RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 BTN3A2P78410 334 aa1.27□□□□□ -2.21
SS18-214ENST00000580003 MESTQ5EB52 335 aa1.27□□□□□ -2.21
SS18-214ENST00000580003 TMEM208Q9BTX3 173 aa1.27□□□□□ -2.21
SS18-214ENST00000580003 VCX3BQ9H321 246 aa1.27□□□□□ -2.21
SS18-214ENST00000580003 CST9LQ9H4G1 147 aa1.27□□□□□ -2.21
SS18-214ENST00000580003 NPATQ14207 1427 aa1.26□□□□□ -2.21
SS18-214ENST00000580003 CRPP02741 224 aa1.26□□□□□ -2.21
SS18-214ENST00000580003 PVALBP20472 110 aaPredicted RBP1.26□□□□□ -2.21
SS18-214ENST00000580003 CCR7P32248 378 aa1.26□□□□□ -2.21
SS18-214ENST00000580003 RBM11P57052 281 aaKnown RBP1.26□□□□□ -2.21
SS18-214ENST00000580003 SYCP1Q15431 976 aa1.26□□□□□ -2.21
SS18-214ENST00000580003 SPATA31B1PQ5VZV4 182 aa1.26□□□□□ -2.21
SS18-214ENST00000580003 DAND5Q8N907 189 aa1.26□□□□□ -2.21
SS18-214ENST00000580003 KIAA2026Q5HYC2 2103 aa1.25□□□□□ -2.21
SS18-214ENST00000580003 DSCAMO60469 2012 aa1.25□□□□□ -2.21
SS18-214ENST00000580003 KLRC4O43908 158 aa1.25□□□□□ -2.21
SS18-214ENST00000580003 S100A9P06702 114 aaKnown RBP1.25□□□□□ -2.21
SS18-214ENST00000580003 GP1BAP07359 652 aa1.25□□□□□ -2.21
SS18-214ENST00000580003 CCR2P41597 374 aa1.25□□□□□ -2.21
SS18-214ENST00000580003 CDK9P50750 372 aaKnown RBP1.25□□□□□ -2.21
SS18-214ENST00000580003 SLC36A2Q495M3 483 aa1.25□□□□□ -2.21
SS18-214ENST00000580003 SPATA12Q7Z6I5 190 aa1.25□□□□□ -2.21
SS18-214ENST00000580003 KTN1-AS1Q86SY8 53 aa1.25□□□□□ -2.21
SS18-214ENST00000580003 OR51T1Q8NGJ9 327 aa1.25□□□□□ -2.21
SS18-214ENST00000580003 SLC7A6Q92536 515 aa1.25□□□□□ -2.21
SS18-214ENST00000580003 TLCD1Q96CP7 247 aa1.25□□□□□ -2.21
SS18-214ENST00000580003 LOC100506127A0A0U1RQW1 187 aa1.24□□□□□ -2.21
SS18-214ENST00000580003 CD79BP40259 229 aa1.24□□□□□ -2.21
SS18-214ENST00000580003 RPL27AP46776 148 aaKnown RBP1.24□□□□□ -2.21
SS18-214ENST00000580003 GABRA2P47869 451 aa1.24□□□□□ -2.21
SS18-214ENST00000580003 PLCXD2Q0VAA5 305 aa1.24□□□□□ -2.21
SS18-214ENST00000580003 CLEC12BQ2HXU8 276 aa1.24□□□□□ -2.21
SS18-214ENST00000580003 Q3ZCU0 254 aa1.24□□□□□ -2.21
SS18-214ENST00000580003 RPS19BP1Q86WX3 136 aaKnown RBP1.24□□□□□ -2.21
SS18-214ENST00000580003 BAP18Q8IXM2 172 aa1.24□□□□□ -2.21
SS18-214ENST00000580003 ATP6V1C2Q8NEY4 427 aa1.24□□□□□ -2.21
SS18-214ENST00000580003 RNASEH2CQ8TDP1 164 aaKnown RBP1.24□□□□□ -2.21
SS18-214ENST00000580003 CPNE2Q96FN4 548 aaPredicted RBP1.24□□□□□ -2.21
SS18-214ENST00000580003 TMEM222Q9H0R3 208 aa1.24□□□□□ -2.21
SS18-214ENST00000580003 ASCL3Q9NQ33 180 aa1.24□□□□□ -2.21
SS18-214ENST00000580003 CHD2O14647 1828 aaKnown RBP1.24□□□□□ -2.21
SS18-214ENST00000580003 TRAV8-1A0A0A6YYK1 113 aa1.23□□□□□ -2.21
SS18-214ENST00000580003 MRPS14O60783 128 aaKnown RBP1.23□□□□□ -2.21
SS18-214ENST00000580003 IFNGR2P38484 337 aa1.23□□□□□ -2.21
SS18-214ENST00000580003 TMEM267Q0VDI3 215 aaPredicted RBP1.23□□□□□ -2.21
SS18-214ENST00000580003 LCN8Q6JVE9 175 aa1.23□□□□□ -2.21
SS18-214ENST00000580003 LYZL1Q6UWQ5 148 aa1.23□□□□□ -2.21
SS18-214ENST00000580003 FP248Q71RG6 208 aaPredicted RBP1.23□□□□□ -2.21
SS18-214ENST00000580003 LRRC34Q8IZ02 419 aa1.23□□□□□ -2.21
SS18-214ENST00000580003 MED9Q9NWA0 146 aa1.23□□□□□ -2.21
SS18-214ENST00000580003 EMC3Q9P0I2 261 aa1.23□□□□□ -2.21
SS18-214ENST00000580003 NUP153P49790 1475 aaKnown RBP1.23□□□□□ -2.21
SS18-214ENST00000580003 GOLGA8QA0A0J9YX86 632 aa1.22□□□□□ -2.21
SS18-214ENST00000580003 H2BFSP57053 126 aa1.22□□□□□ -2.21
SS18-214ENST00000580003 METTL9Q9H1A3 318 aa1.22□□□□□ -2.21
SS18-214ENST00000580003 AGPAT3Q9NRZ7 376 aa1.22□□□□□ -2.21
SS18-214ENST00000580003 HMSDA8MTL9 139 aa1.21□□□□□ -2.22
SS18-214ENST00000580003 SERPINA7P05543 415 aa1.21□□□□□ -2.22
SS18-214ENST00000580003 SYT1P21579 422 aa1.21□□□□□ -2.22
SS18-214ENST00000580003 F8A1P23610 371 aa1.21□□□□□ -2.22
SS18-214ENST00000580003 C1orf174Q8IYL3 243 aa1.21□□□□□ -2.22
SS18-214ENST00000580003 OR13C8Q8NGS7 320 aa1.21□□□□□ -2.22
SS18-214ENST00000580003 MS4A6EQ96DS6 147 aa1.21□□□□□ -2.22
SS18-214ENST00000580003 POLR3HQ9Y535 204 aaPredicted RBP1.21□□□□□ -2.22
SS18-214ENST00000580003 NUMA1Q14980 2115 aa1.21□□□□□ -2.22
SS18-214ENST00000580003 IGKV2D-26A0A0A0MRZ7 120 aa1.2□□□□□ -2.22
SS18-214ENST00000580003 EMP1P54849 157 aa1.2□□□□□ -2.22
SS18-214ENST00000580003 HOXC5Q00444 222 aa1.2□□□□□ -2.22
SS18-214ENST00000580003 CDK5R1Q15078 307 aa1.2□□□□□ -2.22
SS18-214ENST00000580003 ZNF705AQ6ZN79 300 aaPredicted RBP1.2□□□□□ -2.22
SS18-214ENST00000580003 OR52E4Q8NGH9 312 aa1.2□□□□□ -2.22
SS18-214ENST00000580003 OR1L8Q8NGR8 309 aa1.2□□□□□ -2.22
SS18-214ENST00000580003 STOML3Q8TAV4 291 aa1.2□□□□□ -2.22
SS18-214ENST00000580003 Q8WTZ3 238 aa1.2□□□□□ -2.22
SS18-214ENST00000580003 SFRP2Q96HF1 295 aa1.2□□□□□ -2.22
SS18-214ENST00000580003 PARVAQ9NVD7 372 aa1.2□□□□□ -2.22
SS18-214ENST00000580003 KLK5Q9Y337 293 aaPredicted RBP1.2□□□□□ -2.22
SS18-214ENST00000580003 DAPL1A0PJW8 107 aa1.19□□□□□ -2.22
SS18-214ENST00000580003 CIAO1O76071 339 aa1.19□□□□□ -2.22
SS18-214ENST00000580003 SNAP25P60880 206 aa1.19□□□□□ -2.22
SS18-214ENST00000580003 LGALS9BQ3B8N2 356 aa1.19□□□□□ -2.22
SS18-214ENST00000580003 SLC36A1Q7Z2H8 476 aa1.19□□□□□ -2.22
SS18-214ENST00000580003 OR5AK3PQ8NH89 298 aa1.19□□□□□ -2.22
SS18-214ENST00000580003 TMA16Q96EY4 203 aaKnown RBP1.19□□□□□ -2.22
SS18-214ENST00000580003 NMNAT3Q96T66 252 aa1.19□□□□□ -2.22
SS18-214ENST00000580003 ADAT1Q9BUB4 502 aaKnown RBP1.19□□□□□ -2.22
SS18-214ENST00000580003 TIMM9Q9Y5J7 89 aa1.19□□□□□ -2.22
SS18-214ENST00000580003 GOLGA8RI6L899 631 aa1.18□□□□□ -2.22
SS18-214ENST00000580003 M0R381 172 aa1.18□□□□□ -2.22
SS18-214ENST00000580003 PLA2G10O15496 165 aa1.18□□□□□ -2.22
SS18-214ENST00000580003 RPSAP08865 295 aaKnown RBP1.18□□□□□ -2.22
SS18-214ENST00000580003 ALDH3A1P30838 453 aa1.18□□□□□ -2.22
SS18-214ENST00000580003 TMEM33P57088 247 aa1.18□□□□□ -2.22
SS18-214ENST00000580003 C7orf65Q6ZTY9 151 aa1.18□□□□□ -2.22
SS18-214ENST00000580003 COPS6Q7L5N1 327 aa1.18□□□□□ -2.22
SS18-214ENST00000580003 MBD3L1Q8WWY6 194 aa1.18□□□□□ -2.22
SS18-214ENST00000580003 LRRC45Q96CN5 670 aa1.18□□□□□ -2.22
SS18-214ENST00000580003 DLG5Q8TDM6 1919 aa1.18□□□□□ -2.22
SS18-214ENST00000580003 WDR90Q96KV7 1748 aa1.18□□□□□ -2.22
SS18-214ENST00000580003 ZFHX2Q9C0A1 2572 aaPredicted RBP1.17□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 202.5 ms