RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 ZNF230Q9UIE0 474 aaPredicted RBP9.03□□□□□ -0.96
RTN3-209ENST00000538995 ETV7Q9Y603 341 aa9.03□□□□□ -0.96
RTN3-209ENST00000538995 A0A0A6YYH2 397 aa9.02□□□□□ -0.97
RTN3-209ENST00000538995 A6NJ64 397 aa9.02□□□□□ -0.97
RTN3-209ENST00000538995 G3V318 75 aa9.02□□□□□ -0.97
RTN3-209ENST00000538995 CTXN2P0C2S0 81 aa9.02□□□□□ -0.97
RTN3-209ENST00000538995 OR8U9P0C7N5 309 aa9.02□□□□□ -0.97
RTN3-209ENST00000538995 SNRPBP14678 240 aaKnown RBP9.02□□□□□ -0.97
RTN3-209ENST00000538995 CD36P16671 472 aa9.02□□□□□ -0.97
RTN3-209ENST00000538995 LGALS7P47929 136 aa9.02□□□□□ -0.97
RTN3-209ENST00000538995 TMEM267Q0VDI3 215 aaPredicted RBP9.02□□□□□ -0.97
RTN3-209ENST00000538995 CBX3Q13185 183 aa9.02□□□□□ -0.97
RTN3-209ENST00000538995 PSG5Q15238 335 aa9.02□□□□□ -0.97
RTN3-209ENST00000538995 PYHIN1Q6K0P9 492 aa9.02□□□□□ -0.97
RTN3-209ENST00000538995 ZNF562Q6V9R5 426 aa9.02□□□□□ -0.97
RTN3-209ENST00000538995 H1FOOQ8IZA3 346 aaPredicted RBP9.02□□□□□ -0.97
RTN3-209ENST00000538995 DRAXINQ8NBI3 349 aaPredicted RBP9.02□□□□□ -0.97
RTN3-209ENST00000538995 OR5M8Q8NGP6 311 aa9.02□□□□□ -0.97
RTN3-209ENST00000538995 MAFIPQ8WZ33 124 aa9.02□□□□□ -0.97
RTN3-209ENST00000538995 FLYWCH2Q96CP2 140 aaKnown RBP9.02□□□□□ -0.97
RTN3-209ENST00000538995 ADTRPQ96IZ2 230 aa9.02□□□□□ -0.97
RTN3-209ENST00000538995 SLC35D1Q9NTN3 355 aa9.02□□□□□ -0.97
RTN3-209ENST00000538995 SDHAF2Q9NX18 166 aa9.02□□□□□ -0.97
RTN3-209ENST00000538995 RHBDL2Q9NX52 303 aa9.02□□□□□ -0.97
RTN3-209ENST00000538995 METTL1Q9UBP6 276 aaKnown RBP9.02□□□□□ -0.97
RTN3-209ENST00000538995 FOXA2Q9Y261 457 aaPredicted RBP9.02□□□□□ -0.97
RTN3-209ENST00000538995 VSIG4Q9Y279 399 aa9.02□□□□□ -0.97
RTN3-209ENST00000538995 WSB1Q9Y6I7 421 aa9.02□□□□□ -0.97
RTN3-209ENST00000538995 LOC100506127A0A0U1RQW1 187 aa9.01□□□□□ -0.97
RTN3-209ENST00000538995 RRASP10301 218 aa9.01□□□□□ -0.97
RTN3-209ENST00000538995 RPS16P62249 146 aaKnown RBP9.01□□□□□ -0.97
RTN3-209ENST00000538995 KIAA0141Q14154 515 aaPredicted RBP9.01□□□□□ -0.97
RTN3-209ENST00000538995 RTL8BQ17RB0 113 aa9.01□□□□□ -0.97
RTN3-209ENST00000538995 ECSCRQ19T08 205 aa9.01□□□□□ -0.97
RTN3-209ENST00000538995 DEFB136Q30KP8 78 aa9.01□□□□□ -0.97
RTN3-209ENST00000538995 ZNF260Q3ZCT1 412 aa9.01□□□□□ -0.97
RTN3-209ENST00000538995 AKIRIN2Q53H80 203 aa9.01□□□□□ -0.97
RTN3-209ENST00000538995 ZNF491Q8N8L2 437 aa9.01□□□□□ -0.97
RTN3-209ENST00000538995 VCX3AQ9NNX9 186 aa9.01□□□□□ -0.97
RTN3-209ENST00000538995 FBXO7Q9Y3I1 522 aa9.01□□□□□ -0.97
RTN3-209ENST00000538995 RBM7Q9Y580 266 aaKnown RBP9.01□□□□□ -0.97
RTN3-209ENST00000538995 NUBP2Q9Y5Y2 271 aa9.01□□□□□ -0.97
RTN3-209ENST00000538995 IGKV1D-8A0A087WSZ0 117 aa9□□□□□ -0.97
RTN3-209ENST00000538995 A0A087WXM4 84 aa9□□□□□ -0.97
RTN3-209ENST00000538995 TMEM235A6NFC5 223 aa9□□□□□ -0.97
RTN3-209ENST00000538995 I3L521 148 aa9□□□□□ -0.97
RTN3-209ENST00000538995 FCN1O00602 326 aa9□□□□□ -0.97
RTN3-209ENST00000538995 SLC22A5O76082 557 aa9□□□□□ -0.97
RTN3-209ENST00000538995 TNFAIP8O95379 198 aa9□□□□□ -0.97
RTN3-209ENST00000538995 CA2P00918 260 aa9□□□□□ -0.97
RTN3-209ENST00000538995 OR8U8P0C7N1 319 aa9□□□□□ -0.97
RTN3-209ENST00000538995 EGR2P11161 476 aaPredicted RBP9□□□□□ -0.97
RTN3-209ENST00000538995 RAB9AP51151 201 aa9□□□□□ -0.97
RTN3-209ENST00000538995 GNG2P59768 71 aa9□□□□□ -0.97
RTN3-209ENST00000538995 MXD1Q05195 221 aa9□□□□□ -0.97
RTN3-209ENST00000538995 DCTN2Q13561 401 aaKnown RBP9□□□□□ -0.97
RTN3-209ENST00000538995 TMEM177Q53S58 311 aa9□□□□□ -0.97
RTN3-209ENST00000538995 CNIH2Q6PI25 160 aa9□□□□□ -0.97
RTN3-209ENST00000538995 PPP1R27Q86WC6 154 aa9□□□□□ -0.97
RTN3-209ENST00000538995 CROCCP3Q8IVE0 287 aa9□□□□□ -0.97
RTN3-209ENST00000538995 ABHD5Q8WTS1 349 aa9□□□□□ -0.97
RTN3-209ENST00000538995 NUDCD2Q8WVJ2 157 aa9□□□□□ -0.97
RTN3-209ENST00000538995 ARPC1AQ92747 370 aa9□□□□□ -0.97
RTN3-209ENST00000538995 C5orf30Q96GV9 206 aa9□□□□□ -0.97
RTN3-209ENST00000538995 DUX3Q96PT4 197 aa9□□□□□ -0.97
RTN3-209ENST00000538995 KLK15Q9H2R5 256 aa9□□□□□ -0.97
RTN3-209ENST00000538995 ELF5Q9UKW6 265 aaPredicted RBP9□□□□□ -0.97
RTN3-209ENST00000538995 A0A1W2PN81 502 aa8.99□□□□□ -0.97
RTN3-209ENST00000538995 SLC25A17O43808 307 aa8.99□□□□□ -0.97
RTN3-209ENST00000538995 SOX15O60248 233 aa8.99□□□□□ -0.97
RTN3-209ENST00000538995 IGLV2-23P01705 113 aa8.99□□□□□ -0.97
RTN3-209ENST00000538995 CLEC2LP0C7M8 214 aa8.99□□□□□ -0.97
RTN3-209ENST00000538995 CD40LGP29965 261 aa8.99□□□□□ -0.97
RTN3-209ENST00000538995 HOXD3P31249 432 aaPredicted RBP8.99□□□□□ -0.97
RTN3-209ENST00000538995 DUTP33316 252 aaKnown RBP8.99□□□□□ -0.97
RTN3-209ENST00000538995 CHRNA7P36544 502 aa8.99□□□□□ -0.97
RTN3-209ENST00000538995 RAB25P57735 213 aa8.99□□□□□ -0.97
RTN3-209ENST00000538995 LINC00205P59089 165 aa8.99□□□□□ -0.97
RTN3-209ENST00000538995 KRTAP10-11P60412 298 aa8.99□□□□□ -0.97
RTN3-209ENST00000538995 ZNF616Q08AN1 781 aa8.99□□□□□ -0.97
RTN3-209ENST00000538995 ACTBL2Q562R1 376 aa8.99□□□□□ -0.97
RTN3-209ENST00000538995 IDNKQ5T6J7 187 aa8.99□□□□□ -0.97
RTN3-209ENST00000538995 C9orf66Q5T8R8 295 aa8.99□□□□□ -0.97
RTN3-209ENST00000538995 ZNF645Q8N7E2 425 aa8.99□□□□□ -0.97
RTN3-209ENST00000538995 TSPAN14Q8NG11 270 aa8.99□□□□□ -0.97
RTN3-209ENST00000538995 OR11H1Q8NG94 326 aa8.99□□□□□ -0.97
RTN3-209ENST00000538995 DDB2Q92466 427 aa8.99□□□□□ -0.97
RTN3-209ENST00000538995 SLC25A38Q96DW6 304 aa8.99□□□□□ -0.97
RTN3-209ENST00000538995 HARBI1Q96MB7 349 aa8.99□□□□□ -0.97
RTN3-209ENST00000538995 ST6GALNAC5Q9BVH7 336 aa8.99□□□□□ -0.97
RTN3-209ENST00000538995 SLA2Q9H6Q3 261 aa8.99□□□□□ -0.97
RTN3-209ENST00000538995 RNF167Q9H6Y7 350 aa8.99□□□□□ -0.97
RTN3-209ENST00000538995 GNB4Q9HAV0 340 aa8.99□□□□□ -0.97
RTN3-209ENST00000538995 ANXA10Q9UJ72 324 aa8.99□□□□□ -0.97
RTN3-209ENST00000538995 OR2W1Q9Y3N9 320 aa8.99□□□□□ -0.97
RTN3-209ENST00000538995 H3BUA1 57 aa8.98□□□□□ -0.97
RTN3-209ENST00000538995 K7EIL1 84 aa8.98□□□□□ -0.97
RTN3-209ENST00000538995 SSX5O60225 188 aa8.98□□□□□ -0.97
RTN3-209ENST00000538995 RAMP3O60896 148 aa8.98□□□□□ -0.97
RTN3-209ENST00000538995 HLA-DQB1P01920 261 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms