RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 TTTY12Q9BZ98 90 aa13.65□□□□□ -0.22
SHMT2-231ENST00000557433 WASF3Q9UPY6 502 aa13.65□□□□□ -0.22
SHMT2-231ENST00000557433 PXMP4Q9Y6I8 212 aa13.65□□□□□ -0.22
SHMT2-231ENST00000557433 HMGB3O15347 200 aaKnown RBP13.64□□□□□ -0.23
SHMT2-231ENST00000557433 ZG16O60844 167 aa13.64□□□□□ -0.23
SHMT2-231ENST00000557433 S1PR2O95136 353 aa13.64□□□□□ -0.23
SHMT2-231ENST00000557433 IL18BPO95998 194 aa13.64□□□□□ -0.23
SHMT2-231ENST00000557433 NUTF2P61970 127 aaKnown RBP13.64□□□□□ -0.23
SHMT2-231ENST00000557433 PLGLB1Q02325 96 aa13.64□□□□□ -0.23
SHMT2-231ENST00000557433 OR1C1Q15619 314 aa13.64□□□□□ -0.23
SHMT2-231ENST00000557433 FBXW9Q5XUX1 488 aa13.64□□□□□ -0.23
SHMT2-231ENST00000557433 MDP1Q86V88 176 aa13.64□□□□□ -0.23
SHMT2-231ENST00000557433 TRAPPC1Q9Y5R8 145 aa13.64□□□□□ -0.23
SHMT2-231ENST00000557433 CEP290O15078 2479 aa13.64□□□□□ -0.23
SHMT2-231ENST00000557433 SDK1Q7Z5N4 2213 aa13.64□□□□□ -0.23
SHMT2-231ENST00000557433 IQCF6A8MYZ5 107 aa13.64□□□□□ -0.23
SHMT2-231ENST00000557433 C1QTNF9BB2RNN3 333 aa13.64□□□□□ -0.23
SHMT2-231ENST00000557433 C12orf77C9JDV5 145 aa13.64□□□□□ -0.23
SHMT2-231ENST00000557433 CELA3AP09093 270 aa13.64□□□□□ -0.23
SHMT2-231ENST00000557433 OR3A1P47881 315 aa13.64□□□□□ -0.23
SHMT2-231ENST00000557433 ERVFC1-1P60608 527 aa13.64□□□□□ -0.23
SHMT2-231ENST00000557433 RPL30P62888 115 aaKnown RBP13.64□□□□□ -0.23
SHMT2-231ENST00000557433 ZNF816Q0VGE8 651 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-231ENST00000557433 ZNF766Q5HY98 468 aa13.64□□□□□ -0.23
SHMT2-231ENST00000557433 C1orf194Q5T5A4 169 aa13.64□□□□□ -0.23
SHMT2-231ENST00000557433 FAM78BQ5VT40 261 aa13.64□□□□□ -0.23
SHMT2-231ENST00000557433 TRAT1Q6PIZ9 186 aa13.64□□□□□ -0.23
SHMT2-231ENST00000557433 PRR7Q8TB68 274 aa13.64□□□□□ -0.23
SHMT2-231ENST00000557433 GATAD1Q8WUU5 269 aa13.64□□□□□ -0.23
SHMT2-231ENST00000557433 FKBP11Q9NYL4 201 aa13.64□□□□□ -0.23
SHMT2-231ENST00000557433 CHD3Q12873 2000 aaKnown RBP13.64□□□□□ -0.23
SHMT2-231ENST00000557433 ZNHIT1O43257 154 aa13.63□□□□□ -0.23
SHMT2-231ENST00000557433 SELLP14151 372 aa13.63□□□□□ -0.23
SHMT2-231ENST00000557433 OR10J1P30954 320 aa13.63□□□□□ -0.23
SHMT2-231ENST00000557433 MAGEA5P43359 124 aa13.63□□□□□ -0.23
SHMT2-231ENST00000557433 PMP22Q01453 160 aa13.63□□□□□ -0.23
SHMT2-231ENST00000557433 ZNF124Q15973 351 aa13.63□□□□□ -0.23
SHMT2-231ENST00000557433 TMEM251Q8N6I4 163 aa13.63□□□□□ -0.23
SHMT2-231ENST00000557433 OR1L1Q8NH94 360 aa13.63□□□□□ -0.23
SHMT2-231ENST00000557433 NEU1Q99519 415 aa13.63□□□□□ -0.23
SHMT2-231ENST00000557433 TMEM204Q9BSN7 226 aa13.63□□□□□ -0.23
SHMT2-231ENST00000557433 SZT2Q5T011 3432 aa13.63□□□□□ -0.23
SHMT2-231ENST00000557433 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-231ENST00000557433 A0A0U1RQK1 487 aa13.62□□□□□ -0.23
SHMT2-231ENST00000557433 A0A1W2PPV4 95 aa13.62□□□□□ -0.23
SHMT2-231ENST00000557433 ZNF320A2RRD8 509 aa13.62□□□□□ -0.23
SHMT2-231ENST00000557433 CDIPTO14735 213 aa13.62□□□□□ -0.23
SHMT2-231ENST00000557433 TCAPO15273 167 aa13.62□□□□□ -0.23
SHMT2-231ENST00000557433 SMPD2O60906 423 aa13.62□□□□□ -0.23
SHMT2-231ENST00000557433 HBZP02008 142 aa13.62□□□□□ -0.23
SHMT2-231ENST00000557433 NPPCP23582 126 aa13.62□□□□□ -0.23
SHMT2-231ENST00000557433 CD1BP29016 333 aa13.62□□□□□ -0.23
SHMT2-231ENST00000557433 OPRK1P41145 380 aa13.62□□□□□ -0.23
SHMT2-231ENST00000557433 UBE2NP61088 152 aaKnown RBP13.62□□□□□ -0.23
SHMT2-231ENST00000557433 YPEL3P61236 119 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-231ENST00000557433 GNB1P62873 340 aa13.62□□□□□ -0.23
SHMT2-231ENST00000557433 BTNL3Q6UXE8 466 aa13.62□□□□□ -0.23
SHMT2-231ENST00000557433 LOXL2Q9Y4K0 774 aa13.62□□□□□ -0.23
SHMT2-231ENST00000557433 SPTBN5Q9NRC6 3674 aaKnown RBP13.62□□□□□ -0.23
SHMT2-231ENST00000557433 KIR2DL5BA0A0G2JN68 375 aa13.62□□□□□ -0.23
SHMT2-231ENST00000557433 KIR2DL5BA0A0G2JPC4 375 aa13.62□□□□□ -0.23
SHMT2-231ENST00000557433 MDFIC2A0A1B0GVS7 189 aa13.62□□□□□ -0.23
SHMT2-231ENST00000557433 C17orf98A8MV24 154 aa13.62□□□□□ -0.23
SHMT2-231ENST00000557433 CHRNA7P36544 502 aa13.62□□□□□ -0.23
SHMT2-231ENST00000557433 SOX8P57073 446 aa13.62□□□□□ -0.23
SHMT2-231ENST00000557433 TIPARPQ7Z3E1 657 aaKnown RBP13.62□□□□□ -0.23
SHMT2-231ENST00000557433 DMRTC2Q8IXT2 367 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-231ENST00000557433 KIR2DL5AQ8N109 375 aa13.62□□□□□ -0.23
SHMT2-231ENST00000557433 C5orf30Q96GV9 206 aa13.62□□□□□ -0.23
SHMT2-231ENST00000557433 CNTRLQ7Z7A1 2325 aa13.61□□□□□ -0.23
SHMT2-231ENST00000557433 C15orf62A8K5M9 175 aa13.61□□□□□ -0.23
SHMT2-231ENST00000557433 FAM166BA8MTA8 275 aa13.61□□□□□ -0.23
SHMT2-231ENST00000557433 RBMXL2O75526 392 aaKnown RBP13.61□□□□□ -0.23
SHMT2-231ENST00000557433 TNFSF15O95150 251 aa13.61□□□□□ -0.23
SHMT2-231ENST00000557433 ACP1P24666 158 aa13.61□□□□□ -0.23
SHMT2-231ENST00000557433 TGIF2LXQ8IUE1 241 aa13.61□□□□□ -0.23
SHMT2-231ENST00000557433 Q8N7P7 452 aa13.61□□□□□ -0.23
SHMT2-231ENST00000557433 OR52E5Q8NH55 327 aa13.61□□□□□ -0.23
SHMT2-231ENST00000557433 UBALD1Q8TB05 177 aa13.61□□□□□ -0.23
SHMT2-231ENST00000557433 SFRP2Q96HF1 295 aa13.61□□□□□ -0.23
SHMT2-231ENST00000557433 OR51B6Q9H340 312 aa13.61□□□□□ -0.23
SHMT2-231ENST00000557433 TMEM265A0A087WTH1 108 aa13.6□□□□□ -0.23
SHMT2-231ENST00000557433 IFNL4K9M1U5 179 aa13.6□□□□□ -0.23
SHMT2-231ENST00000557433 M0QZK8 103 aa13.6□□□□□ -0.23
SHMT2-231ENST00000557433 M0R143 59 aa13.6□□□□□ -0.23
SHMT2-231ENST00000557433 TMPRSS3P57727 454 aa13.6□□□□□ -0.23
SHMT2-231ENST00000557433 BRWD1-AS2P59051 145 aa13.6□□□□□ -0.23
SHMT2-231ENST00000557433 PAFAH1B2P68402 229 aa13.6□□□□□ -0.23
SHMT2-231ENST00000557433 SPATA46Q5T0L3 261 aa13.6□□□□□ -0.23
SHMT2-231ENST00000557433 ZNF808Q8N4W9 903 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-231ENST00000557433 OR52L2PQ8NGH6 319 aa13.6□□□□□ -0.23
SHMT2-231ENST00000557433 ZDHHC16Q969W1 377 aa13.6□□□□□ -0.23
SHMT2-231ENST00000557433 ELOVL5Q9NYP7 299 aa13.6□□□□□ -0.23
SHMT2-231ENST00000557433 NAGKQ9UJ70 344 aa13.6□□□□□ -0.23
SHMT2-231ENST00000557433 KLF13Q9Y2Y9 288 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-231ENST00000557433 PSPNO60542 156 aa13.6□□□□□ -0.23
SHMT2-231ENST00000557433 CXorf1O96002 111 aa13.6□□□□□ -0.23
SHMT2-231ENST00000557433 ADH4P08319 380 aa13.6□□□□□ -0.23
SHMT2-231ENST00000557433 SELENOTP62341 195 aa13.6□□□□□ -0.23
SHMT2-231ENST00000557433 CLEC12BQ2HXU8 276 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms