RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 CMTM1Q8IZ96 169 aa13.36□□□□□ -0.27
VPS4A-202ENST00000562754 OR51H1Q8NH63 302 aa13.36□□□□□ -0.27
VPS4A-202ENST00000562754 DDB2Q92466 427 aa13.36□□□□□ -0.27
VPS4A-202ENST00000562754 ZNF48Q96MX3 618 aaPredicted RBP13.36□□□□□ -0.27
VPS4A-202ENST00000562754 HSD17B10Q99714 261 aaKnown RBP13.36□□□□□ -0.27
VPS4A-202ENST00000562754 NUBP2Q9Y5Y2 271 aa13.36□□□□□ -0.27
VPS4A-202ENST00000562754 IGHV3-72A0A0B4J1Y9 119 aa13.35□□□□□ -0.27
VPS4A-202ENST00000562754 H0YJW9 148 aa13.35□□□□□ -0.27
VPS4A-202ENST00000562754 FBP1P09467 338 aa13.35□□□□□ -0.27
VPS4A-202ENST00000562754 THBS3P49746 956 aa13.35□□□□□ -0.27
VPS4A-202ENST00000562754 HABP2Q14520 560 aaPredicted RBP13.35□□□□□ -0.27
VPS4A-202ENST00000562754 FBLN7Q53RD9 439 aa13.35□□□□□ -0.27
VPS4A-202ENST00000562754 CCDC144NLQ6NUI1 221 aa13.35□□□□□ -0.27
VPS4A-202ENST00000562754 ZNF66Q6ZN08 573 aa13.35□□□□□ -0.27
VPS4A-202ENST00000562754 MOB3BQ86TA1 216 aa13.35□□□□□ -0.27
VPS4A-202ENST00000562754 CENPSQ8N2Z9 138 aa13.35□□□□□ -0.27
VPS4A-202ENST00000562754 CCDC71LQ8N9Z2 235 aa13.35□□□□□ -0.27
VPS4A-202ENST00000562754 OR5AN1Q8NGI8 311 aa13.35□□□□□ -0.27
VPS4A-202ENST00000562754 TCTEX1D2Q8WW35 142 aa13.35□□□□□ -0.27
VPS4A-202ENST00000562754 MEGF9Q9H1U4 602 aa13.35□□□□□ -0.27
VPS4A-202ENST00000562754 CDC42EP3Q9UKI2 254 aa13.35□□□□□ -0.27
VPS4A-202ENST00000562754 FAM96BQ9Y3D0 163 aa13.35□□□□□ -0.27
VPS4A-202ENST00000562754 SVEP1Q4LDE5 3571 aa13.34□□□□□ -0.27
VPS4A-202ENST00000562754 CRYM-AS1A6NIL9 109 aa13.34□□□□□ -0.27
VPS4A-202ENST00000562754 MPPED1O15442 326 aa13.34□□□□□ -0.27
VPS4A-202ENST00000562754 H2AFB2P0C5Z0 115 aa13.34□□□□□ -0.27
VPS4A-202ENST00000562754 VSIG10L2P0DP72 767 aa13.34□□□□□ -0.27
VPS4A-202ENST00000562754 AKR1C4P17516 323 aa13.34□□□□□ -0.27
VPS4A-202ENST00000562754 ANXA7P20073 488 aaKnown RBP13.34□□□□□ -0.27
VPS4A-202ENST00000562754 BRWD1-AS2P59051 145 aa13.34□□□□□ -0.27
VPS4A-202ENST00000562754 OR2B11Q5JQS5 317 aa13.34□□□□□ -0.27
VPS4A-202ENST00000562754 SLC25A42Q86VD7 318 aa13.34□□□□□ -0.27
VPS4A-202ENST00000562754 CAPSLQ8WWF8 208 aa13.34□□□□□ -0.27
VPS4A-202ENST00000562754 ADTRPQ96IZ2 230 aa13.34□□□□□ -0.27
VPS4A-202ENST00000562754 BEX2Q9BXY8 128 aa13.34□□□□□ -0.27
VPS4A-202ENST00000562754 NAA60Q9H7X0 242 aa13.34□□□□□ -0.27
VPS4A-202ENST00000562754 VGLL3A8MV65 326 aa13.33□□□□□ -0.28
VPS4A-202ENST00000562754 VENTXO95231 258 aa13.33□□□□□ -0.28
VPS4A-202ENST00000562754 F2RP25116 425 aa13.33□□□□□ -0.28
VPS4A-202ENST00000562754 S100GP29377 79 aa13.33□□□□□ -0.28
VPS4A-202ENST00000562754 RAB25P57735 213 aa13.33□□□□□ -0.28
VPS4A-202ENST00000562754 SUPT4H1P63272 117 aaKnown RBP13.33□□□□□ -0.28
VPS4A-202ENST00000562754 CATR1Q13166 79 aa13.33□□□□□ -0.28
VPS4A-202ENST00000562754 OXA1LQ15070 435 aa13.33□□□□□ -0.28
VPS4A-202ENST00000562754 PLET1Q6UQ28 207 aa13.33□□□□□ -0.28
VPS4A-202ENST00000562754 CCBE1Q6UXH8 406 aaPredicted RBP13.33□□□□□ -0.28
VPS4A-202ENST00000562754 BEX1Q9HBH7 125 aa13.33□□□□□ -0.28
VPS4A-202ENST00000562754 SLC35D1Q9NTN3 355 aa13.33□□□□□ -0.28
VPS4A-202ENST00000562754 RNF212BA8MTL3 300 aa13.32□□□□□ -0.28
VPS4A-202ENST00000562754 SRD5A1P18405 259 aa13.32□□□□□ -0.28
VPS4A-202ENST00000562754 CD24P25063 80 aa13.32□□□□□ -0.28
VPS4A-202ENST00000562754 RAB13P51153 203 aa13.32□□□□□ -0.28
VPS4A-202ENST00000562754 MECP2P51608 486 aaKnown RBP13.32□□□□□ -0.28
VPS4A-202ENST00000562754 DYNLT3P51808 116 aa13.32□□□□□ -0.28
VPS4A-202ENST00000562754 TAS2R31P59538 309 aa13.32□□□□□ -0.28
VPS4A-202ENST00000562754 DHODHQ02127 395 aa13.32□□□□□ -0.28
VPS4A-202ENST00000562754 PPP1R1AQ13522 171 aa13.32□□□□□ -0.28
VPS4A-202ENST00000562754 LRRC75BQ2VPJ9 315 aa13.32□□□□□ -0.28
VPS4A-202ENST00000562754 PIFOQ8TCI5 191 aa13.32□□□□□ -0.28
VPS4A-202ENST00000562754 TP53RKQ96S44 253 aa13.32□□□□□ -0.28
VPS4A-202ENST00000562754 MARVELD1Q9BSK0 173 aa13.32□□□□□ -0.28
VPS4A-202ENST00000562754 PRDM13Q9H4Q3 707 aa13.32□□□□□ -0.28
VPS4A-202ENST00000562754 LIN7CQ9NUP9 197 aaKnown RBP13.32□□□□□ -0.28
VPS4A-202ENST00000562754 WASHC3Q9Y3C0 194 aa13.32□□□□□ -0.28
VPS4A-202ENST00000562754 TEP1Q99973 2627 aaKnown RBP13.32□□□□□ -0.28
VPS4A-202ENST00000562754 MXRA5Q9NR99 2828 aa13.31□□□□□ -0.28
VPS4A-202ENST00000562754 TEX13DA0A0J9YY54 714 aaPredicted RBP13.31□□□□□ -0.28
VPS4A-202ENST00000562754 FAM90A9PA6NNJ1 464 aa13.31□□□□□ -0.28
VPS4A-202ENST00000562754 H0Y980 276 aa13.31□□□□□ -0.28
VPS4A-202ENST00000562754 RAMP3O60896 148 aa13.31□□□□□ -0.28
VPS4A-202ENST00000562754 FCGR3BO75015 233 aa13.31□□□□□ -0.28
VPS4A-202ENST00000562754 PEX14O75381 377 aa13.31□□□□□ -0.28
VPS4A-202ENST00000562754 APOA2P02652 100 aa13.31□□□□□ -0.28
VPS4A-202ENST00000562754 SNRNP70P08621 437 aaKnown RBP13.31□□□□□ -0.28
VPS4A-202ENST00000562754 OR5AC1P0C628 307 aa13.31□□□□□ -0.28
VPS4A-202ENST00000562754 CD1BP29016 333 aa13.31□□□□□ -0.28
VPS4A-202ENST00000562754 UBE2MP61081 183 aaKnown RBP13.31□□□□□ -0.28
VPS4A-202ENST00000562754 TMEM128Q5BJH2 165 aa13.31□□□□□ -0.28
VPS4A-202ENST00000562754 SPAG16Q8N0X2 631 aa13.31□□□□□ -0.28
VPS4A-202ENST00000562754 SIGLECL1Q8N7X8 197 aa13.31□□□□□ -0.28
VPS4A-202ENST00000562754 CHPT1Q8WUD6 406 aa13.31□□□□□ -0.28
VPS4A-202ENST00000562754 SSX3Q99909 188 aa13.31□□□□□ -0.28
VPS4A-202ENST00000562754 PRELID3BQ9Y3B1 194 aa13.31□□□□□ -0.28
VPS4A-202ENST00000562754 C3orf85A0A1B0GTC6 90 aa13.3□□□□□ -0.28
VPS4A-202ENST00000562754 INMT-MINDY4F8WBC2 141 aa13.3□□□□□ -0.28
VPS4A-202ENST00000562754 IGKV1D-33P01593 117 aa13.3□□□□□ -0.28
VPS4A-202ENST00000562754 IGKV1-33P01594 117 aa13.3□□□□□ -0.28
VPS4A-202ENST00000562754 IGKV1-16P04430 117 aa13.3□□□□□ -0.28
VPS4A-202ENST00000562754 OR4E1P0C645 316 aa13.3□□□□□ -0.28
VPS4A-202ENST00000562754 BRS3P32247 399 aa13.3□□□□□ -0.28
VPS4A-202ENST00000562754 KIR2DS2P43631 304 aa13.3□□□□□ -0.28
VPS4A-202ENST00000562754 ARHGDIBP52566 201 aa13.3□□□□□ -0.28
VPS4A-202ENST00000562754 AANATQ16613 207 aa13.3□□□□□ -0.28
VPS4A-202ENST00000562754 TRIM16LQ309B1 348 aa13.3□□□□□ -0.28
VPS4A-202ENST00000562754 SP6Q3SY56 376 aa13.3□□□□□ -0.28
VPS4A-202ENST00000562754 ZNF585BQ52M93 769 aa13.3□□□□□ -0.28
VPS4A-202ENST00000562754 Q6YL49 198 aa13.3□□□□□ -0.28
VPS4A-202ENST00000562754 PDPNQ86YL7 162 aa13.3□□□□□ -0.28
VPS4A-202ENST00000562754 SGPP2Q8IWX5 399 aa13.3□□□□□ -0.28
VPS4A-202ENST00000562754 GALNT14Q96FL9 552 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms