RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 NDUFB6O95139 128 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 NAPSAO96009 420 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 CD3DP04234 171 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 IL5P05113 134 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 LIPFP07098 398 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 FCGR3AP08637 254 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 FAM106CPP0CH98 169 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 PSG2P11465 335 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 COX6B1P14854 86 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 GIFP27352 417 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 HLA-DMAP28067 261 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 TAGLN2P37802 199 aaKnown RBP4.22□□□□□ -1.73
LDLR-209ENST00000558528 GABRA2P47869 451 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 PRRX1P54821 245 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 CCL8P80075 99 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 MADCAM1Q13477 382 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 MPPED2Q15777 294 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 LRRC10Q5BKY1 277 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 METTL11BQ5VVY1 283 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 Q6P435 159 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 ZNF880Q6PDB4 577 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 DHRS11Q6UWP2 260 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 WDR86Q86TI4 376 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 BIVMQ86UB2 503 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 TERB2Q8NHR7 220 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 NUDCD2Q8WVJ2 157 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 ASB13Q8WXK3 278 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 DVL3Q92997 716 aaPredicted RBP4.22□□□□□ -1.73
LDLR-209ENST00000558528 GALMQ96C23 342 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 SDSLQ96GA7 329 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 ZNF486Q96H40 463 aaPredicted RBP4.22□□□□□ -1.73
LDLR-209ENST00000558528 S1PR3Q99500 378 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 NKX3-1Q99801 234 aaPredicted RBP4.22□□□□□ -1.73
LDLR-209ENST00000558528 SULT4A1Q9BR01 284 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 GINS4Q9BRT9 223 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 ALKBH7Q9BT30 221 aaPredicted RBP4.22□□□□□ -1.73
LDLR-209ENST00000558528 TMEM165Q9HC07 324 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 EHFQ9NZC4 300 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 KCNIP3Q9Y2W7 256 aa4.22□□□□□ -1.73
LDLR-209ENST00000558528 ALPK2Q86TB3 2170 aa4.21□□□□□ -1.73
LDLR-209ENST00000558528 ZNF407Q9C0G0 2248 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 hADV38S2A0JD32 116 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 FAM172BPA6NC97 362 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 MEIS3P1A6NDR6 274 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 MFSD2BA6NFX1 497 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 LINC01548A6NM66 108 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 K7N7A8 449 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 SIRPB1O00241 398 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 FABP7O15540 132 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 NDUFB3O43676 98 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 PROP1O75360 226 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 NDUFA7O95182 113 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 PMP2P02689 132 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 APOHP02749 345 aaPredicted RBP4.21□□□□□ -1.74
LDLR-209ENST00000558528 MT-ND4P03905 459 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 ZNF735P0CB33 412 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 NHLRC4P0CG21 123 aaPredicted RBP4.21□□□□□ -1.74
LDLR-209ENST00000558528 OR5H8P0DN80 308 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 PTHLHP12272 177 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 ANXA3P12429 323 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 ZBTB25P24278 435 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 LOXP28300 417 aaPredicted RBP4.21□□□□□ -1.74
LDLR-209ENST00000558528 HRH1P35367 487 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 HERV-K104P61576 105 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 HERV-K104P63124 156 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 COL10A1Q03692 680 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 MEF2CQ06413 473 aaPredicted RBP4.21□□□□□ -1.74
LDLR-209ENST00000558528 ZNF415Q09FC8 603 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 SCGB2B2Q4G0G5 96 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 TMEM155Q4W5P6 130 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 ZNF497Q6ZNH5 498 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 IDO2Q6ZQW0 420 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 ZNF826PQ6ZT77 177 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 IL17RELQ6ZVW7 336 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 CMTM1Q8IZ96 169 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 GAPTQ8N292 157 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 SPICQ8N5J4 248 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 GVQW1Q8N7I0 195 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 ASCC1Q8N9N2 400 aaKnown RBP4.21□□□□□ -1.74
LDLR-209ENST00000558528 CCDC71LQ8N9Z2 235 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 OR10A7Q8NGE5 316 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 OR51S1Q8NGJ8 323 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 OR4C16Q8NGL9 310 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 OR10J5Q8NHC4 309 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 ANGPTL6Q8NI99 470 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 CCL17Q92583 94 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 AKR1E2Q96JD6 320 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 ZNF488Q96MN9 340 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 TRAF4Q9BUZ4 470 aaPredicted RBP4.21□□□□□ -1.74
LDLR-209ENST00000558528 C20orf85Q9H1P6 137 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 KAAG1Q9UBP8 84 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 MIOXQ9UGB7 285 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 C14orf166Q9Y224 244 aaKnown RBP4.21□□□□□ -1.74
LDLR-209ENST00000558528 MED12Q93074 2177 aa4.21□□□□□ -1.74
LDLR-209ENST00000558528 MEIKINA0A087WXM9 373 aa4.2□□□□□ -1.74
LDLR-209ENST00000558528 TRGV10A0A0A0MS01 117 aa4.2□□□□□ -1.74
LDLR-209ENST00000558528 A0A1W2PN81 502 aa4.2□□□□□ -1.74
LDLR-209ENST00000558528 hDV102S1A0JD36 115 aa4.2□□□□□ -1.74
LDLR-209ENST00000558528 CEACAM18A8MTB9 384 aa4.2□□□□□ -1.74
LDLR-209ENST00000558528 VGLL3A8MV65 326 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms