RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 LY6DQ14210 128 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 EDDM3AQ14507 147 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 ADIRFQ15847 76 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 PMCHL1Q16048 86 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 MPV17LQ2QL34 196 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 SLC25A35Q3KQZ1 300 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 LRRC37A5PQ49AS3 106 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 CT45A1Q5HYN5 189 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 C6orf226Q5I0X4 101 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 CXorf66Q5JRM2 361 aaPredicted RBP2.71□□□□□ -1.98
VPS35-208ENST00000568612 ZNF506Q5JVG8 444 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 CLEC12AQ5QGZ9 265 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 MUC21Q5SSG8 566 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 ZNF678Q5SXM1 525 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 GLYATL3Q5SZD4 288 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 FAM69BQ5VUD6 431 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 ACSM2BQ68CK6 577 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 TMEM215Q68D42 235 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 TXNRD3NBQ6F5E7 133 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 KCNIP4Q6PIL6 250 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 CBLN3Q6UW01 205 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 CEACAM20Q6UY09 585 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 LIN28BQ6ZN17 250 aaKnown RBP eCLIP2.71□□□□□ -1.98
VPS35-208ENST00000568612 Q6ZUT4 128 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 CEACAM19Q7Z692 300 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 HIST2H2ABQ8IUE6 130 aaPredicted RBP2.71□□□□□ -1.98
VPS35-208ENST00000568612 SLC35F2Q8IXU6 374 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 ZNF683Q8IZ20 524 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 ZDHHC22Q8N966 263 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 OR6T1Q8NGN1 323 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 OR1L4Q8NGR5 311 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 OR2K2Q8NGT1 345 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 OR4C3Q8NH37 302 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 OR10D3Q8NH80 312 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 ATP6V0E2Q8NHE4 81 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 ZNRF2Q8NHG8 242 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 CT45A3Q8NHU0 189 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 SYNPRQ8TBG9 265 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 FCAMRQ8WWV6 532 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 AQP3Q92482 292 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 TMEM54Q969K7 222 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 NEIL2Q969S2 332 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 ST6GALNAC6Q969X2 333 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 SLC25A38Q96DW6 304 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 SMIM19Q96E16 107 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 MMABQ96EY8 250 aaPredicted RBP2.71□□□□□ -1.98
VPS35-208ENST00000568612 ATXN7L3BQ96GX2 97 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 URB1-AS1Q96HZ7 61 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 RASL10BQ96S79 203 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 MYADMQ96S97 322 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 FEVQ99581 238 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 SPAG8Q99932 426 aaPredicted RBP2.71□□□□□ -1.98
VPS35-208ENST00000568612 HSPB9Q9BQS6 159 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 RTBDNQ9BSG5 229 aaPredicted RBP2.71□□□□□ -1.98
VPS35-208ENST00000568612 C16orf70Q9BSU1 422 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 GGTLC1Q9BX51 225 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 SAMD10Q9BYL1 202 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 NMNAT2Q9BZQ4 307 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 SIRPDQ9H106 197 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 TUBB1Q9H4B7 451 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 IKZF5Q9H5V7 419 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 SPANXB1Q9NS25 103 aaPredicted RBP2.71□□□□□ -1.98
VPS35-208ENST00000568612 SLC25A37Q9NYZ2 338 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 SIGLEC8Q9NYZ4 499 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 AK3Q9UIJ7 227 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 NOP16Q9Y3C1 178 aaKnown RBP2.71□□□□□ -1.98
VPS35-208ENST00000568612 LINC00312Q9Y6C7 94 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 ZNF780BQ9Y6R6 833 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 V9GYY9 64 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 PIKFYVEQ9Y2I7 2098 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 ADAMTSL1Q8N6G6 1762 aa2.71□□□□□ -1.98
VPS35-208ENST00000568612 CCDC88CQ9P219 2028 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 LOC102723996A0A087X1L8 192 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 SAA2-SAA4A0A096LPE2 208 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 TRAV1-2A0A0B4J238 106 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 RBFOX3A6NFN3 312 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 A6NIN4 97 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 FNDC10F2Z333 226 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 H3BRM9 83 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 CCDC179H3BU77 68 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 K7N7A8 449 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 M0R2Z0 102 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 RER1O15258 196 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 SYNGR1O43759 233 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 ZNF253O75346 499 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 ZNF217O75362 1048 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 DIRAS1O95057 198 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 LSM8O95777 96 aaKnown RBP2.7□□□□□ -1.98
VPS35-208ENST00000568612 CA3P07451 260 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 PRSS2P07478 247 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 LIMS3P0CW19 117 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 LIMS4P0CW20 117 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 SLC25A6P12236 298 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 PLA2G2AP14555 144 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 PVRP15151 417 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 RPL7P18124 248 aaKnown RBP2.7□□□□□ -1.98
VPS35-208ENST00000568612 SRD5A1P18405 259 aa2.7□□□□□ -1.98
VPS35-208ENST00000568612 MDKP21741 143 aaPredicted RBP2.7□□□□□ -1.98
VPS35-208ENST00000568612 HOXD3P31249 432 aaPredicted RBP2.7□□□□□ -1.98
VPS35-208ENST00000568612 DRD3P35462 400 aa2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms