RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 PRDX2P32119 198 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 GLRXP35754 106 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 AKR1D1P51857 326 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 RPP30P78346 268 aaKnown RBP6.07□□□□□ -1.44
VPS13C-206ENST00000558338 ZNF816Q0VGE8 651 aaPredicted RBP6.07□□□□□ -1.44
VPS13C-206ENST00000558338 IZUMO4Q1ZYL8 232 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 CR1LQ2VPA4 569 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 C1orf185Q5T7R7 199 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 CENPVQ7Z7K6 275 aaPredicted RBP6.07□□□□□ -1.44
VPS13C-206ENST00000558338 ZNF429Q86V71 674 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 C1QL4Q86Z23 238 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 ZNF808Q8N4W9 903 aaPredicted RBP6.07□□□□□ -1.44
VPS13C-206ENST00000558338 UBALD1Q8TB05 177 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 TAF15Q92804 592 aaKnown RBP eCLIP6.07□□□□□ -1.44
VPS13C-206ENST00000558338 MUCL1Q96DR8 90 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 RNF125Q96EQ8 232 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 NEIL1Q96FI4 390 aaPredicted RBP6.07□□□□□ -1.44
VPS13C-206ENST00000558338 RARRES2Q99969 163 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 RSG1Q9BU20 258 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 SFXN3Q9BWM7 321 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 MSL2Q9HCI7 577 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 UFSP2Q9NUQ7 469 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 DKK4Q9UBT3 224 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 KNTC1P50748 2209 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 UBE2L5PA0A1B0GUS4 154 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 ODAMA1E959 279 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 C17orf112F2Z3M2 114 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 ITGB1BP1O14713 200 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 RBFOX2O43251 390 aaKnown RBP eCLIP6.07□□□□□ -1.44
VPS13C-206ENST00000558338 YPEL1O60688 119 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 S1PR2O95136 353 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 CRYAAP02489 173 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 S100A8P05109 93 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 AGAP20933 346 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 G6PCP35575 357 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 TIMP3P35625 211 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 GPR12P47775 334 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 KLF3P57682 345 aaPredicted RBP6.07□□□□□ -1.44
VPS13C-206ENST00000558338 SELENOVP59797 346 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 CCL20P78556 96 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 HABP2Q14520 560 aaPredicted RBP6.07□□□□□ -1.44
VPS13C-206ENST00000558338 RTP5Q14D33 572 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 TMEM30BQ3MIR4 351 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 RBMS3Q6XE24 437 aaKnown RBP6.07□□□□□ -1.44
VPS13C-206ENST00000558338 ETV3LQ6ZN32 361 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 MRGPRGQ86SM5 289 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 HAPLN4Q86UW8 402 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 GCSAMQ8N6F7 178 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 CYB561D1Q8N8Q1 229 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 OR2Z1Q8NG97 314 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 OR10P1Q8NGE3 313 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 OR13A1Q8NGR1 328 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 DTD1Q8TEA8 209 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 YPEL2Q96QA6 119 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 OR4C12Q96R67 309 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 TCEAL7Q9BRU2 100 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 C20orf24Q9BUV8 137 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 RPRMQ9NS64 109 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 OR6C3Q9NZP0 311 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 GNG13Q9P2W3 67 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 VAX2Q9UIW0 290 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 FZR1Q9UM11 496 aa6.07□□□□□ -1.44
VPS13C-206ENST00000558338 ARID1AO14497 2285 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 IGHV3-64DA0A0J9YX35 117 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 MAP1LC3B2A6NCE7 125 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 C15orf65H3BRN8 121 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 ATXN7O15265 892 aaPredicted RBP6.06□□□□□ -1.44
VPS13C-206ENST00000558338 TGOLN2O43493 480 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 RAMP3O60896 148 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 ZNF737O75373 536 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 HPRT1P00492 218 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 KRASP01116 189 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 SSTR5P35346 364 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 AKR1C3P42330 323 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 GLIPR1P48060 266 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 RAB7AP51149 207 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 ERVK-16P61578 105 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 RPL30P62888 115 aaKnown RBP6.06□□□□□ -1.44
VPS13C-206ENST00000558338 ARL16Q0P5N6 197 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 Q3ZCU0 254 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 Q6ZS92 163 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 CD177Q8N6Q3 437 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 ZNF709Q8N972 641 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 RAB39BQ96DA2 213 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 C5orf30Q96GV9 206 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 MEGF10Q96KG7 1140 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 MAP1LC3BQ9GZQ8 125 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 PSG11Q9UQ72 335 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 RFNGQ9Y644 331 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 PTPRBP23467 1997 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 GPR179Q6PRD1 2367 aa6.06□□□□□ -1.44
VPS13C-206ENST00000558338 CHD3Q12873 2000 aaKnown RBP6.05□□□□□ -1.44
VPS13C-206ENST00000558338 CTXND1A0A1B0GTU2 59 aa6.05□□□□□ -1.44
VPS13C-206ENST00000558338 A0A1W2PPE2 198 aa6.05□□□□□ -1.44
VPS13C-206ENST00000558338 MARCH11A6NNE9 402 aa6.05□□□□□ -1.44
VPS13C-206ENST00000558338 CEBPZOSA8MTT3 80 aa6.05□□□□□ -1.44
VPS13C-206ENST00000558338 C17orf98A8MV24 154 aa6.05□□□□□ -1.44
VPS13C-206ENST00000558338 M0R1B8 84 aa6.05□□□□□ -1.44
VPS13C-206ENST00000558338 F2RL2O00254 374 aa6.05□□□□□ -1.44
VPS13C-206ENST00000558338 RBMXL2O75526 392 aaKnown RBP6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms