.23
IRF3-208	ENST00000594387	NOTCH3	Q9UM47	2321 aa		13.58	□□□□□ -0.23
IRF3-208	ENST00000594387	IGKV1D-8	A0A087WSZ0	117 aa		13.58	□□□□□ -0.24
IRF3-208	ENST00000594387		A0A1W2PN81	502 aa		13.58	□□□□□ -0.24
IRF3-208	ENST00000594387		J3QRK9	145 aa		13.58	□□□□□ -0.24
IRF3-208	ENST00000594387	SLC25A17	O43808	307 aa		13.58	□□□□□ -0.24
IRF3-208	ENST00000594387	IGKV1-16	P04430	117 aa		13.58	□□□□□ -0.24
IRF3-208	ENST00000594387	PPIF	P30405	207 aa	Known RBP	13.58	□□□□□ -0.24
IRF3-208	ENST00000594387	CHRNA7	P36544	502 aa		13.58	□□□□□ -0.24
IRF3-208	ENST00000594387	CBX5	P45973	191 aa		13.58	□□□□□ -0.24
IRF3-208	ENST00000594387	FOXB2	Q5VYV0	432 aa		13.58	□□□□□ -0.24
IRF3-208	ENST00000594387	PYHIN1	Q6K0P9	492 aa		13.58	□□□□□ -0.24
IRF3-208	ENST00000594387	UNQ5815/PRO19632	Q6UWF5	114 aa		13.58	□□□□□ -0.24
IRF3-208	ENST00000594387	BVES	Q8NE79	360 aa		13.58	□□□□□ -0.24
IRF3-208	ENST00000594387	C4orf3	Q8WVX3	66 aa		13.58	□□□□□ -0.24
IRF3-208	ENST00000594387	UBE2E2	Q96LR5	201 aa		13.58	□□□□□ -0.24
IRF3-208	ENST00000594387	HARBI1	Q96MB7	349 aa		13.58	□□□□□ -0.24
IRF3-208	ENST00000594387	DCUN1D5	Q9BTE7	237 aa		13.58	□□□□□ -0.24
IRF3-208	ENST00000594387	FOXA2	Q9Y261	457 aa	Predicted RBP	13.58	□□□□□ -0.24
IRF3-208	ENST00000594387	VSIG4	Q9Y279	399 aa		13.58	□□□□□ -0.24
IRF3-208	ENST00000594387	PRELID3B	Q9Y3B1	194 aa		13.58	□□□□□ -0.24
IRF3-208	ENST00000594387	FCN1	O00602	326 aa		13.57	□□□□□ -0.24
IRF3-208	ENST00000594387	CA2	P00918	260 aa		13.57	□□□□□ -0.24
IRF3-208	ENST00000594387	NFYA	P23511	347 aa	Predicted RBP	13.57	□□□□□ -0.24
IRF3-208	ENST00000594387	RPS19	P39019	145 aa	Known RBP	13.57	□□□□□ -0.24
IRF3-208	ENST00000594387	RAB9A	P51151	201 aa		13.57	□□□□□ -0.24
IRF3-208	ENST00000594387	LINC00205	P59089	165 aa		13.57	□□□□□ -0.24
IRF3-208	ENST00000594387	VMA21	Q3ZAQ7	101 aa		13.57	□□□□□ -0.24
IRF3-208	ENST00000594387	AKIRIN2	Q53H80	203 aa		13.57	□□□□□ -0.24
IRF3-208	ENST00000594387	ACTBL2	Q562R1	376 aa		13.57	□□□□□ -0.24
IRF3-208	ENST00000594387	UBE2NL	Q5JXB2	153 aa		13.57	□□□□□ -0.24
IRF3-208	ENST00000594387	ETV3L	Q6ZN32	361 aa		13.57	□□□□□ -0.24
IRF3-208	ENST00000594387	ZNF645	Q8N7E2	425 aa		13.57	□□□□□ -0.24
IRF3-208	ENST00000594387	BEST4	Q8NFU0	473 aa		13.57	□□□□□ -0.24
IRF3-208	ENST00000594387	OR5M8	Q8NGP6	311 aa		13.57	□□□□□ -0.24
IRF3-208	ENST00000594387	MRAP	Q8TCY5	172 aa		13.57	□□□□□ -0.24
IRF3-208	ENST00000594387	RAX2	Q96IS3	184 aa		13.57	□□□□□ -0.24
IRF3-208	ENST00000594387	P2RX4	Q99571	388 aa		13.57	□□□□□ -0.24
IRF3-208	ENST00000594387	MRPS7	Q9Y2R9	242 aa	Known RBP	13.57	□□□□□ -0.24
IRF3-208	ENST00000594387	NOTCH1	P46531	2555 aa		13.57	□□□□□ -0.24
IRF3-208	ENST00000594387	TUSC2	O75896	110 aa		13.56	□□□□□ -0.24
IRF3-208	ENST00000594387	IGLV1-40	P01703	118 aa		13.56	□□□□□ -0.24
IRF3-208	ENST00000594387	PRB2	P02812	416 aa	Predicted RBP	13.56	□□□□□ -0.24
IRF3-208	ENST00000594387	GNB1	P62873	340 aa		13.56	□□□□□ -0.24
IRF3-208	ENST00000594387	FXYD3	Q14802	87 aa		13.56	□□□□□ -0.24
IRF3-208	ENST00000594387	MINDY2	Q8NBR6	621 aa		13.56	□□□□□ -0.24
IRF3-208	ENST00000594387	ARPC1A	Q92747	370 aa		13.56	□□□□□ -0.24
IRF3-208	ENST00000594387	SLC25A38	Q96DW6	304 aa		13.56	□□□□□ -0.24
IRF3-208	ENST00000594387	DUX3	Q96PT4	197 aa		13.56	□□□□□ -0.24
IRF3-208	ENST00000594387	IFT46	Q9NQC8	304 aa		13.56	□□□□□ -0.24
IRF3-208	ENST00000594387	ZNF355P	Q9NSJ1	428 aa		13.56	□□□□□ -0.24
IRF3-208	ENST00000594387	NUBP2	Q9Y5Y2	271 aa		13.56	□□□□□ -0.24
IRF3-208	ENST00000594387	SMIM31	A0A1B0GVY4	71 aa		13.55	□□□□□ -0.24
IRF3-208	ENST00000594387	XRCC3	O43542	346 aa		13.55	□□□□□ -0.24
IRF3-208	ENST00000594387	SSX5	O60225	188 aa		13.55	□□□□□ -0.24
IRF3-208	ENST00000594387	HLA-DQB1	P01920	261 aa		13.55	□□□□□ -0.24
IRF3-208	ENST00000594387	DUT	P33316	252 aa	Known RBP	13.55	□□□□□ -0.24
IRF3-208	ENST00000594387	CRIP2	P52943	208 aa	Predicted RBP	13.55	□□□□□ -0.24
IRF3-208	ENST00000594387	DEFB136	Q30KP8	78 aa		13.55	□□□□□ -0.24
IRF3-208	ENST00000594387	TMEM177	Q53S58	311 aa		13.55	□□□□□ -0.24
IRF3-208	ENST00000594387	SAMD12	Q8N8I0	201 aa		13.55	□□□□□ -0.24
IRF3-208	ENST00000594387	ZNF491	Q8N8L2	437 aa		13.55	□□□□□ -0.24
IRF3-208	ENST00000594387	OR11H1	Q8NG94	326 aa		13.55	□□□□□ -0.24
IRF3-208	ENST00000594387	OSR1	Q8TAX0	266 aa	Predicted RBP	13.55	□□□□□ -0.24
IRF3-208	ENST00000594387	KCTD12	Q96CX2	325 aa	Known RBP	13.55	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms