RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 Q9N2K0 584 aa10.33□□□□□ -0.76
SS18-204ENST00000539244 C8orf4Q9NR00 106 aa10.33□□□□□ -0.76
SS18-204ENST00000539244 ZNF355PQ9NSJ1 428 aa10.33□□□□□ -0.76
SS18-204ENST00000539244 PLCXD1Q9NUJ7 323 aa10.33□□□□□ -0.76
SS18-204ENST00000539244 AK3Q9UIJ7 227 aa10.33□□□□□ -0.76
SS18-204ENST00000539244 HSF4Q9ULV5 492 aa10.33□□□□□ -0.76
SS18-204ENST00000539244 ANKRD34BA5PLL1 514 aa10.32□□□□□ -0.76
SS18-204ENST00000539244 FOXI3A8MTJ6 420 aaPredicted RBP10.32□□□□□ -0.76
SS18-204ENST00000539244 CSN3P07498 182 aa10.32□□□□□ -0.76
SS18-204ENST00000539244 SCTP09683 121 aa10.32□□□□□ -0.76
SS18-204ENST00000539244 MECP2P51608 486 aaKnown RBP10.32□□□□□ -0.76
SS18-204ENST00000539244 SYNJ2BPP57105 145 aa10.32□□□□□ -0.76
SS18-204ENST00000539244 RBM48Q5RL73 367 aaKnown RBP10.32□□□□□ -0.76
SS18-204ENST00000539244 LINC00322Q6ZN03 302 aaPredicted RBP10.32□□□□□ -0.76
SS18-204ENST00000539244 FBLIM1Q8WUP2 373 aa10.32□□□□□ -0.76
SS18-204ENST00000539244 USMG5Q96IX5 58 aa10.32□□□□□ -0.76
SS18-204ENST00000539244 TINAGL1Q9GZM7 467 aaPredicted RBP10.32□□□□□ -0.76
SS18-204ENST00000539244 LPAR5Q9H1C0 372 aa10.32□□□□□ -0.76
SS18-204ENST00000539244 FKBP14Q9NWM8 211 aa10.32□□□□□ -0.76
SS18-204ENST00000539244 PEF1Q9UBV8 284 aaKnown RBP10.32□□□□□ -0.76
SS18-204ENST00000539244 ZNF221Q9UK13 617 aa10.32□□□□□ -0.76
SS18-204ENST00000539244 IGKV1-6A0A0C4DH72 117 aa10.31□□□□□ -0.76
SS18-204ENST00000539244 SOCS1O15524 211 aa10.31□□□□□ -0.76
SS18-204ENST00000539244 OR2A4O95047 310 aa10.31□□□□□ -0.76
SS18-204ENST00000539244 SRMP19623 302 aa10.31□□□□□ -0.76
SS18-204ENST00000539244 LGALS7P47929 136 aa10.31□□□□□ -0.76
SS18-204ENST00000539244 PJVKQ0ZLH3 352 aa10.31□□□□□ -0.76
SS18-204ENST00000539244 DYRK1AQ13627 763 aa10.31□□□□□ -0.76
SS18-204ENST00000539244 AHSA2Q719I0 299 aa10.31□□□□□ -0.76
SS18-204ENST00000539244 DHRSXQ8N5I4 330 aa10.31□□□□□ -0.76
SS18-204ENST00000539244 PACRGLQ8N7B6 248 aa10.31□□□□□ -0.76
SS18-204ENST00000539244 OR6M1Q8NGM8 313 aa10.31□□□□□ -0.76
SS18-204ENST00000539244 OR2K2Q8NGT1 345 aa10.31□□□□□ -0.76
SS18-204ENST00000539244 IL17DQ8TAD2 202 aa10.31□□□□□ -0.76
SS18-204ENST00000539244 URM1Q9BTM9 101 aaKnown RBP10.31□□□□□ -0.76
SS18-204ENST00000539244 TUBA4BQ9H853 241 aa10.31□□□□□ -0.76
SS18-204ENST00000539244 C12orf4Q9NQ89 552 aa10.31□□□□□ -0.76
SS18-204ENST00000539244 SLC35D1Q9NTN3 355 aa10.31□□□□□ -0.76
SS18-204ENST00000539244 ALMS1Q8TCU4 4167 aa10.31□□□□□ -0.76
SS18-204ENST00000539244 SHISA3A0PJX4 238 aa10.3□□□□□ -0.76
SS18-204ENST00000539244 JTBO76095 146 aa10.3□□□□□ -0.76
SS18-204ENST00000539244 CNIH1O95406 144 aa10.3□□□□□ -0.76
SS18-204ENST00000539244 TRBV12-3P01733 135 aa10.3□□□□□ -0.76
SS18-204ENST00000539244 UCHL1P09936 223 aa10.3□□□□□ -0.76
SS18-204ENST00000539244 TMEM50BP56557 158 aa10.3□□□□□ -0.76
SS18-204ENST00000539244 TATDN3Q17R31 274 aa10.3□□□□□ -0.76
SS18-204ENST00000539244 RNLSQ5VYX0 342 aa10.3□□□□□ -0.76
SS18-204ENST00000539244 C8orf59Q8N0T1 100 aaPredicted RBP10.3□□□□□ -0.76
SS18-204ENST00000539244 TMED9Q9BVK6 235 aa10.3□□□□□ -0.76
SS18-204ENST00000539244 HIPK2Q9H2X6 1198 aa10.3□□□□□ -0.76
SS18-204ENST00000539244 RDH8Q9NYR8 311 aa10.3□□□□□ -0.76
SS18-204ENST00000539244 ADAM30Q9UKF2 790 aa10.3□□□□□ -0.76
SS18-204ENST00000539244 IZUMO1RA6ND01 250 aa10.29□□□□□ -0.76
SS18-204ENST00000539244 M0R1X1 148 aa10.29□□□□□ -0.76
SS18-204ENST00000539244 GNAO1P09471 354 aa10.29□□□□□ -0.76
SS18-204ENST00000539244 SERPINB10P48595 397 aa10.29□□□□□ -0.76
SS18-204ENST00000539244 TAGLNQ01995 201 aaKnown RBP10.29□□□□□ -0.76
SS18-204ENST00000539244 MRGPRG-AS1Q2M3A8 158 aa10.29□□□□□ -0.76
SS18-204ENST00000539244 RPEL1Q2QD12 228 aa10.29□□□□□ -0.76
SS18-204ENST00000539244 HSD17B12Q53GQ0 312 aa10.29□□□□□ -0.76
SS18-204ENST00000539244 TMEM177Q53S58 311 aa10.29□□□□□ -0.76
SS18-204ENST00000539244 LAX1Q8IWV1 398 aa10.29□□□□□ -0.76
SS18-204ENST00000539244 BVESQ8NE79 360 aa10.29□□□□□ -0.76
SS18-204ENST00000539244 HARBI1Q96MB7 349 aa10.29□□□□□ -0.76
SS18-204ENST00000539244 CEPT1Q9Y6K0 416 aa10.29□□□□□ -0.76
SS18-204ENST00000539244 PLECQ15149 4684 aaKnown RBP10.28□□□□□ -0.76
SS18-204ENST00000539244 TRDCB7Z8K6 153 aa10.28□□□□□ -0.76
SS18-204ENST00000539244 SLC17A2O00624 439 aa10.28□□□□□ -0.76
SS18-204ENST00000539244 AIREO43918 545 aa10.28□□□□□ -0.76
SS18-204ENST00000539244 RBMXL2O75526 392 aaKnown RBP10.28□□□□□ -0.76
SS18-204ENST00000539244 DEFA5Q01523 94 aa10.28□□□□□ -0.76
SS18-204ENST00000539244 CEACAM19Q7Z692 300 aa10.28□□□□□ -0.76
SS18-204ENST00000539244 ADAD2Q8NCV1 583 aaKnown RBP10.28□□□□□ -0.76
SS18-204ENST00000539244 OR4A4PQ8NGN8 299 aa10.28□□□□□ -0.76
SS18-204ENST00000539244 SNAPC3Q92966 411 aa10.28□□□□□ -0.76
SS18-204ENST00000539244 ARHGAP5-AS1Q96IT6 56 aa10.28□□□□□ -0.76
SS18-204ENST00000539244 GFI1Q99684 422 aa10.28□□□□□ -0.76
SS18-204ENST00000539244 CMSS1Q9BQ75 279 aaKnown RBP10.28□□□□□ -0.76
SS18-204ENST00000539244 MND1Q9BWT6 205 aa10.28□□□□□ -0.76
SS18-204ENST00000539244 PECRQ9BY49 303 aa10.28□□□□□ -0.76
SS18-204ENST00000539244 SDHAF2Q9NX18 166 aa10.28□□□□□ -0.76
SS18-204ENST00000539244 PEMTQ9UBM1 199 aa10.28□□□□□ -0.76
SS18-204ENST00000539244 LSM2Q9Y333 95 aaKnown RBP10.28□□□□□ -0.76
SS18-204ENST00000539244 SRRM4A7MD48 611 aaKnown RBP10.27□□□□□ -0.77
SS18-204ENST00000539244 DIRAS3O95661 229 aa10.27□□□□□ -0.77
SS18-204ENST00000539244 CDK1P06493 297 aa10.27□□□□□ -0.77
SS18-204ENST00000539244 PLAC9Q5JTB6 97 aa10.27□□□□□ -0.77
SS18-204ENST00000539244 BPIFB6Q8NFQ5 453 aa10.27□□□□□ -0.77
SS18-204ENST00000539244 CABLES2Q9BTV7 478 aa10.27□□□□□ -0.77
SS18-204ENST00000539244 OR2D2Q9H210 308 aa10.27□□□□□ -0.77
SS18-204ENST00000539244 RETNQ9HD89 108 aa10.27□□□□□ -0.77
SS18-204ENST00000539244 COA4Q9NYJ1 87 aa10.27□□□□□ -0.77
SS18-204ENST00000539244 TRBV9A0A0B4J1U6 114 aa10.26□□□□□ -0.77
SS18-204ENST00000539244 A0A0B4J203 849 aa10.26□□□□□ -0.77
SS18-204ENST00000539244 FAM223BA6NKX1 122 aa10.26□□□□□ -0.77
SS18-204ENST00000539244 BMPR1BO00238 502 aa10.26□□□□□ -0.77
SS18-204ENST00000539244 SHOXO15266 292 aa10.26□□□□□ -0.77
SS18-204ENST00000539244 FABP7O15540 132 aa10.26□□□□□ -0.77
SS18-204ENST00000539244 OR9G9P0C7N8 305 aa10.26□□□□□ -0.77
SS18-204ENST00000539244 RRASP10301 218 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms