RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 TMEM250H0YL14 139 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 MKRN2OSH3BPM6 223 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP2.05□□□□□ -2.08
SPG11-223ENST00000560858 CLDN34H7C241 214 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 RHODO00212 210 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 PPP1R2P9O14990 202 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 CBR3O75828 277 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 KLF7O75840 302 aaPredicted RBP2.05□□□□□ -2.08
SPG11-223ENST00000560858 WISP2O76076 250 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 OR7C1O76099 320 aaPredicted RBP2.05□□□□□ -2.08
SPG11-223ENST00000560858 PTBP3O95758 552 aaKnown RBP2.05□□□□□ -2.08
SPG11-223ENST00000560858 IGKV1-39P01597 117 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 IGHEP01854 428 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 OPN1LWP04000 364 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 OPN1MWP04001 364 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 LCATP04180 440 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 TK1P04183 234 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 IGKV1D-39P04432 117 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 KLK3P07288 261 aaPredicted RBP2.05□□□□□ -2.08
SPG11-223ENST00000560858 SOD3P08294 240 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 P0C879 139 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 OPN1MW2P0DN77 364 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 OPN1MW3P0DN78 364 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 OR13C7P0DN81 318 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 MYF5P13349 255 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 HIST1H1BP16401 226 aaKnown RBP2.05□□□□□ -2.08
SPG11-223ENST00000560858 BCL3P20749 454 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 F2RP25116 425 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 S100A2P29034 98 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 HOXA6P31267 233 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 APLNRP35414 380 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 TAGLN2P37802 199 aaKnown RBP2.05□□□□□ -2.08
SPG11-223ENST00000560858 CEACAM6P40199 344 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 MDH2P40926 338 aaKnown RBP2.05□□□□□ -2.08
SPG11-223ENST00000560858 CD200P41217 278 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 RPS10P46783 165 aaKnown RBP2.05□□□□□ -2.08
SPG11-223ENST00000560858 NOVA1P51513 510 aaKnown RBP2.05□□□□□ -2.08
SPG11-223ENST00000560858 LBX1P52954 281 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 OR2B8PP59922 312 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 UBE2KP61086 200 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 RPL23AP62750 156 aaKnown RBP2.05□□□□□ -2.08
SPG11-223ENST00000560858 VAMP2P63027 116 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 DLK1P80370 383 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 SERF2P84101 59 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 ZNF154Q13106 437 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 PRDX4Q13162 271 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 TRA2AQ13595 282 aaKnown RBP eCLIP2.05□□□□□ -2.08
SPG11-223ENST00000560858 IL11RAQ14626 422 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 MSMO1Q15800 293 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 ZNF726P1Q15940 193 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 CEACAM21Q3KPI0 293 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 AKIRIN2Q53H80 203 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 TMEM41BQ5BJD5 291 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 IGSF11Q5DX21 431 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 CXorf66Q5JRM2 361 aaPredicted RBP2.05□□□□□ -2.08
SPG11-223ENST00000560858 NCMAPQ5T1S8 102 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 WDR25Q64LD2 544 aaPredicted RBP2.05□□□□□ -2.08
SPG11-223ENST00000560858 ZNF343Q6P1L6 599 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 DHRS13Q6UX07 377 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 SPNS3Q6ZMD2 512 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 ZNF600Q6ZNG1 722 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 SLC25A26Q70HW3 274 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 SSX7Q7RTT5 188 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 AAED1Q7RTV5 226 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 CENPVQ7Z7K6 275 aaPredicted RBP2.05□□□□□ -2.08
SPG11-223ENST00000560858 HAPLN4Q86UW8 402 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 ZNF429Q86V71 674 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 WDR5BQ86VZ2 330 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 STX12Q86Y82 276 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 CALHM1Q8IU99 346 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 TGIF2LYQ8IUE0 185 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 ZNF695Q8IW36 515 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 ZDHHC23Q8IYP9 409 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 CMTM1Q8IZ96 169 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 ZFP62Q8NB50 900 aaPredicted RBP2.05□□□□□ -2.08
SPG11-223ENST00000560858 SUMF1Q8NBK3 374 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 OR56B2PQ8NGI1 322 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 OR2Y1Q8NGV0 311 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 OR10D3Q8NH80 312 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 AKR7LQ8NHP1 331 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 FGFBP3Q8TAT2 258 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 MRPL30Q8TCC3 161 aaKnown RBP2.05□□□□□ -2.08
SPG11-223ENST00000560858 RNASEH2CQ8TDP1 164 aaKnown RBP2.05□□□□□ -2.08
SPG11-223ENST00000560858 CD300LFQ8TDQ1 290 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 SAP25Q8TEE9 199 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 SLAMF9Q96A28 289 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 CLDN23Q96B33 292 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 SGCZQ96LD1 299 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 RAB40CQ96S21 281 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 RARRES2Q99969 163 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 ABHD14AQ9BUJ0 271 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 RBM24Q9BX46 236 aaKnown RBP2.05□□□□□ -2.08
SPG11-223ENST00000560858 BCL2L14Q9BZR8 327 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 PKIBQ9C010 78 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 STRADBQ9C0K7 418 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 CTDSP1Q9GZU7 261 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 RIMS4Q9H426 269 aaPredicted RBP2.05□□□□□ -2.08
SPG11-223ENST00000560858 PLK3Q9H4B4 646 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 ZNF442Q9H7R0 627 aa2.05□□□□□ -2.08
SPG11-223ENST00000560858 ZNF665Q9H7R5 613 aa2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms