RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 ZNF273Q14593 569 aa12.73□□□□□ -0.37
CUX1-214ENST00000550008 OR4P4Q8NGL7 312 aa12.73□□□□□ -0.37
CUX1-214ENST00000550008 PLPPR1Q8TBJ4 325 aa12.73□□□□□ -0.37
CUX1-214ENST00000550008 PPIAL4AQ9Y536 164 aa12.73□□□□□ -0.37
CUX1-214ENST00000550008 PQLC2LA1A4F0 135 aa12.73□□□□□ -0.37
CUX1-214ENST00000550008 WNT5AP41221 380 aa12.73□□□□□ -0.37
CUX1-214ENST00000550008 B3GALT5-AS1P59052 145 aa12.73□□□□□ -0.37
CUX1-214ENST00000550008 SAXO1Q8IYX7 474 aa12.73□□□□□ -0.37
CUX1-214ENST00000550008 CACFD1Q9UGQ2 172 aa12.73□□□□□ -0.37
CUX1-214ENST00000550008 IGF2RP11717 2491 aa12.73□□□□□ -0.37
CUX1-214ENST00000550008 PITX3O75364 302 aa12.73□□□□□ -0.37
CUX1-214ENST00000550008 NPY1RP25929 384 aa12.73□□□□□ -0.37
CUX1-214ENST00000550008 RBKSQ9H477 322 aa12.73□□□□□ -0.37
CUX1-214ENST00000550008 HEXA-AS1Q9H8Q6 139 aa12.73□□□□□ -0.37
CUX1-214ENST00000550008 NCOA6Q14686 2063 aaPredicted RBP12.72□□□□□ -0.37
CUX1-214ENST00000550008 J3QR06 171 aa12.72□□□□□ -0.37
CUX1-214ENST00000550008 SPP1P10451 314 aa12.72□□□□□ -0.37
CUX1-214ENST00000550008 THBS3P49746 956 aa12.72□□□□□ -0.37
CUX1-214ENST00000550008 MS4A5Q9H3V2 200 aa12.72□□□□□ -0.37
CUX1-214ENST00000550008 FBLN5Q9UBX5 448 aa12.72□□□□□ -0.37
CUX1-214ENST00000550008 KIAA1671Q9BY89 1806 aa12.72□□□□□ -0.37
CUX1-214ENST00000550008 C11orf94C9JXX5 98 aa12.72□□□□□ -0.37
CUX1-214ENST00000550008 PRB3Q04118 309 aaPredicted RBP12.72□□□□□ -0.37
CUX1-214ENST00000550008 HABP2Q14520 560 aaPredicted RBP12.72□□□□□ -0.37
CUX1-214ENST00000550008 RTP5Q14D33 572 aa12.72□□□□□ -0.37
CUX1-214ENST00000550008 RPL39P5Q59GN2 51 aa12.72□□□□□ -0.37
CUX1-214ENST00000550008 OR10A7Q8NGE5 316 aa12.72□□□□□ -0.37
CUX1-214ENST00000550008 FAM210BQ96KR6 192 aa12.72□□□□□ -0.37
CUX1-214ENST00000550008 CALYQ9NYX4 217 aa12.72□□□□□ -0.37
CUX1-214ENST00000550008 G3V3Q6 166 aa12.72□□□□□ -0.37
CUX1-214ENST00000550008 B2MP61769 119 aa12.72□□□□□ -0.37
CUX1-214ENST00000550008 ACSF3Q4G176 576 aaPredicted RBP12.72□□□□□ -0.37
CUX1-214ENST00000550008 RNFT1Q5M7Z0 435 aa12.72□□□□□ -0.37
CUX1-214ENST00000550008 DHRS11Q6UWP2 260 aa12.72□□□□□ -0.37
CUX1-214ENST00000550008 NUP210Q8TEM1 1887 aaPredicted RBP12.72□□□□□ -0.37
CUX1-214ENST00000550008 LDLRAD3Q86YD5 345 aa12.72□□□□□ -0.37
CUX1-214ENST00000550008 OR13A1Q8NGR1 328 aa12.72□□□□□ -0.37
CUX1-214ENST00000550008 PROK2Q9HC23 129 aa12.72□□□□□ -0.37
CUX1-214ENST00000550008 LYRM2Q9NU23 88 aaPredicted RBP12.72□□□□□ -0.37
CUX1-214ENST00000550008 PCNX3Q9H6A9 2034 aa12.71□□□□□ -0.37
CUX1-214ENST00000550008 MARCH11A6NNE9 402 aa12.71□□□□□ -0.37
CUX1-214ENST00000550008 SUPT4H1P63272 117 aaKnown RBP12.71□□□□□ -0.37
CUX1-214ENST00000550008 BSXQ3C1V8 233 aa12.71□□□□□ -0.37
CUX1-214ENST00000550008 ABHD12Q8N2K0 398 aa12.71□□□□□ -0.37
CUX1-214ENST00000550008 NEIL1Q96FI4 390 aaPredicted RBP12.71□□□□□ -0.37
CUX1-214ENST00000550008 PRO1933Q9H354 126 aa12.71□□□□□ -0.37
CUX1-214ENST00000550008 ZDHHC11Q9H8X9 412 aa12.71□□□□□ -0.37
CUX1-214ENST00000550008 ZNF331Q9NQX6 463 aaPredicted RBP12.71□□□□□ -0.37
CUX1-214ENST00000550008 COL4A3Q01955 1670 aa12.71□□□□□ -0.37
CUX1-214ENST00000550008 HIF1ANQ9NWT6 349 aa12.71□□□□□ -0.37
CUX1-214ENST00000550008 IGHV2OR16-5A0A0B4J2B6 119 aa12.71□□□□□ -0.38
CUX1-214ENST00000550008 MMP7P09237 267 aaPredicted RBP12.71□□□□□ -0.38
CUX1-214ENST00000550008 TCL1AP56279 114 aa12.71□□□□□ -0.38
CUX1-214ENST00000550008 ZNF645Q8N7E2 425 aa12.71□□□□□ -0.38
CUX1-214ENST00000550008 ZBTB34Q8NCN2 500 aa12.71□□□□□ -0.38
CUX1-214ENST00000550008 FLYWCH2Q96CP2 140 aaKnown RBP12.71□□□□□ -0.38
CUX1-214ENST00000550008 RYDENQ9NUL5 291 aaKnown RBP12.71□□□□□ -0.38
CUX1-214ENST00000550008 OBSL1O75147 1896 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 FABP4P15090 132 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 NTF4P34130 210 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 UCP3P55916 312 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 PSG5Q15238 335 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 ATP6V1FQ16864 119 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 KRTCAP3Q53RY4 240 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 OR10D4PQ8NGN7 298 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 MRPL30Q8TCC3 161 aaKnown RBP12.7□□□□□ -0.38
CUX1-214ENST00000550008 ZDHHC16Q969W1 377 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 GALNT14Q96FL9 552 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 FAM103A1Q9BTL3 118 aaKnown RBP12.7□□□□□ -0.38
CUX1-214ENST00000550008 CTDSP1Q9GZU7 261 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 TMPRSS5Q9H3S3 457 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 TRAV24A0A0B4J272 114 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 RAB29O14966 203 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 SRSF10O75494 262 aaKnown RBP12.7□□□□□ -0.38
CUX1-214ENST00000550008 IL18BPO95998 194 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 BPIFB3P59826 476 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 RHOBP62745 196 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 SPNS3Q6ZMD2 512 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 FAM216BQ8N7L0 139 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 ZNF439Q8NDP4 499 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 LINC01560Q8TB33 94 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 SNX22Q96L94 193 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 HS3ST6Q96QI5 342 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 INSIG2Q9Y5U4 225 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 DUXBA0A1W2PPF3 345 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 GALR1P47211 349 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 DBX2Q6ZNG2 339 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 ADTRPQ96IZ2 230 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 CEP295Q9C0D2 2601 aa12.7□□□□□ -0.38
CUX1-214ENST00000550008 CD1BP29016 333 aa12.69□□□□□ -0.38
CUX1-214ENST00000550008 MRPS18CQ9Y3D5 142 aaKnown RBP12.69□□□□□ -0.38
CUX1-214ENST00000550008 C17orf98A8MV24 154 aa12.69□□□□□ -0.38
CUX1-214ENST00000550008 SMIM6P0DI80 62 aa12.69□□□□□ -0.38
CUX1-214ENST00000550008 TNFRSF9Q07011 255 aa12.69□□□□□ -0.38
CUX1-214ENST00000550008 HIST3H3Q16695 136 aa12.69□□□□□ -0.38
CUX1-214ENST00000550008 SCNM1Q9BWG6 230 aa12.69□□□□□ -0.38
CUX1-214ENST00000550008 SH2D2AQ9NP31 389 aa12.69□□□□□ -0.38
CUX1-214ENST00000550008 CISD1Q9NZ45 108 aaKnown RBP12.69□□□□□ -0.38
CUX1-214ENST00000550008 VAX2Q9UIW0 290 aa12.69□□□□□ -0.38
CUX1-214ENST00000550008 PIEZO1Q92508 2521 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms