RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 VAX2Q9UIW0 290 aa10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 BOD1L1Q8NFC6 3051 aa10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 MDFIC2A0A1B0GVS7 189 aa10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 C21orf140B9A014 251 aa10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 C11orf94C9JXX5 98 aa10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 SMPD2O60906 423 aa10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 RPL30P62888 115 aaKnown RBP10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 PRB3Q04118 309 aaPredicted RBP10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 FOXF2Q12947 444 aa10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 KHDC3LQ587J8 217 aa10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 NMSQ5H8A3 153 aa10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 ZNF324BQ6AW86 544 aaPredicted RBP10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 H1FOOQ8IZA3 346 aaPredicted RBP10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 RAB24Q969Q5 203 aa10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 CREBBPQ92793 2442 aa10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 XKRY2A2RUG3 117 aa10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 ACP1P24666 158 aa10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 POM121Q96HA1 1249 aa10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 ACY3Q96HD9 319 aa10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 GUCD1Q96NT3 240 aa10.25□□□□□ -0.77
CCDC88C-211ENST00000556726 IGF2RP11717 2491 aa10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 TSTD3H0UI37 97 aa10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 SP9P0CG40 484 aa10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 CLDND2Q8NHS1 167 aa10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 RNF138Q8WVD3 245 aa10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 BCL2L2Q92843 193 aaPredicted RBP10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 TOX4O94842 621 aa10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 CLDN14O95500 239 aa10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 SMIM6P0DI80 62 aa10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 PRB4P10163 310 aaPredicted RBP10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 TCL1AP56279 114 aa10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 CCL8P80075 99 aa10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 MOB1BQ7L9L4 216 aa10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 PLSCR2Q9NRY7 297 aa10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 COA4Q9NYJ1 87 aa10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 PIGBOS1A0A0B4J2F0 54 aa10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 CXorf65A6NEN9 183 aa10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 NDUFB4O95168 129 aa10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 PTBP3O95758 552 aaKnown RBP10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 PRDX2P32119 198 aa10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 MEF2BQ02080 365 aaPredicted RBP10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 MIC13Q5XKP0 118 aa10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 SPSB3Q6PJ21 355 aa10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 PCSK4Q6UW60 755 aa10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 ZNF525Q8N782 197 aa10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 LRTM2Q8N967 370 aa10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 GTF3AQ92664 365 aaKnown RBP10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 TMEM147Q9BVK8 224 aa10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 GGACTQ9BVM4 153 aa10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 ELOVL1Q9BW60 279 aa10.24□□□□□ -0.77
CCDC88C-211ENST00000556726 OOEPA6NGQ2 149 aa10.23□□□□□ -0.77
CCDC88C-211ENST00000556726 C10orf142B7Z368 130 aa10.23□□□□□ -0.77
CCDC88C-211ENST00000556726 CYC1P08574 325 aa10.23□□□□□ -0.77
CCDC88C-211ENST00000556726 RAB31Q13636 194 aa10.23□□□□□ -0.77
CCDC88C-211ENST00000556726 PMS2P11Q13670 270 aa10.23□□□□□ -0.77
CCDC88C-211ENST00000556726 ACOT6Q3I5F7 207 aaPredicted RBP10.23□□□□□ -0.77
CCDC88C-211ENST00000556726 TMEM45BQ96B21 275 aa10.23□□□□□ -0.77
CCDC88C-211ENST00000556726 FAM103A1Q9BTL3 118 aaKnown RBP10.23□□□□□ -0.77
CCDC88C-211ENST00000556726 QTRT1Q9BXR0 403 aaKnown RBP10.23□□□□□ -0.77
CCDC88C-211ENST00000556726 CXXC4Q9H2H0 198 aa10.23□□□□□ -0.77
CCDC88C-211ENST00000556726 ZNF71Q9NQZ8 489 aaPredicted RBP10.23□□□□□ -0.77
CCDC88C-211ENST00000556726 MARCH11A6NNE9 402 aa10.23□□□□□ -0.77
CCDC88C-211ENST00000556726 MRGPRGQ86SM5 289 aa10.23□□□□□ -0.77
CCDC88C-211ENST00000556726 MEGF10Q96KG7 1140 aa10.23□□□□□ -0.77
CCDC88C-211ENST00000556726 PACRGQ96M98 296 aaPredicted RBP10.23□□□□□ -0.77
CCDC88C-211ENST00000556726 SAMD10Q9BYL1 202 aa10.23□□□□□ -0.77
CCDC88C-211ENST00000556726 SH2D2AQ9NP31 389 aa10.23□□□□□ -0.77
CCDC88C-211ENST00000556726 C1QTNF9BB2RNN3 333 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 CECR9P0C854 216 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 HTD2P86397 168 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 KCNIP4Q6PIL6 250 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 MGAQ8IWI9 3026 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 GMPPAQ96IJ6 420 aaPredicted RBP10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 OR2V2Q96R30 315 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 LINC00470Q9BZP3 86 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 WDR61Q9GZS3 305 aaKnown RBP10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 LOC102723971A0A1B0GUV8 181 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 FAM90A10PA6NDY2 464 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 FAM90A18PA6NE21 464 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 FAM90A16PA6NEW6 464 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 FAM90A20PA6NIJ5 464 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 FAM90A8PA6NJQ4 464 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 FAM90A7PA6NKC0 464 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 FAM90A22PA8MWA6 464 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 FAM90A12PA8MX19 464 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 FAM90A5PA8MXJ8 464 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 FAM90A23PA8MXZ1 464 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 TMPRSS2O15393 492 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 FAM90A15PP0C7V4 464 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 FAM90A13PP0C7W8 464 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 FAM90A14PP0C7W9 464 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 FAM90A24PP0C7X0 464 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 ZNF90Q03938 601 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 PRR27Q6MZM9 219 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 ACSM6Q6P461 480 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 CEP192Q8TEP8 1941 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 TRAV17A0A0B4J275 112 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 KLK10O43240 276 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 PAX9P55771 341 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 ZADH2Q8N4Q0 377 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms