RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 LRRC58Q96CX6 371 aa2.82□□□□□ -1.96
NUP88-208ENST00000574087 HDHD3Q9BSH5 251 aaPredicted RBP2.82□□□□□ -1.96
NUP88-208ENST00000574087 FAAP24Q9BTP7 215 aa2.82□□□□□ -1.96
NUP88-208ENST00000574087 EFCAB11Q9BUY7 163 aa2.82□□□□□ -1.96
NUP88-208ENST00000574087 SRMSQ9H3Y6 488 aa2.82□□□□□ -1.96
NUP88-208ENST00000574087 RNF122Q9H9V4 155 aa2.82□□□□□ -1.96
NUP88-208ENST00000574087 KCNJ16Q9NPI9 418 aa2.82□□□□□ -1.96
NUP88-208ENST00000574087 CYTL1Q9NRR1 136 aa2.82□□□□□ -1.96
NUP88-208ENST00000574087 C14orf105Q9NVL8 296 aa2.82□□□□□ -1.96
NUP88-208ENST00000574087 KCNIP1Q9NZI2 227 aa2.82□□□□□ -1.96
NUP88-208ENST00000574087 DOK5Q9P104 306 aa2.82□□□□□ -1.96
NUP88-208ENST00000574087 ERG28Q9UKR5 140 aa2.82□□□□□ -1.96
NUP88-208ENST00000574087 POMPQ9Y244 141 aa2.82□□□□□ -1.96
NUP88-208ENST00000574087 LSM5Q9Y4Y9 91 aaKnown RBP2.82□□□□□ -1.96
NUP88-208ENST00000574087 RFNGQ9Y644 331 aa2.82□□□□□ -1.96
NUP88-208ENST00000574087 U3KQ87 197 aa2.82□□□□□ -1.96
NUP88-208ENST00000574087 AGLP35573 1532 aa2.82□□□□□ -1.96
NUP88-208ENST00000574087 SAMD9LQ8IVG5 1584 aa2.82□□□□□ -1.96
NUP88-208ENST00000574087 UGGT1Q9NYU2 1555 aa2.82□□□□□ -1.96
NUP88-208ENST00000574087 IQGAP3Q86VI3 1631 aa2.82□□□□□ -1.96
NUP88-208ENST00000574087 TRAV30A0A087WSZ9 112 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 A0A087WUU8 490 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 TMEM189A5PLL7 270 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 C12orf77C9JDV5 145 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 UPK1AO00322 258 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 HMGB3O15347 200 aaKnown RBP2.81□□□□□ -1.96
NUP88-208ENST00000574087 GNG7O60262 68 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 ZNF324O75467 553 aaPredicted RBP2.81□□□□□ -1.96
NUP88-208ENST00000574087 CDS2O95674 445 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 PFN1P07737 140 aaKnown RBP2.81□□□□□ -1.96
NUP88-208ENST00000574087 USF1P22415 310 aaPredicted RBP2.81□□□□□ -1.96
NUP88-208ENST00000574087 RPA3P35244 121 aaPredicted RBP2.81□□□□□ -1.96
NUP88-208ENST00000574087 FBXW4P57775 412 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 ARG2P78540 354 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 RHOGP84095 191 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 INCA1Q0VD86 236 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 ST3GAL4Q11206 333 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 IHHQ14623 411 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 GNMTQ14749 295 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 QPRTQ15274 297 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 OR8B8Q15620 311 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 ACOT6Q3I5F7 207 aaPredicted RBP2.81□□□□□ -1.96
NUP88-208ENST00000574087 PYY3Q5JQD4 70 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 CLEC12AQ5QGZ9 265 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 TMEM69Q5SWH9 247 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 C6orf52Q5T4I8 152 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 C1orf195Q5TG92 126 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 GLYATQ6IB77 296 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 TNFAIP8L2Q6P589 184 aaPredicted RBP2.81□□□□□ -1.96
NUP88-208ENST00000574087 FAM231DQ6ZW35 169 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 VKORC1L1Q8N0U8 176 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 MUC15Q8N387 334 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 OR5K1Q8NHB7 308 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 MCFD2Q8NI22 146 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 DEDD2Q8WXF8 326 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 FGF14Q92915 247 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 DDIT4LQ96D03 193 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 BTN2A3PQ96KV6 586 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 PDCD1LG2Q9BQ51 273 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 DOHHQ9BU89 302 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 CDC42EP4Q9H3Q1 356 aaKnown RBP2.81□□□□□ -1.96
NUP88-208ENST00000574087 CWH43Q9H720 699 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 METTL17Q9H7H0 456 aaPredicted RBP2.81□□□□□ -1.96
NUP88-208ENST00000574087 VSIRQ9H7M9 311 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 DEC1Q9P2X7 70 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 TBX21Q9UL17 535 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 RAB22AQ9UL26 194 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 RNF11Q9Y3C5 154 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 KLF12Q9Y4X4 402 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 CEP170BQ9Y4F5 1589 aaPredicted RBP2.81□□□□□ -1.96
NUP88-208ENST00000574087 MYH6P13533 1939 aa2.81□□□□□ -1.96
NUP88-208ENST00000574087 DICER1Q9UPY3 1922 aaKnown RBP2.81□□□□□ -1.96
NUP88-208ENST00000574087 A0A1B0GUL6 1792 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 SPHKAPQ2M3C7 1700 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 ARHGEF28Q8N1W1 1705 aaKnown RBP2.8□□□□□ -1.96
NUP88-208ENST00000574087 ZCCHC11Q5TAX3 1644 aaKnown RBP2.8□□□□□ -1.96
NUP88-208ENST00000574087 MYO3AQ8NEV4 1616 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 NFAT5O94916 1531 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 MAGI3Q5TCQ9 1506 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 TOPBP1Q92547 1522 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 DLC1Q96QB1 1528 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 PXDNLA1KZ92 1463 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 TRAV39A0A0B4J263 110 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 E7EQ34 232 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 TNFRSF11BO00300 401 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 GABRPO00591 440 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 MRPS12O15235 138 aaKnown RBP2.8□□□□□ -1.96
NUP88-208ENST00000574087 SOX15O60248 233 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 SS18L1O75177 396 aaPredicted RBP2.8□□□□□ -1.96
NUP88-208ENST00000574087 LSM8O95777 96 aaKnown RBP2.8□□□□□ -1.96
NUP88-208ENST00000574087 IFNA7P01567 189 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 DBIP07108 87 aaKnown RBP2.8□□□□□ -1.96
NUP88-208ENST00000574087 FGF7P21781 194 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 CDK2P24941 298 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 CMPK1P30085 196 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 SRIP30626 198 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 GLRXP35754 106 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 TFPI2P48307 235 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 RAB5CP51148 216 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 CDK6Q00534 326 aa2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms