RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 S1PR3Q99500 378 aa7.54□□□□□ -1.2
DDX55-208ENST00000541259 SLC25A21Q9BQT8 299 aaPredicted RBP7.54□□□□□ -1.2
DDX55-208ENST00000541259 MRPL20Q9BYC9 149 aaKnown RBP7.54□□□□□ -1.2
DDX55-208ENST00000541259 C20orf85Q9H1P6 137 aa7.54□□□□□ -1.2
DDX55-208ENST00000541259 NUP50Q9UKX7 468 aa7.54□□□□□ -1.2
DDX55-208ENST00000541259 TBL2Q9Y4P3 447 aaKnown RBP7.54□□□□□ -1.2
DDX55-208ENST00000541259 AMMECR1Q9Y4X0 333 aaPredicted RBP7.54□□□□□ -1.2
DDX55-208ENST00000541259 PLXNB1O43157 2135 aa7.54□□□□□ -1.2
DDX55-208ENST00000541259 MDFIC2A0A1B0GVS7 189 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 SLC22A5O76082 557 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 PTTG1O95997 202 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 PF4P02776 101 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 GAPDHP04406 335 aaKnown RBP7.53□□□□□ -1.2
DDX55-208ENST00000541259 H2AFB2P0C5Z0 115 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 VSIG10L2P0DP72 767 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 AKR1C4P17516 323 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 IL3RAP26951 378 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 DUTP33316 252 aaKnown RBP7.53□□□□□ -1.2
DDX55-208ENST00000541259 ECI1P42126 302 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 PIGPP57054 158 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 BRWD1-AS2P59051 145 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 SURF2Q15527 256 aaPredicted RBP7.53□□□□□ -1.2
DDX55-208ENST00000541259 MSMO1Q15800 293 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 RGS21Q2M5E4 152 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 ABCA11PQ4W5N1 156 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 MINOS1Q5TGZ0 78 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 CCBE1Q6UXH8 406 aaPredicted RBP7.53□□□□□ -1.2
DDX55-208ENST00000541259 TBC1D26Q86UD7 250 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 TGIF2LXQ8IUE1 241 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.53□□□□□ -1.2
DDX55-208ENST00000541259 ZBTB34Q8NCN2 500 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 FAM216AQ8WUB2 273 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 CAPSLQ8WWF8 208 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 RPEQ96AT9 228 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 AKR1E2Q96JD6 320 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 SCGB3A2Q96PL1 93 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 NABP2Q9BQ15 211 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 MS4A7Q9GZW8 240 aaPredicted RBP7.53□□□□□ -1.2
DDX55-208ENST00000541259 GHITMQ9H3K2 345 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 SLC2A9Q9NRM0 540 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 NUDT15Q9NV35 164 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 C14orf166Q9Y224 244 aaKnown RBP7.53□□□□□ -1.2
DDX55-208ENST00000541259 NUBP2Q9Y5Y2 271 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 MINOS1-NBL1R4GNA1 71 aa7.53□□□□□ -1.2
DDX55-208ENST00000541259 TEP1Q99973 2627 aaKnown RBP7.52□□□□□ -1.21
DDX55-208ENST00000541259 NSD1Q96L73 2696 aaPredicted RBP7.52□□□□□ -1.21
DDX55-208ENST00000541259 FN1P02751 2386 aaKnown RBP7.52□□□□□ -1.21
DDX55-208ENST00000541259 IGHV3-72A0A0B4J1Y9 119 aa7.52□□□□□ -1.21
DDX55-208ENST00000541259 IGHV1-3A0A0C4DH29 117 aa7.52□□□□□ -1.21
DDX55-208ENST00000541259 A0A1W2PPI3 338 aa7.52□□□□□ -1.21
DDX55-208ENST00000541259 MPPED1O15442 326 aa7.52□□□□□ -1.21
DDX55-208ENST00000541259 CD24P25063 80 aa7.52□□□□□ -1.21
DDX55-208ENST00000541259 CEACAM3P40198 252 aa7.52□□□□□ -1.21
DDX55-208ENST00000541259 RAB13P51153 203 aa7.52□□□□□ -1.21
DDX55-208ENST00000541259 RND3P61587 244 aa7.52□□□□□ -1.21
DDX55-208ENST00000541259 ZNF816Q0VGE8 651 aaPredicted RBP7.52□□□□□ -1.21
DDX55-208ENST00000541259 OXA1LQ15070 435 aa7.52□□□□□ -1.21
DDX55-208ENST00000541259 DEFB112Q30KQ8 113 aa7.52□□□□□ -1.21
DDX55-208ENST00000541259 FBLN7Q53RD9 439 aa7.52□□□□□ -1.21
DDX55-208ENST00000541259 OR2B11Q5JQS5 317 aa7.52□□□□□ -1.21
DDX55-208ENST00000541259 MOB3BQ86TA1 216 aa7.52□□□□□ -1.21
DDX55-208ENST00000541259 SLC25A42Q86VD7 318 aa7.52□□□□□ -1.21
DDX55-208ENST00000541259 CMTM1Q8IZ96 169 aa7.52□□□□□ -1.21
DDX55-208ENST00000541259 CENPSQ8N2Z9 138 aa7.52□□□□□ -1.21
DDX55-208ENST00000541259 OR51H1Q8NH63 302 aa7.52□□□□□ -1.21
DDX55-208ENST00000541259 TCTEX1D2Q8WW35 142 aa7.52□□□□□ -1.21
DDX55-208ENST00000541259 DDB2Q92466 427 aa7.52□□□□□ -1.21
DDX55-208ENST00000541259 MALSU1Q96EH3 234 aa7.52□□□□□ -1.21
DDX55-208ENST00000541259 ZNF486Q96H40 463 aaPredicted RBP7.52□□□□□ -1.21
DDX55-208ENST00000541259 TMEM160Q9NX00 188 aa7.52□□□□□ -1.21
DDX55-208ENST00000541259 PRR13Q9NZ81 148 aa7.52□□□□□ -1.21
DDX55-208ENST00000541259 COPZ2Q9P299 210 aa7.52□□□□□ -1.21
DDX55-208ENST00000541259 TNCP24821 2201 aa7.52□□□□□ -1.21
DDX55-208ENST00000541259 TET2Q6N021 2002 aaPredicted RBP7.52□□□□□ -1.21
DDX55-208ENST00000541259 CRYM-AS1A6NIL9 109 aa7.51□□□□□ -1.21
DDX55-208ENST00000541259 INAFM1C9JVW0 142 aa7.51□□□□□ -1.21
DDX55-208ENST00000541259 INMT-MINDY4F8WBC2 141 aa7.51□□□□□ -1.21
DDX55-208ENST00000541259 TIMM23O14925 209 aa7.51□□□□□ -1.21
DDX55-208ENST00000541259 OR4E1P0C645 316 aa7.51□□□□□ -1.21
DDX55-208ENST00000541259 F2RP25116 425 aa7.51□□□□□ -1.21
DDX55-208ENST00000541259 SRP14P37108 136 aaKnown RBP7.51□□□□□ -1.21
DDX55-208ENST00000541259 THBS3P49746 956 aa7.51□□□□□ -1.21
DDX55-208ENST00000541259 SUPT4H1P63272 117 aaKnown RBP7.51□□□□□ -1.21
DDX55-208ENST00000541259 DHODHQ02127 395 aa7.51□□□□□ -1.21
DDX55-208ENST00000541259 ID3Q02535 119 aa7.51□□□□□ -1.21
DDX55-208ENST00000541259 PPP1R1AQ13522 171 aa7.51□□□□□ -1.21
DDX55-208ENST00000541259 TRIM16LQ309B1 348 aa7.51□□□□□ -1.21
DDX55-208ENST00000541259 SP6Q3SY56 376 aa7.51□□□□□ -1.21
DDX55-208ENST00000541259 FAM71F2Q6NXP2 309 aa7.51□□□□□ -1.21
DDX55-208ENST00000541259 PLET1Q6UQ28 207 aa7.51□□□□□ -1.21
DDX55-208ENST00000541259 ZNF66Q6ZN08 573 aa7.51□□□□□ -1.21
DDX55-208ENST00000541259 C9orf139Q6ZV77 190 aa7.51□□□□□ -1.21
DDX55-208ENST00000541259 OR52B4Q8NGK2 314 aa7.51□□□□□ -1.21
DDX55-208ENST00000541259 CHPT1Q8WUD6 406 aa7.51□□□□□ -1.21
DDX55-208ENST00000541259 CFHR4Q92496 578 aa7.51□□□□□ -1.21
DDX55-208ENST00000541259 RITA1Q96K30 269 aa7.51□□□□□ -1.21
DDX55-208ENST00000541259 RHOVQ96L33 236 aa7.51□□□□□ -1.21
DDX55-208ENST00000541259 ZNF48Q96MX3 618 aaPredicted RBP7.51□□□□□ -1.21
DDX55-208ENST00000541259 TP53RKQ96S44 253 aa7.51□□□□□ -1.21
DDX55-208ENST00000541259 HSD17B10Q99714 261 aaKnown RBP7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms