RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 FAM231CP0DMU5 169 aa1.78□□□□□ -2.12
VPS29-205ENST00000548539 GZMBP10144 247 aa1.78□□□□□ -2.12
VPS29-205ENST00000548539 MAGEA2P43356 314 aa1.78□□□□□ -2.12
VPS29-205ENST00000548539 RPS24P62847 133 aaKnown RBP1.78□□□□□ -2.12
VPS29-205ENST00000548539 HES1Q14469 280 aa1.78□□□□□ -2.12
VPS29-205ENST00000548539 SLC36A2Q495M3 483 aa1.78□□□□□ -2.12
VPS29-205ENST00000548539 TNFAIP8L2Q6P589 184 aaPredicted RBP1.78□□□□□ -2.12
VPS29-205ENST00000548539 OR11H2Q8NH07 326 aa1.78□□□□□ -2.12
VPS29-205ENST00000548539 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP1.78□□□□□ -2.12
VPS29-205ENST00000548539 ANKRD36BP1Q96IX9 119 aa1.78□□□□□ -2.12
VPS29-205ENST00000548539 KRTAP4-1Q9BYQ7 146 aa1.78□□□□□ -2.12
VPS29-205ENST00000548539 NKX6-2Q9C056 277 aaPredicted RBP1.78□□□□□ -2.12
VPS29-205ENST00000548539 BABAM2Q9NXR7 383 aa1.78□□□□□ -2.12
VPS29-205ENST00000548539 USE1Q9NZ43 259 aa1.78□□□□□ -2.12
VPS29-205ENST00000548539 DKKL1Q9UK85 242 aa1.78□□□□□ -2.12
VPS29-205ENST00000548539 C11orf86A6NJI1 115 aa1.77□□□□□ -2.13
VPS29-205ENST00000548539 CXCR6O00574 342 aa1.77□□□□□ -2.13
VPS29-205ENST00000548539 UBFD1O14562 309 aaKnown RBP1.77□□□□□ -2.13
VPS29-205ENST00000548539 APOEP02649 317 aa1.77□□□□□ -2.13
VPS29-205ENST00000548539 RPS12P25398 132 aaKnown RBP1.77□□□□□ -2.13
VPS29-205ENST00000548539 RPL12P30050 165 aaKnown RBP1.77□□□□□ -2.13
VPS29-205ENST00000548539 EBPQ15125 230 aaKnown RBP1.77□□□□□ -2.13
VPS29-205ENST00000548539 HSP90B2PQ58FF3 399 aa1.77□□□□□ -2.13
VPS29-205ENST00000548539 N4BP2L1Q5TBK1 243 aaPredicted RBP1.77□□□□□ -2.13
VPS29-205ENST00000548539 RASSF6Q6ZTQ3 369 aa1.77□□□□□ -2.13
VPS29-205ENST00000548539 SPATA12Q7Z6I5 190 aa1.77□□□□□ -2.13
VPS29-205ENST00000548539 CNEP1R1Q8N9A8 125 aa1.77□□□□□ -2.13
VPS29-205ENST00000548539 TMEM161BQ8NDZ6 487 aa1.77□□□□□ -2.13
VPS29-205ENST00000548539 HAVCR2Q8TDQ0 301 aa1.77□□□□□ -2.13
VPS29-205ENST00000548539 C12orf43Q96C57 262 aaKnown RBP1.77□□□□□ -2.13
VPS29-205ENST00000548539 MS4A6EQ96DS6 147 aa1.77□□□□□ -2.13
VPS29-205ENST00000548539 PECRQ9BY49 303 aa1.77□□□□□ -2.13
VPS29-205ENST00000548539 HES4Q9HCC6 221 aa1.77□□□□□ -2.13
VPS29-205ENST00000548539 NOSIPQ9Y314 301 aaKnown RBP1.77□□□□□ -2.13
VPS29-205ENST00000548539 POLR3HQ9Y535 204 aaPredicted RBP1.77□□□□□ -2.13
VPS29-205ENST00000548539 KMT2EQ8IZD2 1858 aa1.77□□□□□ -2.13
VPS29-205ENST00000548539 LTBP2Q14767 1821 aa1.76□□□□□ -2.13
VPS29-205ENST00000548539 GRIFINA4D1Z8 144 aa1.76□□□□□ -2.13
VPS29-205ENST00000548539 OR5K4A6NMS3 321 aa1.76□□□□□ -2.13
VPS29-205ENST00000548539 H3BPC8 53 aa1.76□□□□□ -2.13
VPS29-205ENST00000548539 MT-CO2P00403 227 aa1.76□□□□□ -2.13
VPS29-205ENST00000548539 IGHV1-69P01742 117 aa1.76□□□□□ -2.13
VPS29-205ENST00000548539 IL3P08700 152 aa1.76□□□□□ -2.13
VPS29-205ENST00000548539 C8orf88P0DMB2 117 aa1.76□□□□□ -2.13
VPS29-205ENST00000548539 REG1BP48304 166 aa1.76□□□□□ -2.13
VPS29-205ENST00000548539 PSMD8P48556 350 aa1.76□□□□□ -2.13
VPS29-205ENST00000548539 BTN3A2P78410 334 aa1.76□□□□□ -2.13
VPS29-205ENST00000548539 RSU1Q15404 277 aa1.76□□□□□ -2.13
VPS29-205ENST00000548539 GLT6D1Q7Z4J2 308 aa1.76□□□□□ -2.13
VPS29-205ENST00000548539 SLC51BQ86UW2 128 aa1.76□□□□□ -2.13
VPS29-205ENST00000548539 UBL4BQ8N7F7 174 aa1.76□□□□□ -2.13
VPS29-205ENST00000548539 PIGXQ8TBF5 258 aa1.76□□□□□ -2.13
VPS29-205ENST00000548539 RNASE6Q93091 150 aaKnown RBP1.76□□□□□ -2.13
VPS29-205ENST00000548539 TESCQ96BS2 214 aa1.76□□□□□ -2.13
VPS29-205ENST00000548539 CPNE2Q96FN4 548 aaPredicted RBP1.76□□□□□ -2.13
VPS29-205ENST00000548539 SFRP2Q96HF1 295 aa1.76□□□□□ -2.13
VPS29-205ENST00000548539 NMNAT3Q96T66 252 aa1.76□□□□□ -2.13
VPS29-205ENST00000548539 MIEN1Q9BRT3 115 aa1.76□□□□□ -2.13
VPS29-205ENST00000548539 POLR1DQ9Y2S0 133 aa1.76□□□□□ -2.13
VPS29-205ENST00000548539 PLXNB1O43157 2135 aa1.76□□□□□ -2.13
VPS29-205ENST00000548539 NLRC5Q86WI3 1866 aa1.75□□□□□ -2.13
VPS29-205ENST00000548539 OR6C6A6NF89 314 aa1.75□□□□□ -2.13
VPS29-205ENST00000548539 KNCNA6PVL3 124 aa1.75□□□□□ -2.13
VPS29-205ENST00000548539 EVPLLA8MZ36 301 aa1.75□□□□□ -2.13
VPS29-205ENST00000548539 LRRN3E7EW58 273 aa1.75□□□□□ -2.13
VPS29-205ENST00000548539 SLC16A4O15374 487 aa1.75□□□□□ -2.13
VPS29-205ENST00000548539 ALOX5APP20292 161 aa1.75□□□□□ -2.13
VPS29-205ENST00000548539 TAS2R30P59541 319 aa1.75□□□□□ -2.13
VPS29-205ENST00000548539 SS18Q15532 418 aa1.75□□□□□ -2.13
VPS29-205ENST00000548539 C1orf195Q5TG92 126 aa1.75□□□□□ -2.13
VPS29-205ENST00000548539 LRRN1Q6UXK5 716 aa1.75□□□□□ -2.13
VPS29-205ENST00000548539 HIST2H3AQ71DI3 136 aa1.75□□□□□ -2.13
VPS29-205ENST00000548539 ZNF767PQ75MW2 155 aa1.75□□□□□ -2.13
VPS29-205ENST00000548539 RAB2BQ8WUD1 216 aa1.75□□□□□ -2.13
VPS29-205ENST00000548539 RAB8BQ92930 207 aa1.75□□□□□ -2.13
VPS29-205ENST00000548539 PSORS1C2Q9UIG4 136 aa1.75□□□□□ -2.13
VPS29-205ENST00000548539 ZNF407Q9C0G0 2248 aa1.74□□□□□ -2.13
VPS29-205ENST00000548539 MUC21A0A0G2JKD1 596 aa1.74□□□□□ -2.13
VPS29-205ENST00000548539 MUC21A0A140T8X8 626 aa1.74□□□□□ -2.13
VPS29-205ENST00000548539 A0A1W2PQL4 384 aaPredicted RBP1.74□□□□□ -2.13
VPS29-205ENST00000548539 C21orf140B9A014 251 aa1.74□□□□□ -2.13
VPS29-205ENST00000548539 GNRH2O43555 120 aa1.74□□□□□ -2.13
VPS29-205ENST00000548539 ZNF140P52738 457 aaPredicted RBP1.74□□□□□ -2.13
VPS29-205ENST00000548539 GNA12Q03113 381 aa1.74□□□□□ -2.13
VPS29-205ENST00000548539 CHCHD2P9Q5T1J5 151 aaPredicted RBP1.74□□□□□ -2.13
VPS29-205ENST00000548539 C1orf194Q5T5A4 169 aa1.74□□□□□ -2.13
VPS29-205ENST00000548539 OGFRL1Q5TC84 451 aaPredicted RBP1.74□□□□□ -2.13
VPS29-205ENST00000548539 OR10K2Q6IF99 312 aa1.74□□□□□ -2.13
VPS29-205ENST00000548539 SBSNQ6UWP8 590 aa1.74□□□□□ -2.13
VPS29-205ENST00000548539 SLC35F6Q8N357 371 aa1.74□□□□□ -2.13
VPS29-205ENST00000548539 OR2T27Q8NH04 317 aa1.74□□□□□ -2.13
VPS29-205ENST00000548539 OR4X1Q8NH49 305 aa1.74□□□□□ -2.13
VPS29-205ENST00000548539 ARL5BQ96KC2 179 aa1.74□□□□□ -2.13
VPS29-205ENST00000548539 TTTY12Q9BZ98 90 aa1.74□□□□□ -2.13
VPS29-205ENST00000548539 CXorf21Q9HAI6 301 aa1.74□□□□□ -2.13
VPS29-205ENST00000548539 HRASLSQ9HDD0 168 aa1.74□□□□□ -2.13
VPS29-205ENST00000548539 THSD7AQ9UPZ6 1657 aa1.74□□□□□ -2.13
VPS29-205ENST00000548539 ABCC11Q96J66 1382 aa1.73□□□□□ -2.13
VPS29-205ENST00000548539 KIF15Q9NS87 1388 aa1.73□□□□□ -2.13
VPS29-205ENST00000548539 IGHV3-15A0A0B4J1V0 119 aa1.73□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms