RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 PRUNE2Q8WUY3 3088 aa9.04□□□□□ -0.96
CLIP1-213ENST00000540338 SRRM5B3KS81 715 aa9.04□□□□□ -0.96
CLIP1-213ENST00000540338 CYB5R3P00387 301 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-213ENST00000540338 OR4A8P0C604 315 aa9.04□□□□□ -0.96
CLIP1-213ENST00000540338 MST1LQ2TV78 715 aa9.04□□□□□ -0.96
CLIP1-213ENST00000540338 LOC105371267A0A1B0GV96 52 aa9.03□□□□□ -0.96
CLIP1-213ENST00000540338 H3BQ15 152 aa9.03□□□□□ -0.96
CLIP1-213ENST00000540338 K7N7A8 449 aa9.03□□□□□ -0.96
CLIP1-213ENST00000540338 ZG16O60844 167 aa9.03□□□□□ -0.96
CLIP1-213ENST00000540338 ARG1P05089 322 aa9.03□□□□□ -0.96
CLIP1-213ENST00000540338 CRYBA1P05813 215 aa9.03□□□□□ -0.96
CLIP1-213ENST00000540338 CD5P06127 495 aa9.03□□□□□ -0.96
CLIP1-213ENST00000540338 RAB13P51153 203 aa9.03□□□□□ -0.96
CLIP1-213ENST00000540338 HTD2P86397 168 aa9.03□□□□□ -0.96
CLIP1-213ENST00000540338 MRGPRGQ86SM5 289 aa9.03□□□□□ -0.96
CLIP1-213ENST00000540338 SLC35D1Q9NTN3 355 aa9.03□□□□□ -0.96
CLIP1-213ENST00000540338 FAM201AQ5SY85 155 aa9.03□□□□□ -0.96
CLIP1-213ENST00000540338 NCR3LG1Q68D85 454 aa9.03□□□□□ -0.96
CLIP1-213ENST00000540338 ZNF474Q6S9Z5 364 aaPredicted RBP9.03□□□□□ -0.96
CLIP1-213ENST00000540338 PSMG3Q9BT73 122 aaPredicted RBP9.03□□□□□ -0.96
CLIP1-213ENST00000540338 MS4A5Q9H3V2 200 aa9.03□□□□□ -0.96
CLIP1-213ENST00000540338 VAX2Q9UIW0 290 aa9.03□□□□□ -0.96
CLIP1-213ENST00000540338 HSPB1P04792 205 aaKnown RBP9.03□□□□□ -0.96
CLIP1-213ENST00000540338 LMO1P25800 156 aa9.03□□□□□ -0.96
CLIP1-213ENST00000540338 SPCS3P61009 180 aa9.03□□□□□ -0.96
CLIP1-213ENST00000540338 IGF2-ASQ6U949 168 aa9.03□□□□□ -0.96
CLIP1-213ENST00000540338 RPRMQ9NS64 109 aa9.03□□□□□ -0.96
CLIP1-213ENST00000540338 SZT2Q5T011 3432 aa9.03□□□□□ -0.96
CLIP1-213ENST00000540338 A0A1W2PPH5 198 aa9.02□□□□□ -0.96
CLIP1-213ENST00000540338 IGKV1-5P01602 117 aa9.02□□□□□ -0.96
CLIP1-213ENST00000540338 CD3EP07766 207 aa9.02□□□□□ -0.96
CLIP1-213ENST00000540338 RPL31P62899 125 aaKnown RBP9.02□□□□□ -0.96
CLIP1-213ENST00000540338 NKX6-1P78426 367 aaPredicted RBP9.02□□□□□ -0.96
CLIP1-213ENST00000540338 C22orf15Q8WYQ4 148 aa9.02□□□□□ -0.96
CLIP1-213ENST00000540338 COQ2Q96H96 371 aa9.02□□□□□ -0.96
CLIP1-213ENST00000540338 METRNQ9UJH8 293 aa9.02□□□□□ -0.96
CLIP1-213ENST00000540338 ROS1P08922 2347 aa9.02□□□□□ -0.96
CLIP1-213ENST00000540338 PPIAL4EA0A075B759 164 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 A0A0G2JRQ6 117 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 hCG_1809904A0A1W2PP81 198 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 A0A1W2PPE2 198 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 A0A1W2PR64 198 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 A0A1W2PRV1 198 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 PPIAL4DF5H284 164 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 RAMP3O60896 148 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 PPIAL4FP0DN26 164 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 CDC34P49427 236 aaPredicted RBP9.02□□□□□ -0.97
CLIP1-213ENST00000540338 SMUG1Q53HV7 270 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 CYB561D1Q8N8Q1 229 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 RHOVQ96L33 236 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 MRPL37Q9BZE1 423 aaKnown RBP9.02□□□□□ -0.97
CLIP1-213ENST00000540338 WDR61Q9GZS3 305 aaKnown RBP9.02□□□□□ -0.97
CLIP1-213ENST00000540338 COA4Q9NYJ1 87 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 SLC25A10Q9UBX3 287 aaPredicted RBP9.02□□□□□ -0.97
CLIP1-213ENST00000540338 PPIAL4AQ9Y536 164 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 IGLV1-44P01699 117 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 ERHP84090 104 aaKnown RBP9.02□□□□□ -0.97
CLIP1-213ENST00000540338 Q6ZR03 302 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 ZNF525Q8N782 197 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 CADP27708 2225 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 CTXND1A0A1B0GTU2 59 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 A8MXE2 369 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.02□□□□□ -0.97
CLIP1-213ENST00000540338 BCL2P10415 239 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 KIAA0141Q14154 515 aaPredicted RBP9.02□□□□□ -0.97
CLIP1-213ENST00000540338 LRRC75BQ2VPJ9 315 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 CD177Q8N6Q3 437 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 TMEM171Q8WVE6 324 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 LEAP2Q969E1 77 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 UHRF2Q96PU4 802 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 TCEAL7Q9BRU2 100 aa9.02□□□□□ -0.97
CLIP1-213ENST00000540338 PLGLAQ15195 96 aa9.01□□□□□ -0.97
CLIP1-213ENST00000540338 HFEQ30201 348 aa9.01□□□□□ -0.97
CLIP1-213ENST00000540338 Q6ZRM9 215 aa9.01□□□□□ -0.97
CLIP1-213ENST00000540338 FKBP11Q9NYL4 201 aa9.01□□□□□ -0.97
CLIP1-213ENST00000540338 IDI2-AS1Q9NZ38 188 aa9.01□□□□□ -0.97
CLIP1-213ENST00000540338 FAM90A27PA6NNH2 459 aa9.01□□□□□ -0.97
CLIP1-213ENST00000540338 H7BYZ3 331 aa9.01□□□□□ -0.97
CLIP1-213ENST00000540338 SOX15O60248 233 aa9.01□□□□□ -0.97
CLIP1-213ENST00000540338 YPEL1O60688 119 aa9.01□□□□□ -0.97
CLIP1-213ENST00000540338 DLK1P80370 383 aa9.01□□□□□ -0.97
CLIP1-213ENST00000540338 PNRC1Q12796 327 aaPredicted RBP9.01□□□□□ -0.97
CLIP1-213ENST00000540338 YPEL2Q96QA6 119 aa9.01□□□□□ -0.97
CLIP1-213ENST00000540338 GCM1Q9NP62 436 aa9.01□□□□□ -0.97
CLIP1-213ENST00000540338 ZNF729A6NN14 1252 aaPredicted RBP9.01□□□□□ -0.97
CLIP1-213ENST00000540338 CEACAM4O75871 244 aa9.01□□□□□ -0.97
CLIP1-213ENST00000540338 CD1BP29016 333 aa9.01□□□□□ -0.97
CLIP1-213ENST00000540338 SUB1P53999 127 aaKnown RBP eCLIP9.01□□□□□ -0.97
CLIP1-213ENST00000540338 RPL39P5Q59GN2 51 aa9.01□□□□□ -0.97
CLIP1-213ENST00000540338 RBMXL3Q8N7X1 1067 aaKnown RBP9.01□□□□□ -0.97
CLIP1-213ENST00000540338 RPL30P62888 115 aaKnown RBP9□□□□□ -0.97
CLIP1-213ENST00000540338 MORN2Q502X0 79 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 ZNF585BQ52M93 769 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 PRNDQ9UKY0 176 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 TRIOO75962 3097 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 WISP2O76076 250 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 TMEM241Q24JQ0 296 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 SLC35E1Q96K37 410 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 TMEM140Q9NV12 185 aa9□□□□□ -0.97
CLIP1-213ENST00000540338 ESPL1Q14674 2120 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms