RNA–Protein interactions for RNA: ENST00000558319.5

SPG11-210, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SPG11, Length 6,426 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-210ENST00000558319 ATG4DQ86TL0 474 aaPredicted RBP12.06□□□□□ -0.48
SPG11-210ENST00000558319 SMCHD1A6NHR9 2005 aa12.06□□□□□ -0.48
SPG11-210ENST00000558319 HLA-DQA1P01909 254 aa12.06□□□□□ -0.48
SPG11-210ENST00000558319 MT-ND6P03923 174 aa12.06□□□□□ -0.48
SPG11-210ENST00000558319 SCTP09683 121 aa12.06□□□□□ -0.48
SPG11-210ENST00000558319 NIT1Q86X76 327 aa12.06□□□□□ -0.48
SPG11-210ENST00000558319 ALKBH7Q9BT30 221 aaPredicted RBP12.06□□□□□ -0.48
SPG11-210ENST00000558319 MUC21A0A0G2JKD1 596 aa12.06□□□□□ -0.48
SPG11-210ENST00000558319 MUC21A0A140T8X8 626 aa12.06□□□□□ -0.48
SPG11-210ENST00000558319 C1QTNF9BB2RNN3 333 aa12.06□□□□□ -0.48
SPG11-210ENST00000558319 CRYBB3P26998 211 aa12.06□□□□□ -0.48
SPG11-210ENST00000558319 MUC21Q5SSG8 566 aa12.06□□□□□ -0.48
SPG11-210ENST00000558319 PPP1R3EQ9H7J1 279 aa12.06□□□□□ -0.48
SPG11-210ENST00000558319 SERF2P84101 59 aa12.06□□□□□ -0.48
SPG11-210ENST00000558319 DNAJC4Q9NNZ3 241 aa12.06□□□□□ -0.48
SPG11-210ENST00000558319 ZNF831Q5JPB2 1677 aa12.05□□□□□ -0.48
SPG11-210ENST00000558319 LOC105371267A0A1B0GV96 52 aa12.05□□□□□ -0.48
SPG11-210ENST00000558319 PTP4A3O75365 173 aa12.05□□□□□ -0.48
SPG11-210ENST00000558319 LINC00869P0C866 280 aa12.05□□□□□ -0.48
SPG11-210ENST00000558319 C1orf185Q5T7R7 199 aa12.05□□□□□ -0.48
SPG11-210ENST00000558319 METTL26Q96S19 204 aa12.05□□□□□ -0.48
SPG11-210ENST00000558319 TIMP4Q99727 224 aa12.05□□□□□ -0.48
SPG11-210ENST00000558319 ZNF107Q9UII5 783 aaPredicted RBP12.05□□□□□ -0.48
SPG11-210ENST00000558319 DICER1Q9UPY3 1922 aaKnown RBP12.05□□□□□ -0.48
SPG11-210ENST00000558319 DPRXA6NFQ7 191 aa12.05□□□□□ -0.48
SPG11-210ENST00000558319 CTSBP07858 339 aa12.05□□□□□ -0.48
SPG11-210ENST00000558319 OR10AG1Q8NH19 301 aa12.05□□□□□ -0.48
SPG11-210ENST00000558319 TUBD1Q9UJT1 453 aa12.05□□□□□ -0.48
SPG11-210ENST00000558319 PPIAL4EA0A075B759 164 aa12.05□□□□□ -0.48
SPG11-210ENST00000558319 LINC00587B1AMM8 73 aa12.05□□□□□ -0.48
SPG11-210ENST00000558319 PPIAL4DF5H284 164 aa12.05□□□□□ -0.48
SPG11-210ENST00000558319 FTH1P19P0C7X4 201 aa12.05□□□□□ -0.48
SPG11-210ENST00000558319 PPIAL4FP0DN26 164 aa12.05□□□□□ -0.48
SPG11-210ENST00000558319 JOSD1Q15040 202 aaPredicted RBP12.05□□□□□ -0.48
SPG11-210ENST00000558319 KCNS1Q96KK3 526 aa12.05□□□□□ -0.48
SPG11-210ENST00000558319 PPIAL4AQ9Y536 164 aa12.05□□□□□ -0.48
SPG11-210ENST00000558319 TMEM78Q5T7P6 136 aa12.05□□□□□ -0.48
SPG11-210ENST00000558319 QTRT1Q9BXR0 403 aaKnown RBP12.05□□□□□ -0.48
SPG11-210ENST00000558319 SCN1AP35498 2009 aa12.04□□□□□ -0.48
SPG11-210ENST00000558319 SFTA2Q6UW10 78 aa12.04□□□□□ -0.48
SPG11-210ENST00000558319 ITLN1Q8WWA0 313 aa12.04□□□□□ -0.48
SPG11-210ENST00000558319 DCTN5Q9BTE1 182 aa12.04□□□□□ -0.48
SPG11-210ENST00000558319 LINC01387J3KSC0 135 aa12.04□□□□□ -0.48
SPG11-210ENST00000558319 GLIPR1P48060 266 aa12.04□□□□□ -0.48
SPG11-210ENST00000558319 IMMP2LQ96T52 175 aa12.04□□□□□ -0.48
SPG11-210ENST00000558319 CISD1Q9NZ45 108 aaKnown RBP12.04□□□□□ -0.48
SPG11-210ENST00000558319 CLDN16Q9Y5I7 305 aa12.04□□□□□ -0.48
SPG11-210ENST00000558319 ZNFX1Q9P2E3 1918 aaKnown RBP12.04□□□□□ -0.48
SPG11-210ENST00000558319 TDRD6O60522 2096 aaKnown RBP12.04□□□□□ -0.48
SPG11-210ENST00000558319 PRDX2P32119 198 aa12.04□□□□□ -0.48
SPG11-210ENST00000558319 LILRA6Q6PI73 481 aa12.04□□□□□ -0.48
SPG11-210ENST00000558319 SFRP2Q96HF1 295 aa12.04□□□□□ -0.48
SPG11-210ENST00000558319 SMDT1Q9H4I9 107 aa12.04□□□□□ -0.48
SPG11-210ENST00000558319 MOB4Q9Y3A3 225 aa12.04□□□□□ -0.48
SPG11-210ENST00000558319 A0A0U1RQV5 110 aa12.04□□□□□ -0.48
SPG11-210ENST00000558319 IGKV1D-16P01601 117 aa12.04□□□□□ -0.48
SPG11-210ENST00000558319 ZFP36L2P47974 494 aaKnown RBP12.04□□□□□ -0.48
SPG11-210ENST00000558319 H2BFSP57053 126 aa12.04□□□□□ -0.48
SPG11-210ENST00000558319 MRAP2Q96G30 205 aa12.04□□□□□ -0.48
SPG11-210ENST00000558319 DUX5Q96PT3 197 aa12.04□□□□□ -0.48
SPG11-210ENST00000558319 PSMB11A5LHX3 300 aa12.04□□□□□ -0.48
SPG11-210ENST00000558319 C17orf51A8MQB3 221 aa12.04□□□□□ -0.48
SPG11-210ENST00000558319 HLA-DQB1P01920 261 aa12.04□□□□□ -0.48
SPG11-210ENST00000558319 GZMHP20718 246 aa12.04□□□□□ -0.48
SPG11-210ENST00000558319 P2RY4P51582 365 aa12.04□□□□□ -0.48
SPG11-210ENST00000558319 TAF15Q92804 592 aaKnown RBP eCLIP12.04□□□□□ -0.48
SPG11-210ENST00000558319 MEGF9Q9H1U4 602 aa12.04□□□□□ -0.48
SPG11-210ENST00000558319 LIFP15018 202 aa12.03□□□□□ -0.48
SPG11-210ENST00000558319 ANOS1P23352 680 aa12.03□□□□□ -0.48
SPG11-210ENST00000558319 FOXA3P55318 350 aaPredicted RBP12.03□□□□□ -0.48
SPG11-210ENST00000558319 TMEM45BQ96B21 275 aa12.03□□□□□ -0.48
SPG11-210ENST00000558319 CCL19Q99731 98 aa12.03□□□□□ -0.48
SPG11-210ENST00000558319 ADAMTSL1Q8N6G6 1762 aa12.03□□□□□ -0.48
SPG11-210ENST00000558319 NPIPB8E9PQR5 432 aa12.03□□□□□ -0.48
SPG11-210ENST00000558319 NPIPB9F8W1W9 429 aa12.03□□□□□ -0.48
SPG11-210ENST00000558319 KLF4O43474 513 aa12.03□□□□□ -0.48
SPG11-210ENST00000558319 NPIPB7O75200 414 aa12.03□□□□□ -0.48
SPG11-210ENST00000558319 DNAL4O96015 105 aa12.03□□□□□ -0.48
SPG11-210ENST00000558319 ID1P41134 155 aa12.03□□□□□ -0.48
SPG11-210ENST00000558319 KNL1Q8NG31 2342 aa12.03□□□□□ -0.48
SPG11-210ENST00000558319 ERGP11308 486 aa12.03□□□□□ -0.48
SPG11-210ENST00000558319 HEXA-AS1Q9H8Q6 139 aa12.03□□□□□ -0.48
SPG11-210ENST00000558319 TMEM183AQ8IXX5 376 aa12.03□□□□□ -0.48
SPG11-210ENST00000558319 BEND2Q8NDZ0 799 aa12.03□□□□□ -0.48
SPG11-210ENST00000558319 OR10J6PQ8NGY7 276 aa12.03□□□□□ -0.48
SPG11-210ENST00000558319 CITED2Q99967 270 aaPredicted RBP12.03□□□□□ -0.48
SPG11-210ENST00000558319 PHLDA3Q9Y5J5 127 aa12.03□□□□□ -0.48
SPG11-210ENST00000558319 GAPDHP04406 335 aaKnown RBP12.03□□□□□ -0.48
SPG11-210ENST00000558319 ISG15P05161 165 aa12.03□□□□□ -0.48
SPG11-210ENST00000558319 C11orf44Q8N8P7 122 aa12.03□□□□□ -0.48
SPG11-210ENST00000558319 TRIP12Q14669 1992 aaPredicted RBP12.03□□□□□ -0.48
SPG11-210ENST00000558319 DNAJC13O75165 2243 aa12.02□□□□□ -0.48
SPG11-210ENST00000558319 CX3CL1P78423 397 aa12.02□□□□□ -0.48
SPG11-210ENST00000558319 SLC22A18ASQ8N1D0 253 aa12.02□□□□□ -0.48
SPG11-210ENST00000558319 LSM6P62312 80 aaKnown RBP12.02□□□□□ -0.48
SPG11-210ENST00000558319 CACNG7P62955 275 aa12.02□□□□□ -0.48
SPG11-210ENST00000558319 NHLRC3Q5JS37 347 aa12.02□□□□□ -0.48
SPG11-210ENST00000558319 CDCP2Q5VXM1 449 aa12.02□□□□□ -0.48
SPG11-210ENST00000558319 CHRNA10Q9GZZ6 450 aa12.02□□□□□ -0.48
SPG11-210ENST00000558319 FNDC4Q9H6D8 234 aaPredicted RBP12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms