RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 ACTBL2Q562R1 376 aa13.73□□□□□ -0.21
CLN3-217ENST00000565354 OR8H1Q8NGG4 311 aa13.73□□□□□ -0.21
CLN3-217ENST00000565354 SECTM1Q8WVN6 248 aa13.73□□□□□ -0.21
CLN3-217ENST00000565354 RASL11BQ9BPW5 248 aa13.73□□□□□ -0.21
CLN3-217ENST00000565354 A3GALT2U3KPV4 340 aa13.73□□□□□ -0.21
CLN3-217ENST00000565354 H0YJW9 148 aa13.72□□□□□ -0.21
CLN3-217ENST00000565354 GABARAPH6UMI1 98 aa13.72□□□□□ -0.21
CLN3-217ENST00000565354 TUSC2O75896 110 aa13.72□□□□□ -0.21
CLN3-217ENST00000565354 VDAC2P45880 294 aaPredicted RBP13.72□□□□□ -0.21
CLN3-217ENST00000565354 THBS3P49746 956 aa13.72□□□□□ -0.21
CLN3-217ENST00000565354 PROK1P58294 105 aa13.72□□□□□ -0.21
CLN3-217ENST00000565354 DYRK1AQ13627 763 aa13.72□□□□□ -0.21
CLN3-217ENST00000565354 MMDQ15546 238 aa13.72□□□□□ -0.21
CLN3-217ENST00000565354 OVCH2Q7RTZ1 564 aa13.72□□□□□ -0.21
CLN3-217ENST00000565354 FAM110DQ8TAY7 271 aaPredicted RBP13.72□□□□□ -0.21
CLN3-217ENST00000565354 ADTRPQ96IZ2 230 aa13.72□□□□□ -0.21
CLN3-217ENST00000565354 ZNF2Q9BSG1 426 aaPredicted RBP13.72□□□□□ -0.21
CLN3-217ENST00000565354 SLC5A7Q9GZV3 580 aa13.72□□□□□ -0.21
CLN3-217ENST00000565354 ZNF702PQ9H963 129 aa13.72□□□□□ -0.21
CLN3-217ENST00000565354 SLC35D1Q9NTN3 355 aa13.72□□□□□ -0.21
CLN3-217ENST00000565354 KIAA1456Q9P272 454 aa13.72□□□□□ -0.21
CLN3-217ENST00000565354 SIGLEC9Q9Y336 463 aa13.72□□□□□ -0.21
CLN3-217ENST00000565354 KMT2CQ8NEZ4 4911 aaKnown RBP13.71□□□□□ -0.21
CLN3-217ENST00000565354 IGKV1D-13A0A0B4J2D9 117 aa13.71□□□□□ -0.21
CLN3-217ENST00000565354 SH2D7A6NKC9 451 aaPredicted RBP13.71□□□□□ -0.21
CLN3-217ENST00000565354 PLXNB1O43157 2135 aa13.71□□□□□ -0.21
CLN3-217ENST00000565354 IFNA6P05013 189 aa13.71□□□□□ -0.21
CLN3-217ENST00000565354 IGKV1-13P0DP09 117 aa13.71□□□□□ -0.21
CLN3-217ENST00000565354 DGCR2P98153 550 aa13.71□□□□□ -0.21
CLN3-217ENST00000565354 C11orf88Q6PI97 169 aa13.71□□□□□ -0.21
CLN3-217ENST00000565354 TMEM17Q86X19 198 aa13.71□□□□□ -0.21
CLN3-217ENST00000565354 Q8N6K4 173 aa13.71□□□□□ -0.21
CLN3-217ENST00000565354 C5orf56Q8N8D9 126 aa13.71□□□□□ -0.21
CLN3-217ENST00000565354 OR5AN1Q8NGI8 311 aa13.71□□□□□ -0.21
CLN3-217ENST00000565354 OR6F1Q8NGZ6 308 aa13.71□□□□□ -0.21
CLN3-217ENST00000565354 GIMAP1Q8WWP7 306 aa13.71□□□□□ -0.21
CLN3-217ENST00000565354 KLK11Q9UBX7 282 aa13.71□□□□□ -0.21
CLN3-217ENST00000565354 MTFP1Q9UDX5 166 aa13.71□□□□□ -0.21
CLN3-217ENST00000565354 TET2Q6N021 2002 aaPredicted RBP13.7□□□□□ -0.22
CLN3-217ENST00000565354 PROP1O75360 226 aa13.7□□□□□ -0.22
CLN3-217ENST00000565354 RPS16P62249 146 aaKnown RBP13.7□□□□□ -0.22
CLN3-217ENST00000565354 TAGLNQ01995 201 aaKnown RBP13.7□□□□□ -0.22
CLN3-217ENST00000565354 RTL8BQ17RB0 113 aa13.7□□□□□ -0.22
CLN3-217ENST00000565354 RNASE10Q5GAN6 216 aaKnown RBP13.7□□□□□ -0.22
CLN3-217ENST00000565354 PDPNQ86YL7 162 aa13.7□□□□□ -0.22
CLN3-217ENST00000565354 LYSMD2Q8IV50 215 aa13.7□□□□□ -0.22
CLN3-217ENST00000565354 ZNF383Q8NA42 475 aa13.7□□□□□ -0.22
CLN3-217ENST00000565354 RBMXL1Q96E39 390 aaKnown RBP13.7□□□□□ -0.22
CLN3-217ENST00000565354 RBMX2Q9Y388 322 aaKnown RBP13.7□□□□□ -0.22
CLN3-217ENST00000565354 NOTCH3Q9UM47 2321 aa13.69□□□□□ -0.22
CLN3-217ENST00000565354 M0QYG6 137 aa13.69□□□□□ -0.22
CLN3-217ENST00000565354 CTDSPLO15194 276 aa13.69□□□□□ -0.22
CLN3-217ENST00000565354 NBR2O15453 112 aa13.69□□□□□ -0.22
CLN3-217ENST00000565354 VSIG10L2P0DP72 767 aa13.69□□□□□ -0.22
CLN3-217ENST00000565354 RRASP10301 218 aa13.69□□□□□ -0.22
CLN3-217ENST00000565354 F2RL1P55085 397 aa13.69□□□□□ -0.22
CLN3-217ENST00000565354 LINC00205P59089 165 aa13.69□□□□□ -0.22
CLN3-217ENST00000565354 TAS2R19P59542 299 aa13.69□□□□□ -0.22
CLN3-217ENST00000565354 SSBP1Q04837 148 aaKnown RBP13.69□□□□□ -0.22
CLN3-217ENST00000565354 PLGLAQ15195 96 aa13.69□□□□□ -0.22
CLN3-217ENST00000565354 C2orf68Q2NKX9 166 aa13.69□□□□□ -0.22
CLN3-217ENST00000565354 BEAN1Q3B7T3 259 aa13.69□□□□□ -0.22
CLN3-217ENST00000565354 PYDC2Q56P42 97 aa13.69□□□□□ -0.22
CLN3-217ENST00000565354 FOXB2Q5VYV0 432 aa13.69□□□□□ -0.22
CLN3-217ENST00000565354 KCTD9Q7L273 389 aa13.69□□□□□ -0.22
CLN3-217ENST00000565354 BVESQ8NE79 360 aa13.69□□□□□ -0.22
CLN3-217ENST00000565354 SMIM4Q8WVI0 70 aa13.69□□□□□ -0.22
CLN3-217ENST00000565354 BORCS5Q969J3 196 aa13.69□□□□□ -0.22
CLN3-217ENST00000565354 FLYWCH2Q96CP2 140 aaKnown RBP13.69□□□□□ -0.22
CLN3-217ENST00000565354 C5orf30Q96GV9 206 aa13.69□□□□□ -0.22
CLN3-217ENST00000565354 CCL28Q9NRJ3 127 aa13.69□□□□□ -0.22
CLN3-217ENST00000565354 LIN7CQ9NUP9 197 aaKnown RBP13.69□□□□□ -0.22
CLN3-217ENST00000565354 PRELID3BQ9Y3B1 194 aa13.69□□□□□ -0.22
CLN3-217ENST00000565354 AMY1AP04745 511 aa13.68□□□□□ -0.22
CLN3-217ENST00000565354 AMY2AP04746 511 aa13.68□□□□□ -0.22
CLN3-217ENST00000565354 CSF1P09603 554 aa13.68□□□□□ -0.22
CLN3-217ENST00000565354 TBPP20226 339 aa13.68□□□□□ -0.22
CLN3-217ENST00000565354 DUTP33316 252 aaKnown RBP13.68□□□□□ -0.22
CLN3-217ENST00000565354 SPANXN2Q5MJ10 180 aa13.68□□□□□ -0.22
CLN3-217ENST00000565354 DHRS11Q6UWP2 260 aa13.68□□□□□ -0.22
CLN3-217ENST00000565354 Q6ZS46 218 aa13.68□□□□□ -0.22
CLN3-217ENST00000565354 Q8N2B8 174 aa13.68□□□□□ -0.22
CLN3-217ENST00000565354 Q8N9W7 124 aa13.68□□□□□ -0.22
CLN3-217ENST00000565354 TMEM229BQ8NBD8 167 aa13.68□□□□□ -0.22
CLN3-217ENST00000565354 ZBTB34Q8NCN2 500 aa13.68□□□□□ -0.22
CLN3-217ENST00000565354 TCTEX1D2Q8WW35 142 aa13.68□□□□□ -0.22
CLN3-217ENST00000565354 TSNAXQ99598 290 aaKnown RBP13.68□□□□□ -0.22
CLN3-217ENST00000565354 HSD17B10Q99714 261 aaKnown RBP13.68□□□□□ -0.22
CLN3-217ENST00000565354 TAS2R8Q9NYW2 309 aa13.68□□□□□ -0.22
CLN3-217ENST00000565354 CD3DP04234 171 aa13.67□□□□□ -0.22
CLN3-217ENST00000565354 CNTFRP26992 372 aa13.67□□□□□ -0.22
CLN3-217ENST00000565354 TMEM95Q3KNT9 176 aa13.67□□□□□ -0.22
CLN3-217ENST00000565354 VAX1Q5SQQ9 334 aa13.67□□□□□ -0.22
CLN3-217ENST00000565354 SLC35E3Q7Z769 313 aa13.67□□□□□ -0.22
CLN3-217ENST00000565354 KLHDC1Q8N7A1 406 aa13.67□□□□□ -0.22
CLN3-217ENST00000565354 MOB3AQ96BX8 217 aa13.67□□□□□ -0.22
CLN3-217ENST00000565354 RITA1Q96K30 269 aa13.67□□□□□ -0.22
CLN3-217ENST00000565354 RNF5Q99942 180 aa13.67□□□□□ -0.22
CLN3-217ENST00000565354 LINC00473A8K010 186 aa13.66□□□□□ -0.22
CLN3-217ENST00000565354 G3V4G9 280 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms