RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 ZNF134P52741 427 aa11.48□□□□□ -0.57
CLSTN3-216ENST00000545663 NANOS2P60321 138 aaKnown RBP11.48□□□□□ -0.57
CLSTN3-216ENST00000545663 ACTBL2Q562R1 376 aa11.48□□□□□ -0.57
CLSTN3-216ENST00000545663 RSBN1Q5VWQ0 802 aaPredicted RBP11.48□□□□□ -0.57
CLSTN3-216ENST00000545663 AWAT2Q6E213 333 aa11.48□□□□□ -0.57
CLSTN3-216ENST00000545663 SLC25A48Q6ZT89 311 aaKnown RBP11.48□□□□□ -0.57
CLSTN3-216ENST00000545663 LINC00596Q86U02 117 aa11.48□□□□□ -0.57
CLSTN3-216ENST00000545663 LAX1Q8IWV1 398 aa11.48□□□□□ -0.57
CLSTN3-216ENST00000545663 OR5D18Q8NGL1 313 aa11.48□□□□□ -0.57
CLSTN3-216ENST00000545663 ABHD5Q8WTS1 349 aa11.48□□□□□ -0.57
CLSTN3-216ENST00000545663 LOC102724200A0A096LPH7 203 aaPredicted RBP11.47□□□□□ -0.57
CLSTN3-216ENST00000545663 NOTOA8MTQ0 251 aa11.47□□□□□ -0.57
CLSTN3-216ENST00000545663 SLC17A2O00624 439 aa11.47□□□□□ -0.57
CLSTN3-216ENST00000545663 SLC22A1O15245 554 aa11.47□□□□□ -0.57
CLSTN3-216ENST00000545663 GTF2F2P13984 249 aa11.47□□□□□ -0.57
CLSTN3-216ENST00000545663 BMI1P35226 326 aa11.47□□□□□ -0.57
CLSTN3-216ENST00000545663 DEFA5Q01523 94 aa11.47□□□□□ -0.57
CLSTN3-216ENST00000545663 RAB11BQ15907 218 aa11.47□□□□□ -0.57
CLSTN3-216ENST00000545663 PAN3Q58A45 887 aaKnown RBP11.47□□□□□ -0.57
CLSTN3-216ENST00000545663 NHLRC3Q5JS37 347 aa11.47□□□□□ -0.57
CLSTN3-216ENST00000545663 PYHIN1Q6K0P9 492 aa11.47□□□□□ -0.57
CLSTN3-216ENST00000545663 UNQ5815/PRO19632Q6UWF5 114 aa11.47□□□□□ -0.57
CLSTN3-216ENST00000545663 PPP1R27Q86WC6 154 aa11.47□□□□□ -0.57
CLSTN3-216ENST00000545663 ZNF645Q8N7E2 425 aa11.47□□□□□ -0.57
CLSTN3-216ENST00000545663 GVQW1Q8N7I0 195 aa11.47□□□□□ -0.57
CLSTN3-216ENST00000545663 OR2K2Q8NGT1 345 aa11.47□□□□□ -0.57
CLSTN3-216ENST00000545663 RAB2BQ8WUD1 216 aa11.47□□□□□ -0.57
CLSTN3-216ENST00000545663 ORAI1Q96D31 301 aa11.47□□□□□ -0.57
CLSTN3-216ENST00000545663 ZNF251Q9BRH9 671 aa11.47□□□□□ -0.57
CLSTN3-216ENST00000545663 NCOR1P1Q9H4R4 102 aa11.47□□□□□ -0.57
CLSTN3-216ENST00000545663 ING4Q9UNL4 249 aa11.47□□□□□ -0.57
CLSTN3-216ENST00000545663 AIPO00170 330 aa11.46□□□□□ -0.57
CLSTN3-216ENST00000545663 GABARAPO95166 117 aa11.46□□□□□ -0.57
CLSTN3-216ENST00000545663 EDN2P20800 178 aa11.46□□□□□ -0.57
CLSTN3-216ENST00000545663 TMBIM6P55061 237 aa11.46□□□□□ -0.57
CLSTN3-216ENST00000545663 SCAND1P57086 179 aa11.46□□□□□ -0.57
CLSTN3-216ENST00000545663 IL13RA2Q14627 380 aa11.46□□□□□ -0.57
CLSTN3-216ENST00000545663 DEFB135Q30KP9 77 aa11.46□□□□□ -0.57
CLSTN3-216ENST00000545663 ZNF660Q6AZW8 331 aaPredicted RBP11.46□□□□□ -0.57
CLSTN3-216ENST00000545663 GLIPR1L1Q6UWM5 242 aa11.46□□□□□ -0.57
CLSTN3-216ENST00000545663 C8orf31Q8N9H6 132 aa11.46□□□□□ -0.57
CLSTN3-216ENST00000545663 LFNGQ8NES3 379 aa11.46□□□□□ -0.57
CLSTN3-216ENST00000545663 KCNG3Q8TAE7 436 aa11.46□□□□□ -0.57
CLSTN3-216ENST00000545663 WDR89Q96FK6 387 aaPredicted RBP11.46□□□□□ -0.57
CLSTN3-216ENST00000545663 BARHL1Q9BZE3 327 aa11.46□□□□□ -0.57
CLSTN3-216ENST00000545663 SPACA1Q9HBV2 294 aa11.46□□□□□ -0.57
CLSTN3-216ENST00000545663 GFOD1Q9NXC2 390 aa11.46□□□□□ -0.57
CLSTN3-216ENST00000545663 NDUFA13Q9P0J0 144 aa11.46□□□□□ -0.57
CLSTN3-216ENST00000545663 ZNF581Q9P0T4 197 aa11.46□□□□□ -0.57
CLSTN3-216ENST00000545663 APLNQ9ULZ1 77 aa11.46□□□□□ -0.57
CLSTN3-216ENST00000545663 AK6Q9Y3D8 172 aaKnown RBP11.46□□□□□ -0.57
CLSTN3-216ENST00000545663 C13orf42A0A1B0GVH6 325 aa11.45□□□□□ -0.58
CLSTN3-216ENST00000545663 FAM90A7PA6NKC0 464 aa11.45□□□□□ -0.58
CLSTN3-216ENST00000545663 IFITM5A6NNB3 132 aa11.45□□□□□ -0.58
CLSTN3-216ENST00000545663 FAM90A23PA8MXZ1 464 aa11.45□□□□□ -0.58
CLSTN3-216ENST00000545663 C15orf65H3BRN8 121 aa11.45□□□□□ -0.58
CLSTN3-216ENST00000545663 TXNL1O43396 289 aa11.45□□□□□ -0.58
CLSTN3-216ENST00000545663 HTR3BO95264 441 aa11.45□□□□□ -0.58
CLSTN3-216ENST00000545663 MPV17LQ2QL34 196 aa11.45□□□□□ -0.58
CLSTN3-216ENST00000545663 CT45A1Q5HYN5 189 aa11.45□□□□□ -0.58
CLSTN3-216ENST00000545663 GPR107Q5VW38 600 aa11.45□□□□□ -0.58
CLSTN3-216ENST00000545663 TCTEX1D1Q8N7M0 179 aa11.45□□□□□ -0.58
CLSTN3-216ENST00000545663 NPBQ8NG41 125 aa11.45□□□□□ -0.58
CLSTN3-216ENST00000545663 CT45A3Q8NHU0 189 aa11.45□□□□□ -0.58
CLSTN3-216ENST00000545663 ARL11Q969Q4 196 aa11.45□□□□□ -0.58
CLSTN3-216ENST00000545663 CENPOQ9BU64 300 aa11.45□□□□□ -0.58
CLSTN3-216ENST00000545663 FBXL15Q9H469 300 aa11.45□□□□□ -0.58
CLSTN3-216ENST00000545663 FBXL17Q9UF56 701 aa11.45□□□□□ -0.58
CLSTN3-216ENST00000545663 STEAP1Q9UHE8 339 aa11.45□□□□□ -0.58
CLSTN3-216ENST00000545663 M0R2N4 97 aa11.44□□□□□ -0.58
CLSTN3-216ENST00000545663 CDRT1O95170 752 aa11.44□□□□□ -0.58
CLSTN3-216ENST00000545663 SDC2P34741 201 aa11.44□□□□□ -0.58
CLSTN3-216ENST00000545663 ZNF137PP52743 207 aa11.44□□□□□ -0.58
CLSTN3-216ENST00000545663 TMEM267Q0VDI3 215 aaPredicted RBP11.44□□□□□ -0.58
CLSTN3-216ENST00000545663 DEFB114Q30KQ6 69 aa11.44□□□□□ -0.58
CLSTN3-216ENST00000545663 SLC22A6Q4U2R8 563 aa11.44□□□□□ -0.58
CLSTN3-216ENST00000545663 Q8N1X5 172 aa11.44□□□□□ -0.58
CLSTN3-216ENST00000545663 ZNF439Q8NDP4 499 aa11.44□□□□□ -0.58
CLSTN3-216ENST00000545663 PTX4Q96A99 478 aa11.44□□□□□ -0.58
CLSTN3-216ENST00000545663 URM1Q9BTM9 101 aaKnown RBP11.44□□□□□ -0.58
CLSTN3-216ENST00000545663 PARP12Q9H0J9 701 aaKnown RBP11.44□□□□□ -0.58
CLSTN3-216ENST00000545663 SLA2Q9H6Q3 261 aa11.44□□□□□ -0.58
CLSTN3-216ENST00000545663 ZNF355PQ9NSJ1 428 aa11.44□□□□□ -0.58
CLSTN3-216ENST00000545663 TP53TG1Q9Y2A0 90 aa11.44□□□□□ -0.58
CLSTN3-216ENST00000545663 ZNF701M0R085 212 aaPredicted RBP11.43□□□□□ -0.58
CLSTN3-216ENST00000545663 SCGNO76038 276 aa11.43□□□□□ -0.58
CLSTN3-216ENST00000545663 CTRB1P17538 263 aa11.43□□□□□ -0.58
CLSTN3-216ENST00000545663 SERPINA2P20848 420 aa11.43□□□□□ -0.58
CLSTN3-216ENST00000545663 KCNJ3P48549 501 aa11.43□□□□□ -0.58
CLSTN3-216ENST00000545663 TATDN3Q17R31 274 aa11.43□□□□□ -0.58
CLSTN3-216ENST00000545663 AKIRIN2Q53H80 203 aa11.43□□□□□ -0.58
CLSTN3-216ENST00000545663 CTRB2Q6GPI1 263 aa11.43□□□□□ -0.58
CLSTN3-216ENST00000545663 CLVS1Q8IUQ0 354 aaPredicted RBP11.43□□□□□ -0.58
CLSTN3-216ENST00000545663 TMEM217Q8N7C4 229 aa11.43□□□□□ -0.58
CLSTN3-216ENST00000545663 OR52M1Q8NGK5 317 aa11.43□□□□□ -0.58
CLSTN3-216ENST00000545663 C2CD4CQ8TF44 421 aa11.43□□□□□ -0.58
CLSTN3-216ENST00000545663 CCDC107Q8WV48 283 aa11.43□□□□□ -0.58
CLSTN3-216ENST00000545663 FAM3DQ96BQ1 224 aa11.43□□□□□ -0.58
CLSTN3-216ENST00000545663 MRPL20Q9BYC9 149 aaKnown RBP11.43□□□□□ -0.58
CLSTN3-216ENST00000545663 IFT22Q9H7X7 185 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms