RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 M0R1X1 148 aa12.51□□□□□ -0.41
CCDC88C-209ENST00000554872 TNFAIP8O95379 198 aa12.51□□□□□ -0.41
CCDC88C-209ENST00000554872 OR8U9P0C7N5 309 aa12.51□□□□□ -0.41
CCDC88C-209ENST00000554872 RRASP10301 218 aa12.51□□□□□ -0.41
CCDC88C-209ENST00000554872 SNRPBP14678 240 aaKnown RBP12.51□□□□□ -0.41
CCDC88C-209ENST00000554872 LGALS7P47929 136 aa12.51□□□□□ -0.41
CCDC88C-209ENST00000554872 AKIRIN2Q53H80 203 aa12.51□□□□□ -0.41
CCDC88C-209ENST00000554872 PYHIN1Q6K0P9 492 aa12.51□□□□□ -0.41
CCDC88C-209ENST00000554872 CROCCP3Q8IVE0 287 aa12.51□□□□□ -0.41
CCDC88C-209ENST00000554872 DRAXINQ8NBI3 349 aaPredicted RBP12.51□□□□□ -0.41
CCDC88C-209ENST00000554872 FLYWCH2Q96CP2 140 aaKnown RBP12.51□□□□□ -0.41
CCDC88C-209ENST00000554872 SLC25A38Q96DW6 304 aa12.51□□□□□ -0.41
CCDC88C-209ENST00000554872 C5orf30Q96GV9 206 aa12.51□□□□□ -0.41
CCDC88C-209ENST00000554872 ADTRPQ96IZ2 230 aa12.51□□□□□ -0.41
CCDC88C-209ENST00000554872 GINS4Q9BRT9 223 aa12.51□□□□□ -0.41
CCDC88C-209ENST00000554872 FOXA2Q9Y261 457 aaPredicted RBP12.51□□□□□ -0.41
CCDC88C-209ENST00000554872 NUBP2Q9Y5Y2 271 aa12.51□□□□□ -0.41
CCDC88C-209ENST00000554872 IGKV1D-8A0A087WSZ0 117 aa12.5□□□□□ -0.41
CCDC88C-209ENST00000554872 A0A087WXM4 84 aa12.5□□□□□ -0.41
CCDC88C-209ENST00000554872 LOC100506127A0A0U1RQW1 187 aa12.5□□□□□ -0.41
CCDC88C-209ENST00000554872 TRIM64CA6NLI5 447 aa12.5□□□□□ -0.41
CCDC88C-209ENST00000554872 G3V318 75 aa12.5□□□□□ -0.41
CCDC88C-209ENST00000554872 EGR2P11161 476 aaPredicted RBP12.5□□□□□ -0.41
CCDC88C-209ENST00000554872 TMEM267Q0VDI3 215 aaPredicted RBP12.5□□□□□ -0.41
CCDC88C-209ENST00000554872 PLGLAQ15195 96 aa12.5□□□□□ -0.41
CCDC88C-209ENST00000554872 TMEM177Q53S58 311 aa12.5□□□□□ -0.41
CCDC88C-209ENST00000554872 TMEM65Q6PI78 240 aa12.5□□□□□ -0.41
CCDC88C-209ENST00000554872 LCNL1Q6ZST4 164 aa12.5□□□□□ -0.41
CCDC88C-209ENST00000554872 ZNF491Q8N8L2 437 aa12.5□□□□□ -0.41
CCDC88C-209ENST00000554872 MAFIPQ8WZ33 124 aa12.5□□□□□ -0.41
CCDC88C-209ENST00000554872 DDB2Q92466 427 aa12.5□□□□□ -0.41
CCDC88C-209ENST00000554872 DPF1Q92782 380 aa12.5□□□□□ -0.41
CCDC88C-209ENST00000554872 VCX3AQ9NNX9 186 aa12.5□□□□□ -0.41
CCDC88C-209ENST00000554872 SLC35D1Q9NTN3 355 aa12.5□□□□□ -0.41
CCDC88C-209ENST00000554872 METTL1Q9UBP6 276 aaKnown RBP12.5□□□□□ -0.41
CCDC88C-209ENST00000554872 ZMAT5Q9UDW3 170 aaKnown RBP12.5□□□□□ -0.41
CCDC88C-209ENST00000554872 ELF5Q9UKW6 265 aaPredicted RBP12.5□□□□□ -0.41
CCDC88C-209ENST00000554872 VSIG4Q9Y279 399 aa12.5□□□□□ -0.41
CCDC88C-209ENST00000554872 FBXO7Q9Y3I1 522 aa12.5□□□□□ -0.41
CCDC88C-209ENST00000554872 WSB1Q9Y6I7 421 aa12.5□□□□□ -0.41
CCDC88C-209ENST00000554872 TMEM235A6NFC5 223 aa12.49□□□□□ -0.41
CCDC88C-209ENST00000554872 I3L521 148 aa12.49□□□□□ -0.41
CCDC88C-209ENST00000554872 FCN1O00602 326 aa12.49□□□□□ -0.41
CCDC88C-209ENST00000554872 SLC22A5O76082 557 aa12.49□□□□□ -0.41
CCDC88C-209ENST00000554872 IGLV2-23P01705 113 aa12.49□□□□□ -0.41
CCDC88C-209ENST00000554872 CRYGBP07316 175 aa12.49□□□□□ -0.41
CCDC88C-209ENST00000554872 RAB9AP51151 201 aa12.49□□□□□ -0.41
CCDC88C-209ENST00000554872 LUMP51884 338 aaPredicted RBP12.49□□□□□ -0.41
CCDC88C-209ENST00000554872 CNIH2Q6PI25 160 aa12.49□□□□□ -0.41
CCDC88C-209ENST00000554872 OR5M8Q8NGP6 311 aa12.49□□□□□ -0.41
CCDC88C-209ENST00000554872 KLK15Q9H2R5 256 aa12.49□□□□□ -0.41
CCDC88C-209ENST00000554872 RNF167Q9H6Y7 350 aa12.49□□□□□ -0.41
CCDC88C-209ENST00000554872 SPATA2Q9UM82 520 aa12.49□□□□□ -0.41
CCDC88C-209ENST00000554872 SSX5O60225 188 aa12.48□□□□□ -0.41
CCDC88C-209ENST00000554872 SOX15O60248 233 aa12.48□□□□□ -0.41
CCDC88C-209ENST00000554872 HLA-DQB1P01920 261 aa12.48□□□□□ -0.41
CCDC88C-209ENST00000554872 PRB2P02812 416 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-209ENST00000554872 CLEC2LP0C7M8 214 aa12.48□□□□□ -0.41
CCDC88C-209ENST00000554872 DUTP33316 252 aaKnown RBP12.48□□□□□ -0.41
CCDC88C-209ENST00000554872 LINC00205P59089 165 aa12.48□□□□□ -0.41
CCDC88C-209ENST00000554872 GNG2P59768 71 aa12.48□□□□□ -0.41
CCDC88C-209ENST00000554872 RPS16P62249 146 aaKnown RBP12.48□□□□□ -0.41
CCDC88C-209ENST00000554872 MXD1Q05195 221 aa12.48□□□□□ -0.41
CCDC88C-209ENST00000554872 CBX3Q13185 183 aa12.48□□□□□ -0.41
CCDC88C-209ENST00000554872 RTL8BQ17RB0 113 aa12.48□□□□□ -0.41
CCDC88C-209ENST00000554872 PPP1R27Q86WC6 154 aa12.48□□□□□ -0.41
CCDC88C-209ENST00000554872 TSPAN14Q8NG11 270 aa12.48□□□□□ -0.41
CCDC88C-209ENST00000554872 MRAPQ8TCY5 172 aa12.48□□□□□ -0.41
CCDC88C-209ENST00000554872 NUDCD2Q8WVJ2 157 aa12.48□□□□□ -0.41
CCDC88C-209ENST00000554872 YIPF6Q96EC8 236 aa12.48□□□□□ -0.41
CCDC88C-209ENST00000554872 ANXA10Q9UJ72 324 aa12.48□□□□□ -0.41
CCDC88C-209ENST00000554872 OR2W1Q9Y3N9 320 aa12.48□□□□□ -0.41
CCDC88C-209ENST00000554872 H3BUA1 57 aa12.47□□□□□ -0.41
CCDC88C-209ENST00000554872 TUSC2O75896 110 aa12.47□□□□□ -0.41
CCDC88C-209ENST00000554872 BRI3O95415 125 aa12.47□□□□□ -0.41
CCDC88C-209ENST00000554872 CA2P00918 260 aa12.47□□□□□ -0.41
CCDC88C-209ENST00000554872 KRTAP10-11P60412 298 aa12.47□□□□□ -0.41
CCDC88C-209ENST00000554872 SSBP2P81877 361 aaPredicted RBP12.47□□□□□ -0.41
CCDC88C-209ENST00000554872 MSMO1Q15800 293 aa12.47□□□□□ -0.41
CCDC88C-209ENST00000554872 DEFB136Q30KP8 78 aa12.47□□□□□ -0.41
CCDC88C-209ENST00000554872 OVCH2Q7RTZ1 564 aa12.47□□□□□ -0.41
CCDC88C-209ENST00000554872 ZNF645Q8N7E2 425 aa12.47□□□□□ -0.41
CCDC88C-209ENST00000554872 OR5H6Q8NGV6 325 aa12.47□□□□□ -0.41
CCDC88C-209ENST00000554872 ARPC1AQ92747 370 aa12.47□□□□□ -0.41
CCDC88C-209ENST00000554872 TMEM68Q96MH6 324 aa12.47□□□□□ -0.41
CCDC88C-209ENST00000554872 ST6GALNAC5Q9BVH7 336 aa12.47□□□□□ -0.41
CCDC88C-209ENST00000554872 GNB4Q9HAV0 340 aa12.47□□□□□ -0.41
CCDC88C-209ENST00000554872 A0A1W2PN81 502 aa12.46□□□□□ -0.41
CCDC88C-209ENST00000554872 SLC25A17O43808 307 aa12.46□□□□□ -0.41
CCDC88C-209ENST00000554872 AIREO43918 545 aa12.46□□□□□ -0.41
CCDC88C-209ENST00000554872 OR8U8P0C7N1 319 aa12.46□□□□□ -0.41
CCDC88C-209ENST00000554872 CHRNA7P36544 502 aa12.46□□□□□ -0.41
CCDC88C-209ENST00000554872 ECSCRQ19T08 205 aa12.46□□□□□ -0.41
CCDC88C-209ENST00000554872 IDNKQ5T6J7 187 aa12.46□□□□□ -0.41
CCDC88C-209ENST00000554872 OSR1Q8TAX0 266 aaPredicted RBP12.46□□□□□ -0.41
CCDC88C-209ENST00000554872 HARBI1Q96MB7 349 aa12.46□□□□□ -0.41
CCDC88C-209ENST00000554872 DUX3Q96PT4 197 aa12.46□□□□□ -0.41
CCDC88C-209ENST00000554872 SLA2Q9H6Q3 261 aa12.46□□□□□ -0.41
CCDC88C-209ENST00000554872 TPSG1Q9NRR2 321 aa12.46□□□□□ -0.41
CCDC88C-209ENST00000554872 RBM7Q9Y580 266 aaKnown RBP12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms