RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 SLC25A47Q6Q0C1 308 aa11.28□□□□□ -0.6
CLK3-206ENST00000562078 ATOH7Q8N100 152 aa11.28□□□□□ -0.6
CLK3-206ENST00000562078 OR8B12Q8NGG6 310 aa11.28□□□□□ -0.6
CLK3-206ENST00000562078 ZNF596Q8TC21 504 aa11.28□□□□□ -0.6
CLK3-206ENST00000562078 SSC4DQ8WTU2 575 aa11.28□□□□□ -0.6
CLK3-206ENST00000562078 ODAMA1E959 279 aa11.28□□□□□ -0.6
CLK3-206ENST00000562078 OR5B21A6NL26 309 aa11.28□□□□□ -0.6
CLK3-206ENST00000562078 C21orf140B9A014 251 aa11.28□□□□□ -0.6
CLK3-206ENST00000562078 C20orf196Q8IYI0 205 aa11.28□□□□□ -0.6
CLK3-206ENST00000562078 SIGLECL1Q8N7X8 197 aa11.28□□□□□ -0.6
CLK3-206ENST00000562078 SCGB1C1Q8TD33 95 aa11.28□□□□□ -0.6
CLK3-206ENST00000562078 ABHD3Q8WU67 409 aa11.28□□□□□ -0.6
CLK3-206ENST00000562078 SLC35D1Q9NTN3 355 aa11.28□□□□□ -0.6
CLK3-206ENST00000562078 ELOVL5Q9NYP7 299 aa11.28□□□□□ -0.6
CLK3-206ENST00000562078 GVINP1Q7Z2Y8 2422 aa11.27□□□□□ -0.6
CLK3-206ENST00000562078 TMEM250H0YL14 139 aa11.27□□□□□ -0.61
CLK3-206ENST00000562078 VAMP5O95183 116 aa11.27□□□□□ -0.61
CLK3-206ENST00000562078 ID3Q02535 119 aa11.27□□□□□ -0.61
CLK3-206ENST00000562078 HIST3H3Q16695 136 aa11.27□□□□□ -0.61
CLK3-206ENST00000562078 SGMS2Q8NHU3 365 aa11.27□□□□□ -0.61
CLK3-206ENST00000562078 TMEM222Q9H0R3 208 aa11.27□□□□□ -0.61
CLK3-206ENST00000562078 MEGF9Q9H1U4 602 aa11.27□□□□□ -0.61
CLK3-206ENST00000562078 UBE2J1Q9Y385 318 aaPredicted RBP11.27□□□□□ -0.61
CLK3-206ENST00000562078 FAM186AA6NE01 2351 aa11.27□□□□□ -0.61
CLK3-206ENST00000562078 TNFSF11O14788 317 aa11.27□□□□□ -0.61
CLK3-206ENST00000562078 RER1O15258 196 aa11.27□□□□□ -0.61
CLK3-206ENST00000562078 MPPED1O15442 326 aa11.27□□□□□ -0.61
CLK3-206ENST00000562078 IGKV1D-33P01593 117 aa11.27□□□□□ -0.61
CLK3-206ENST00000562078 IGKV1-33P01594 117 aa11.27□□□□□ -0.61
CLK3-206ENST00000562078 FAHP16930 419 aa11.27□□□□□ -0.61
CLK3-206ENST00000562078 CDC34P49427 236 aaPredicted RBP11.27□□□□□ -0.61
CLK3-206ENST00000562078 RHOGP84095 191 aa11.27□□□□□ -0.61
CLK3-206ENST00000562078 SNAI3Q3KNW1 292 aa11.27□□□□□ -0.61
CLK3-206ENST00000562078 PRR27Q6MZM9 219 aa11.27□□□□□ -0.61
CLK3-206ENST00000562078 SELENOHQ8IZQ5 122 aaKnown RBP11.27□□□□□ -0.61
CLK3-206ENST00000562078 PINX1Q96BK5 328 aaKnown RBP11.27□□□□□ -0.61
CLK3-206ENST00000562078 SMIM12Q96EX1 92 aa11.27□□□□□ -0.61
CLK3-206ENST00000562078 UHRF2Q96PU4 802 aa11.27□□□□□ -0.61
CLK3-206ENST00000562078 TM2D1Q9BX74 207 aa11.27□□□□□ -0.61
CLK3-206ENST00000562078 CELSR3Q9NYQ7 3312 aa11.26□□□□□ -0.61
CLK3-206ENST00000562078 LOC102725191A0A1B0GVB3 256 aa11.26□□□□□ -0.61
CLK3-206ENST00000562078 C5orf63A6NC05 138 aa11.26□□□□□ -0.61
CLK3-206ENST00000562078 TLX3O43711 291 aaPredicted RBP11.26□□□□□ -0.61
CLK3-206ENST00000562078 P04436 131 aa11.26□□□□□ -0.61
CLK3-206ENST00000562078 EGR1P18146 543 aa11.26□□□□□ -0.61
CLK3-206ENST00000562078 NPBWR2P48146 333 aa11.26□□□□□ -0.61
CLK3-206ENST00000562078 PSMB3P49720 205 aa11.26□□□□□ -0.61
CLK3-206ENST00000562078 ZNF121P58317 390 aaPredicted RBP11.26□□□□□ -0.61
CLK3-206ENST00000562078 OR4A47Q6IF82 309 aa11.26□□□□□ -0.61
CLK3-206ENST00000562078 SGCZQ96LD1 299 aa11.26□□□□□ -0.61
CLK3-206ENST00000562078 SLC39A9Q9NUM3 307 aa11.26□□□□□ -0.61
CLK3-206ENST00000562078 ZNF586Q9NXT0 402 aa11.26□□□□□ -0.61
CLK3-206ENST00000562078 MRPS16Q9Y3D3 137 aaKnown RBP11.26□□□□□ -0.61
CLK3-206ENST00000562078 TBL2Q9Y4P3 447 aaKnown RBP11.26□□□□□ -0.61
CLK3-206ENST00000562078 DNAJC13O75165 2243 aa11.26□□□□□ -0.61
CLK3-206ENST00000562078 A0A0J9YW62 118 aa11.26□□□□□ -0.61
CLK3-206ENST00000562078 IGLC7A0M8Q6 106 aa11.26□□□□□ -0.61
CLK3-206ENST00000562078 PGPEP1LA6NFU8 196 aa11.26□□□□□ -0.61
CLK3-206ENST00000562078 NPIPA2E9PIF3 369 aa11.26□□□□□ -0.61
CLK3-206ENST00000562078 NPIPA3F8WFD2 350 aa11.26□□□□□ -0.61
CLK3-206ENST00000562078 GOSR1O95249 250 aa11.26□□□□□ -0.61
CLK3-206ENST00000562078 C1QTNF9P0C862 333 aa11.26□□□□□ -0.61
CLK3-206ENST00000562078 YPEL3P61236 119 aaPredicted RBP11.26□□□□□ -0.61
CLK3-206ENST00000562078 PHYHD1Q5SRE7 291 aa11.26□□□□□ -0.61
CLK3-206ENST00000562078 YRDCQ86U90 279 aaKnown RBP11.26□□□□□ -0.61
CLK3-206ENST00000562078 ZNF295-AS1Q8N0V1 137 aa11.26□□□□□ -0.61
CLK3-206ENST00000562078 RPP25LQ8N5L8 163 aaKnown RBP11.26□□□□□ -0.61
CLK3-206ENST00000562078 CCDC71LQ8N9Z2 235 aa11.26□□□□□ -0.61
CLK3-206ENST00000562078 ST6GALNAC3Q8NDV1 305 aa11.26□□□□□ -0.61
CLK3-206ENST00000562078 SPIN2AQ99865 258 aa11.26□□□□□ -0.61
CLK3-206ENST00000562078 SPIN2BQ9BPZ2 258 aa11.26□□□□□ -0.61
CLK3-206ENST00000562078 IGHV1-69-2A0A0G2JMI3 117 aa11.25□□□□□ -0.61
CLK3-206ENST00000562078 E9PLN8 166 aa11.25□□□□□ -0.61
CLK3-206ENST00000562078 GPX1P07203 203 aa11.25□□□□□ -0.61
CLK3-206ENST00000562078 FCGR2AP12318 317 aa11.25□□□□□ -0.61
CLK3-206ENST00000562078 NPPCP23582 126 aa11.25□□□□□ -0.61
CLK3-206ENST00000562078 ARL16Q0P5N6 197 aa11.25□□□□□ -0.61
CLK3-206ENST00000562078 SRXN1Q9BYN0 137 aa11.25□□□□□ -0.61
CLK3-206ENST00000562078 ZNF407Q9C0G0 2248 aa11.25□□□□□ -0.61
CLK3-206ENST00000562078 IGHV2-26A0A0B4J1V2 119 aa11.25□□□□□ -0.61
CLK3-206ENST00000562078 K7ERU9 68 aa11.25□□□□□ -0.61
CLK3-206ENST00000562078 SAP30O75446 220 aa11.25□□□□□ -0.61
CLK3-206ENST00000562078 ARR3P36575 388 aa11.25□□□□□ -0.61
CLK3-206ENST00000562078 ZNF133P52736 654 aaPredicted RBP11.25□□□□□ -0.61
CLK3-206ENST00000562078 TBC1D26Q86UD7 250 aa11.25□□□□□ -0.61
CLK3-206ENST00000562078 WFDC12Q8WWY7 111 aa11.25□□□□□ -0.61
CLK3-206ENST00000562078 PIGTQ969N2 578 aa11.25□□□□□ -0.61
CLK3-206ENST00000562078 TMEM56Q96MV1 263 aa11.25□□□□□ -0.61
CLK3-206ENST00000562078 SLC25A22Q9H936 323 aa11.25□□□□□ -0.61
CLK3-206ENST00000562078 NRN1Q9NPD7 142 aa11.25□□□□□ -0.61
CLK3-206ENST00000562078 PNRC2Q9NPJ4 139 aaKnown RBP11.25□□□□□ -0.61
CLK3-206ENST00000562078 TMEM56-RWDD3S4R434 201 aa11.25□□□□□ -0.61
CLK3-206ENST00000562078 ZNF891A8MT65 544 aaPredicted RBP11.24□□□□□ -0.61
CLK3-206ENST00000562078 RNF212BA8MTL3 300 aa11.24□□□□□ -0.61
CLK3-206ENST00000562078 TM4SF5O14894 197 aa11.24□□□□□ -0.61
CLK3-206ENST00000562078 MLNRO43193 412 aa11.24□□□□□ -0.61
CLK3-206ENST00000562078 RFPL3SP0C7P2 107 aa11.24□□□□□ -0.61
CLK3-206ENST00000562078 B3GALT5-AS1P59052 145 aa11.24□□□□□ -0.61
CLK3-206ENST00000562078 FOXL1Q12952 345 aa11.24□□□□□ -0.61
CLK3-206ENST00000562078 NMSQ5H8A3 153 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms