RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 DCAF12Q5T6F0 453 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 OR10X1Q8NGY0 326 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 SCAMP4Q969E2 229 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 GPX7Q96SL4 187 aaPredicted RBP8.03□□□□□ -1.12
CLIP1-214ENST00000540539 AICDAQ9GZX7 198 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 SPCS1Q9Y6A9 102 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 BDP1A6H8Y1 2624 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 TDRD6O60522 2096 aaKnown RBP8.03□□□□□ -1.12
CLIP1-214ENST00000540539 ZNF878C9JN71 531 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 HMGB3O15347 200 aaKnown RBP8.03□□□□□ -1.12
CLIP1-214ENST00000540539 STATHP02808 62 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 SPINT3P49223 89 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 ZNF90Q03938 601 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 RNF44Q7L0R7 432 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 DOLPP1Q86YN1 238 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 NEIL1Q96FI4 390 aaPredicted RBP8.03□□□□□ -1.12
CLIP1-214ENST00000540539 C5orf30Q96GV9 206 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 GPR82Q96P67 336 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 SPACA5Q96QH8 159 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 NRTNQ99748 197 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 CRIM1Q9NZV1 1036 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 CLCF1Q9UBD9 225 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 ERRFI1Q9UJM3 462 aaPredicted RBP8.03□□□□□ -1.12
CLIP1-214ENST00000540539 TRAPPC2LQ9UL33 140 aa8.03□□□□□ -1.12
CLIP1-214ENST00000540539 A0A0G2JLM5 398 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 LRP5LA4QPB2 252 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 LATO43561 262 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 HLA-DRB1P01911 266 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 KIR2DL1P43626 348 aaPredicted RBP8.02□□□□□ -1.13
CLIP1-214ENST00000540539 SEC11AP67812 179 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 ABCA11PQ4W5N1 156 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 C2orf27AQ580R0 203 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 LINC00114Q6XXX2 140 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 OR8B3Q8NGG8 313 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 C1orf147Q96MC9 270 aaPredicted RBP8.02□□□□□ -1.13
CLIP1-214ENST00000540539 OR8B2Q96RD0 313 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 SFXN3Q9BWM7 321 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 RAB1BQ9H0U4 201 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 WNT16Q9UBV4 365 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 EMC9Q9Y3B6 208 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 TTC28Q96AY4 2481 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 LOC101059948A0A1B0GTJ6 334 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 hDV102S1A0JD36 115 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 FAM181BA6NEQ2 426 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 MT-ATP6P00846 226 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 EGR1P18146 543 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 CMPK1P30085 196 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 UBE2G1P62253 170 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 ADIPOQQ15848 244 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 PRR31Q5SQ13 230 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 GLIPR1L1Q6UWM5 242 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 FAM57BQ71RH2 274 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 DUSP23Q9BVJ7 150 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 TMEM59Q9BXS4 323 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 PLAGL1Q9UM63 463 aa8.02□□□□□ -1.13
CLIP1-214ENST00000540539 hCG_38984A0A1B0GV85 526 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 SLC22A20A6NK97 555 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 C4orf51C9J302 202 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 H3BRM9 83 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 TMPRSS2O15393 492 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 CFHR2P36980 270 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 WASP42768 502 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 UQCRFS1P47985 274 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 ROM1Q03395 351 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 ATP5G2Q06055 141 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 FOXE3Q13461 319 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 SLC48A1Q6P1K1 146 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 ZNF562Q6V9R5 426 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 OR10G8Q8NGN5 311 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 VSTM2AQ8TAG5 236 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 WDR54Q9H977 334 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 SLC39A9Q9NUM3 307 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 NECAP2Q9NVZ3 263 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 KCNIP1Q9NZI2 227 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 TAC3Q9UHF0 121 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 MDFIC2A0A1B0GVS7 189 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 PRR33A8MZF0 331 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 VWC2LB2RUY7 222 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 PHF1O43189 567 aaPredicted RBP8.01□□□□□ -1.13
CLIP1-214ENST00000540539 NXPH3O95157 252 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 IGKV1D-33P01593 117 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 IGKV1-33P01594 117 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 USF1P22415 310 aaPredicted RBP8.01□□□□□ -1.13
CLIP1-214ENST00000540539 CRYBB3P26998 211 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 GPR183P32249 361 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 GPR1P46091 355 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 FABP6P51161 128 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 CTXN1P60606 82 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 RPP25LQ8N5L8 163 aaKnown RBP8.01□□□□□ -1.13
CLIP1-214ENST00000540539 STPG3Q8N7X2 389 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 SCGB1C1Q8TD33 95 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 ADAT3Q96EY9 351 aaPredicted RBP8.01□□□□□ -1.13
CLIP1-214ENST00000540539 QTRT1Q9BXR0 403 aaKnown RBP8.01□□□□□ -1.13
CLIP1-214ENST00000540539 ZNF835Q9Y2P0 537 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 ARL2-SNX15V9GYD0 113 aa8.01□□□□□ -1.13
CLIP1-214ENST00000540539 TRAV9-1A0A075B6T8 112 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 OR4C46A6NHA9 309 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 C2orf70A6NJV1 201 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 H3BP45 60 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 J3QR89 54 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms