RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 SSX2Q16385 188 aa15.28■□□□□ 0.04
TNFRSF1A-213ENST00000540022 FAM120AOSQ5T036 256 aa15.28■□□□□ 0.04
TNFRSF1A-213ENST00000540022 GLDNQ6ZMI3 551 aaPredicted RBP15.28■□□□□ 0.04
TNFRSF1A-213ENST00000540022 TBC1D26Q86UD7 250 aa15.28■□□□□ 0.04
TNFRSF1A-213ENST00000540022 TGIF2LXQ8IUE1 241 aa15.28■□□□□ 0.04
TNFRSF1A-213ENST00000540022 CCDC71LQ8N9Z2 235 aa15.28■□□□□ 0.04
TNFRSF1A-213ENST00000540022 NUP50Q9UKX7 468 aa15.28■□□□□ 0.04
TNFRSF1A-213ENST00000540022 MPPED1O15442 326 aa15.27■□□□□ 0.04
TNFRSF1A-213ENST00000540022 PEX14O75381 377 aa15.27■□□□□ 0.04
TNFRSF1A-213ENST00000540022 GAPDHP04406 335 aaKnown RBP15.27■□□□□ 0.04
TNFRSF1A-213ENST00000540022 S100GP29377 79 aa15.27■□□□□ 0.04
TNFRSF1A-213ENST00000540022 DHODHQ02127 395 aa15.27■□□□□ 0.04
TNFRSF1A-213ENST00000540022 ZNF816Q0VGE8 651 aaPredicted RBP15.27■□□□□ 0.04
TNFRSF1A-213ENST00000540022 ZNF66Q6ZN08 573 aa15.27■□□□□ 0.04
TNFRSF1A-213ENST00000540022 MINDY2Q8NBR6 621 aa15.27■□□□□ 0.04
TNFRSF1A-213ENST00000540022 OR51H1Q8NH63 302 aa15.27■□□□□ 0.04
TNFRSF1A-213ENST00000540022 MALSU1Q96EH3 234 aa15.27■□□□□ 0.04
TNFRSF1A-213ENST00000540022 HSD17B10Q99714 261 aaKnown RBP15.27■□□□□ 0.04
TNFRSF1A-213ENST00000540022 NABP2Q9BQ15 211 aa15.27■□□□□ 0.04
TNFRSF1A-213ENST00000540022 IGHV1-3A0A0C4DH29 117 aa15.27■□□□□ 0.03
TNFRSF1A-213ENST00000540022 A0A0U1RQK1 487 aa15.27■□□□□ 0.03
TNFRSF1A-213ENST00000540022 CRYM-AS1A6NIL9 109 aa15.27■□□□□ 0.03
TNFRSF1A-213ENST00000540022 SUPT4H1P63272 117 aaKnown RBP15.27■□□□□ 0.03
TNFRSF1A-213ENST00000540022 TMEM128Q5BJH2 165 aa15.27■□□□□ 0.03
TNFRSF1A-213ENST00000540022 ZNF383Q8NA42 475 aa15.27■□□□□ 0.03
TNFRSF1A-213ENST00000540022 ALX4Q9H161 411 aaPredicted RBP15.27■□□□□ 0.03
TNFRSF1A-213ENST00000540022 ATRQ13535 2644 aa15.26■□□□□ 0.03
TNFRSF1A-213ENST00000540022 TEX13DA0A0J9YY54 714 aaPredicted RBP15.26■□□□□ 0.03
TNFRSF1A-213ENST00000540022 A0A1W2PPI3 338 aa15.26■□□□□ 0.03
TNFRSF1A-213ENST00000540022 F2RP25116 425 aa15.26■□□□□ 0.03
TNFRSF1A-213ENST00000540022 THBS3P49746 956 aa15.26■□□□□ 0.03
TNFRSF1A-213ENST00000540022 RAG2P55895 527 aa15.26■□□□□ 0.03
TNFRSF1A-213ENST00000540022 TAS2R31P59538 309 aa15.26■□□□□ 0.03
TNFRSF1A-213ENST00000540022 BPIFB3P59826 476 aa15.26■□□□□ 0.03
TNFRSF1A-213ENST00000540022 PPP1R1AQ13522 171 aa15.26■□□□□ 0.03
TNFRSF1A-213ENST00000540022 KCTD9Q7L273 389 aa15.26■□□□□ 0.03
TNFRSF1A-213ENST00000540022 TCTEX1D2Q8WW35 142 aa15.26■□□□□ 0.03
TNFRSF1A-213ENST00000540022 DDB2Q92466 427 aa15.26■□□□□ 0.03
TNFRSF1A-213ENST00000540022 RBMXL1Q96E39 390 aaKnown RBP15.26■□□□□ 0.03
TNFRSF1A-213ENST00000540022 NAA60Q9H7X0 242 aa15.26■□□□□ 0.03
TNFRSF1A-213ENST00000540022 DNHD1Q96M86 4753 aa15.25■□□□□ 0.03
TNFRSF1A-213ENST00000540022 C3orf85A0A1B0GTC6 90 aa15.25■□□□□ 0.03
TNFRSF1A-213ENST00000540022 OOSP1A8MZH6 123 aa15.25■□□□□ 0.03
TNFRSF1A-213ENST00000540022 TXNL1O43396 289 aa15.25■□□□□ 0.03
TNFRSF1A-213ENST00000540022 OR4E1P0C645 316 aa15.25■□□□□ 0.03
TNFRSF1A-213ENST00000540022 BRWD1-AS2P59051 145 aa15.25■□□□□ 0.03
TNFRSF1A-213ENST00000540022 CATR1Q13166 79 aa15.25■□□□□ 0.03
TNFRSF1A-213ENST00000540022 OR2B11Q5JQS5 317 aa15.25■□□□□ 0.03
TNFRSF1A-213ENST00000540022 SGPP2Q8IWX5 399 aa15.25■□□□□ 0.03
TNFRSF1A-213ENST00000540022 BCL6BQ8N143 479 aaPredicted RBP15.25■□□□□ 0.03
TNFRSF1A-213ENST00000540022 TP53RKQ96S44 253 aa15.25■□□□□ 0.03
TNFRSF1A-213ENST00000540022 MS4A7Q9GZW8 240 aaPredicted RBP15.25■□□□□ 0.03
TNFRSF1A-213ENST00000540022 IGHV3-72A0A0B4J1Y9 119 aa15.24■□□□□ 0.03
TNFRSF1A-213ENST00000540022 RNF212BA8MTL3 300 aa15.24■□□□□ 0.03
TNFRSF1A-213ENST00000540022 OR5AC1P0C628 307 aa15.24■□□□□ 0.03
TNFRSF1A-213ENST00000540022 VAMP1P23763 118 aa15.24■□□□□ 0.03
TNFRSF1A-213ENST00000540022 UBE2MP61081 183 aaKnown RBP15.24■□□□□ 0.03
TNFRSF1A-213ENST00000540022 SP6Q3SY56 376 aa15.24■□□□□ 0.03
TNFRSF1A-213ENST00000540022 MOB3BQ86TA1 216 aa15.24■□□□□ 0.03
TNFRSF1A-213ENST00000540022 OR8H3Q8N146 312 aa15.24■□□□□ 0.03
TNFRSF1A-213ENST00000540022 TEX29Q8N6K0 151 aa15.24■□□□□ 0.03
TNFRSF1A-213ENST00000540022 OR5AN1Q8NGI8 311 aa15.24■□□□□ 0.03
TNFRSF1A-213ENST00000540022 C22orf15Q8WYQ4 148 aa15.24■□□□□ 0.03
TNFRSF1A-213ENST00000540022 ADTRPQ96IZ2 230 aa15.24■□□□□ 0.03
TNFRSF1A-213ENST00000540022 SEC22CQ9BRL7 303 aa15.24■□□□□ 0.03
TNFRSF1A-213ENST00000540022 TMEM160Q9NX00 188 aa15.24■□□□□ 0.03
TNFRSF1A-213ENST00000540022 A0A0B4J293 547 aa15.23■□□□□ 0.03
TNFRSF1A-213ENST00000540022 C9orf170A2RU37 121 aa15.23■□□□□ 0.03
TNFRSF1A-213ENST00000540022 H0YJW9 148 aa15.23■□□□□ 0.03
TNFRSF1A-213ENST00000540022 TIMM23O14925 209 aa15.23■□□□□ 0.03
TNFRSF1A-213ENST00000540022 DHFRP00374 187 aa15.23■□□□□ 0.03
TNFRSF1A-213ENST00000540022 IL5P05113 134 aa15.23■□□□□ 0.03
TNFRSF1A-213ENST00000540022 C4orf46Q504U0 113 aa15.23■□□□□ 0.03
TNFRSF1A-213ENST00000540022 CCDC144NLQ6NUI1 221 aa15.23■□□□□ 0.03
TNFRSF1A-213ENST00000540022 C9orf139Q6ZV77 190 aa15.23■□□□□ 0.03
TNFRSF1A-213ENST00000540022 OR52B4Q8NGK2 314 aa15.23■□□□□ 0.03
TNFRSF1A-213ENST00000540022 CFHR4Q92496 578 aa15.23■□□□□ 0.03
TNFRSF1A-213ENST00000540022 GALNT14Q96FL9 552 aa15.23■□□□□ 0.03
TNFRSF1A-213ENST00000540022 H0Y980 276 aa15.22■□□□□ 0.03
TNFRSF1A-213ENST00000540022 SFT2D2O95562 160 aa15.22■□□□□ 0.03
TNFRSF1A-213ENST00000540022 HLA-AP01891 365 aaKnown RBP15.22■□□□□ 0.03
TNFRSF1A-213ENST00000540022 DHRS2Q13268 280 aa15.22■□□□□ 0.03
TNFRSF1A-213ENST00000540022 SLC9A3R2Q15599 337 aa15.22■□□□□ 0.03
TNFRSF1A-213ENST00000540022 LYG2Q86SG7 212 aa15.22■□□□□ 0.03
TNFRSF1A-213ENST00000540022 SPAG16Q8N0X2 631 aa15.22■□□□□ 0.03
TNFRSF1A-213ENST00000540022 GLYATL2Q8WU03 294 aa15.22■□□□□ 0.03
TNFRSF1A-213ENST00000540022 LIN7CQ9NUP9 197 aaKnown RBP15.22■□□□□ 0.03
TNFRSF1A-213ENST00000540022 PRR13Q9NZ81 148 aa15.22■□□□□ 0.03
TNFRSF1A-213ENST00000540022 KCNIP3Q9Y2W7 256 aa15.22■□□□□ 0.03
TNFRSF1A-213ENST00000540022 PRELID3BQ9Y3B1 194 aa15.22■□□□□ 0.03
TNFRSF1A-213ENST00000540022 FAM96BQ9Y3D0 163 aa15.22■□□□□ 0.03
TNFRSF1A-213ENST00000540022 MDFIC2A0A1B0GVS7 189 aa15.22■□□□□ 0.03
TNFRSF1A-213ENST00000540022 RAMP3O60896 148 aa15.22■□□□□ 0.03
TNFRSF1A-213ENST00000540022 FCGR3BO75015 233 aa15.22■□□□□ 0.03
TNFRSF1A-213ENST00000540022 SRP14P37108 136 aaKnown RBP15.22■□□□□ 0.03
TNFRSF1A-213ENST00000540022 HABP2Q14520 560 aaPredicted RBP15.22■□□□□ 0.03
TNFRSF1A-213ENST00000540022 TATDN3Q17R31 274 aa15.22■□□□□ 0.03
TNFRSF1A-213ENST00000540022 ZNF585BQ52M93 769 aa15.22■□□□□ 0.03
TNFRSF1A-213ENST00000540022 CASTOR1Q8WTX7 329 aa15.22■□□□□ 0.03
TNFRSF1A-213ENST00000540022 MEGF9Q9H1U4 602 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms