RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 KRTAP1-4P0C5Y4 121 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 OR4A8P0C604 315 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 CYBAP13498 195 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 GABRA1P14867 456 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 SPNP16150 400 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 MDKP21741 143 aaPredicted RBP2.03□□□□□ -2.08
TRAV28-201ENST00000557548 ERP29P30040 261 aaKnown RBP2.03□□□□□ -2.08
TRAV28-201ENST00000557548 DDTP30046 118 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 SDC4P31431 198 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 GZMMP51124 257 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 CCL23P55773 120 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 CMC4P56277 68 aaPredicted RBP2.03□□□□□ -2.08
TRAV28-201ENST00000557548 H2BFSP57053 126 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 GTF2BQ00403 316 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 IHHQ14623 411 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 EBPQ15125 230 aaKnown RBP2.03□□□□□ -2.08
TRAV28-201ENST00000557548 SURF2Q15527 256 aaPredicted RBP2.03□□□□□ -2.08
TRAV28-201ENST00000557548 UBE2SQ16763 222 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 Q499Y3 187 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 TMEM128Q5BJH2 165 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 ELP2Q6IA86 826 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 DCUN1D2Q6PH85 259 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 SCGB1D4Q6XE38 83 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 DGAT2L6Q6ZPD8 337 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 Q6ZR03 302 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 LINC01551Q86U37 167 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 CALHM3Q86XJ0 350 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 ANGPTL5Q86XS5 388 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 ZBTB8OSQ8IWT0 167 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 MUC15Q8N387 334 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 SLC25A29Q8N8R3 303 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 OR10G2Q8NGC3 310 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 OR8J3Q8NGG0 315 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 OR51A2Q8NGJ7 313 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 OR2K2Q8NGT1 345 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 OR10D3Q8NH80 312 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 JOSD2Q8TAC2 188 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 LHFPL5Q8TAF8 219 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 ZNF420Q8TAQ5 688 aaPredicted RBP2.03□□□□□ -2.08
TRAV28-201ENST00000557548 CD200R1Q8TD46 325 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 DNAJC9Q8WXX5 260 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 PYURFQ96I23 114 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 SLC35G5Q96KT7 338 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 TBX5Q99593 518 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 NDFIP1Q9BT67 221 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 EBPLQ9BY08 206 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 MS4A8Q9BY19 250 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 ULBP3Q9BZM4 244 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 CHST5Q9GZS9 411 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 SLC25A31Q9H0C2 315 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 ABCG5Q9H222 651 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 OR51E2Q9H255 320 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 TPT1P8Q9HAU6 139 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 CA10Q9NS85 328 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 CISHQ9NSE2 258 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 SPANXCQ9NY87 97 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 RBM12B-AS1Q9P1G2 102 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 GLS2Q9UI32 602 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 KLF13Q9Y2Y9 288 aaPredicted RBP2.03□□□□□ -2.08
TRAV28-201ENST00000557548 INSIG2Q9Y5U4 225 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 ARHGAP21Q5T5U3 1957 aa2.03□□□□□ -2.08
TRAV28-201ENST00000557548 ZNF646O15015 1829 aaPredicted RBP2.03□□□□□ -2.09
TRAV28-201ENST00000557548 TUBGCP6Q96RT7 1819 aa2.03□□□□□ -2.09
TRAV28-201ENST00000557548 LRP6O75581 1613 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 KDM5DQ9BY66 1539 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 A2ML1A8K2U0 1454 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 MED14O60244 1454 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 COL2A1P02458 1487 aaPredicted RBP2.02□□□□□ -2.09
TRAV28-201ENST00000557548 CAMSAP2Q08AD1 1489 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 FYCO1Q9BQS8 1478 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 TNS2Q63HR2 1409 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 UHRF1BP1Q6BDS2 1440 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 CASKIN1Q8WXD9 1431 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 SETD5Q9C0A6 1442 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 CLUHO75153 1309 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 IGLV4-69A0A075B6H9 119 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 IGHV3-49A0A0A0MS15 119 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 TMEM72A0PK05 275 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 MAP1LC3B2A6NCE7 125 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 GMNCA6NCL1 334 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 E7EQ34 232 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 K7EQS6 105 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 FAAHO00519 579 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 RBFOX2O43251 390 aaKnown RBP eCLIP2.02□□□□□ -2.09
TRAV28-201ENST00000557548 ZNF207O43670 478 aaKnown RBP2.02□□□□□ -2.09
TRAV28-201ENST00000557548 ORC5O43913 435 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 ARL6IP5O75915 188 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 OR2A4O95047 310 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 PDYNP01213 254 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 HLA-DQB1P01920 261 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 TTRP02766 147 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 ADRA2AP08913 450 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 OR4Q2P0C623 313 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 CXCL3P19876 107 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 S100PP25815 95 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 CA5AP35218 305 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 AKR1C3P42330 323 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 CXCL12P48061 93 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 REG1BP48304 166 aa2.02□□□□□ -2.09
TRAV28-201ENST00000557548 MARCKSL1P49006 195 aa2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms