RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 C18orf12Q96KH6 178 aa18.14■□□□□ 0.49
ATG4D-209ENST00000588857 PRELID3BQ9Y3B1 194 aa18.14■□□□□ 0.49
ATG4D-209ENST00000588857 F8P00451 2351 aa18.14■□□□□ 0.49
ATG4D-209ENST00000588857 CELSR1Q9NYQ6 3014 aa18.14■□□□□ 0.49
ATG4D-209ENST00000588857 HIVEP1P15822 2718 aa18.14■□□□□ 0.49
ATG4D-209ENST00000588857 OR2A4O95047 310 aa18.13■□□□□ 0.49
ATG4D-209ENST00000588857 THBS3P49746 956 aa18.13■□□□□ 0.49
ATG4D-209ENST00000588857 RAP2BP61225 183 aa18.13■□□□□ 0.49
ATG4D-209ENST00000588857 C1orf229Q6ZS94 237 aaPredicted RBP18.13■□□□□ 0.49
ATG4D-209ENST00000588857 ZNF833PQ6ZTB9 187 aa18.13■□□□□ 0.49
ATG4D-209ENST00000588857 LYZL2Q7Z4W2 148 aa18.13■□□□□ 0.49
ATG4D-209ENST00000588857 SELENOHQ8IZQ5 122 aaKnown RBP18.13■□□□□ 0.49
ATG4D-209ENST00000588857 SPAG16Q8N0X2 631 aa18.13■□□□□ 0.49
ATG4D-209ENST00000588857 CD300LFQ8TDQ1 290 aa18.13■□□□□ 0.49
ATG4D-209ENST00000588857 RBPMSQ93062 196 aaKnown RBP18.13■□□□□ 0.49
ATG4D-209ENST00000588857 OR2A7Q96R45 310 aa18.13■□□□□ 0.49
ATG4D-209ENST00000588857 PCGF1Q9BSM1 259 aa18.13■□□□□ 0.49
ATG4D-209ENST00000588857 SIRPDQ9H106 197 aa18.13■□□□□ 0.49
ATG4D-209ENST00000588857 UNKLQ9H9P5 680 aaKnown RBP18.13■□□□□ 0.49
ATG4D-209ENST00000588857 FAM212BQ9NTI7 297 aaPredicted RBP18.13■□□□□ 0.49
ATG4D-209ENST00000588857 TOX4O94842 621 aa18.13■□□□□ 0.49
ATG4D-209ENST00000588857 IGLV1-47P01700 117 aa18.13■□□□□ 0.49
ATG4D-209ENST00000588857 LINC00205P59089 165 aa18.13■□□□□ 0.49
ATG4D-209ENST00000588857 HLA-DRB5Q30154 266 aa18.13■□□□□ 0.49
ATG4D-209ENST00000588857 NCR3LG1Q68D85 454 aa18.13■□□□□ 0.49
ATG4D-209ENST00000588857 SLC35G3Q8N808 338 aa18.13■□□□□ 0.49
ATG4D-209ENST00000588857 AMMECR1Q9Y4X0 333 aaPredicted RBP18.13■□□□□ 0.49
ATG4D-209ENST00000588857 INSIG2Q9Y5U4 225 aa18.13■□□□□ 0.49
ATG4D-209ENST00000588857 DUXBA0A1W2PPF3 345 aa18.12■□□□□ 0.49
ATG4D-209ENST00000588857 RPA2P15927 270 aa18.12■□□□□ 0.49
ATG4D-209ENST00000588857 LPAR6P43657 344 aa18.12■□□□□ 0.49
ATG4D-209ENST00000588857 ZNF585BQ52M93 769 aa18.12■□□□□ 0.49
ATG4D-209ENST00000588857 GGNBP1Q5YKI7 109 aa18.12■□□□□ 0.49
ATG4D-209ENST00000588857 FAM71F2Q6NXP2 309 aa18.12■□□□□ 0.49
ATG4D-209ENST00000588857 OR11H6Q8NGC7 330 aa18.12■□□□□ 0.49
ATG4D-209ENST00000588857 SEC22AQ96IW7 307 aa18.12■□□□□ 0.49
ATG4D-209ENST00000588857 TMED3Q9Y3Q3 217 aa18.12■□□□□ 0.49
ATG4D-209ENST00000588857 B4DSR2 109 aa18.11■□□□□ 0.49
ATG4D-209ENST00000588857 MSMBP08118 114 aa18.11■□□□□ 0.49
ATG4D-209ENST00000588857 KIR2DS2P43631 304 aa18.11■□□□□ 0.49
ATG4D-209ENST00000588857 ZNF137PP52743 207 aa18.11■□□□□ 0.49
ATG4D-209ENST00000588857 BUB1B-PAK6H3BSN5 160 aa18.1■□□□□ 0.49
ATG4D-209ENST00000588857 BOLA2-SMG1P6H3BVE0 249 aa18.1■□□□□ 0.49
ATG4D-209ENST00000588857 RAMP3O60896 148 aa18.1■□□□□ 0.49
ATG4D-209ENST00000588857 FCGR3BO75015 233 aa18.1■□□□□ 0.49
ATG4D-209ENST00000588857 ARG1P05089 322 aa18.1■□□□□ 0.49
ATG4D-209ENST00000588857 CYCSP99999 105 aaKnown RBP18.1■□□□□ 0.49
ATG4D-209ENST00000588857 LOXL1Q08397 574 aaPredicted RBP18.1■□□□□ 0.49
ATG4D-209ENST00000588857 ZNF816Q0VGE8 651 aaPredicted RBP18.1■□□□□ 0.49
ATG4D-209ENST00000588857 ZFP69Q49AA0 526 aa18.1■□□□□ 0.49
ATG4D-209ENST00000588857 OR2T35Q8NGX2 323 aa18.1■□□□□ 0.49
ATG4D-209ENST00000588857 ST6GALNAC6Q969X2 333 aa18.1■□□□□ 0.49
ATG4D-209ENST00000588857 REG4Q9BYZ8 158 aa18.1■□□□□ 0.49
ATG4D-209ENST00000588857 ITPR3Q14573 2671 aa18.1■□□□□ 0.49
ATG4D-209ENST00000588857 A0A096LNT2 108 aa18.09■□□□□ 0.49
ATG4D-209ENST00000588857 RNF223E7ERA6 249 aa18.09■□□□□ 0.49
ATG4D-209ENST00000588857 ATG12O94817 140 aa18.09■□□□□ 0.49
ATG4D-209ENST00000588857 VDAC1P21796 283 aa18.09■□□□□ 0.49
ATG4D-209ENST00000588857 SRSF4Q08170 494 aaKnown RBP18.09■□□□□ 0.49
ATG4D-209ENST00000588857 KLRD1Q13241 179 aa18.09■□□□□ 0.49
ATG4D-209ENST00000588857 RNASE11Q8TAA1 199 aaKnown RBP18.09■□□□□ 0.49
ATG4D-209ENST00000588857 DDB2Q92466 427 aa18.09■□□□□ 0.49
ATG4D-209ENST00000588857 OR10C1Q96KK4 312 aa18.09■□□□□ 0.49
ATG4D-209ENST00000588857 Q96MF0 132 aa18.09■□□□□ 0.49
ATG4D-209ENST00000588857 VPS13CQ709C8 3753 aa18.09■□□□□ 0.49
ATG4D-209ENST00000588857 MPTX1A8MV57 137 aa18.08■□□□□ 0.49
ATG4D-209ENST00000588857 SMLR1H3BR10 107 aa18.08■□□□□ 0.49
ATG4D-209ENST00000588857 RBFOX2O43251 390 aaKnown RBP eCLIP18.08■□□□□ 0.49
ATG4D-209ENST00000588857 CT45A6P0DMU7 189 aa18.08■□□□□ 0.49
ATG4D-209ENST00000588857 CT45A5P0DMU8 189 aa18.08■□□□□ 0.49
ATG4D-209ENST00000588857 CT45A7P0DMV0 189 aa18.08■□□□□ 0.49
ATG4D-209ENST00000588857 MMP9P14780 707 aa18.08■□□□□ 0.49
ATG4D-209ENST00000588857 REG1BP48304 166 aa18.08■□□□□ 0.49
ATG4D-209ENST00000588857 BRWD1-AS2P59051 145 aa18.08■□□□□ 0.49
ATG4D-209ENST00000588857 IAH1Q2TAA2 248 aaPredicted RBP18.08■□□□□ 0.49
ATG4D-209ENST00000588857 TGIF2LXQ8IUE1 241 aa18.08■□□□□ 0.49
ATG4D-209ENST00000588857 ZNF383Q8NA42 475 aa18.08■□□□□ 0.49
ATG4D-209ENST00000588857 OR4P4Q8NGL7 312 aa18.08■□□□□ 0.49
ATG4D-209ENST00000588857 WDR89Q96FK6 387 aaPredicted RBP18.08■□□□□ 0.49
ATG4D-209ENST00000588857 C1orf159Q96HA4 380 aa18.08■□□□□ 0.49
ATG4D-209ENST00000588857 C2orf50Q96LR7 162 aa18.08■□□□□ 0.49
ATG4D-209ENST00000588857 TMUB1Q9BVT8 246 aa18.08■□□□□ 0.49
ATG4D-209ENST00000588857 MRPL20Q9BYC9 149 aaKnown RBP18.08■□□□□ 0.49
ATG4D-209ENST00000588857 TEP1Q99973 2627 aaKnown RBP18.08■□□□□ 0.48
ATG4D-209ENST00000588857 HOXB4P17483 251 aaPredicted RBP18.08■□□□□ 0.48
ATG4D-209ENST00000588857 HTR1DP28221 377 aa18.08■□□□□ 0.48
ATG4D-209ENST00000588857 AKR1C2P52895 323 aa18.08■□□□□ 0.48
ATG4D-209ENST00000588857 PAX8Q06710 450 aa18.08■□□□□ 0.48
ATG4D-209ENST00000588857 HCP5Q6MZN7 132 aa18.08■□□□□ 0.48
ATG4D-209ENST00000588857 KRTAP1-3Q8IUG1 177 aa18.08■□□□□ 0.48
ATG4D-209ENST00000588857 WFDC11Q8NEX6 87 aa18.08■□□□□ 0.48
ATG4D-209ENST00000588857 OR4S2Q8NH73 311 aa18.08■□□□□ 0.48
ATG4D-209ENST00000588857 TBX15Q96SF7 602 aa18.08■□□□□ 0.48
ATG4D-209ENST00000588857 NMES1Q9C002 83 aa18.08■□□□□ 0.48
ATG4D-209ENST00000588857 GSKIPQ9P0R6 139 aa18.08■□□□□ 0.48
ATG4D-209ENST00000588857 ZNF469Q96JG9 3925 aaPredicted RBP18.07■□□□□ 0.48
ATG4D-209ENST00000588857 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP18.07■□□□□ 0.489e-7■■■□□ 18.2
ATG4D-209ENST00000588857 RNASEK-C17orf49H0YIS7 233 aa18.07■□□□□ 0.48
ATG4D-209ENST00000588857 S1PR2O95136 353 aa18.07■□□□□ 0.48
ATG4D-209ENST00000588857 HPRT1P00492 218 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms