RNA–Protein interactions for RNA: ENST00000538070.1

UBE3B-208, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 5

Gene UBE3B, Length 3,655 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-208ENST00000538070 CLDN14O95500 239 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 IGKV3-15P01624 115 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 GYPAP02724 150 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 IFNA4P05014 189 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 MMP9P14780 707 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 DLK1P80370 383 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 SEM1Q6ZVN7 128 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 LYG1Q8N1E2 194 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 ZNF645Q8N7E2 425 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 DTD1Q8TEA8 209 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 C5orf30Q96GV9 206 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 C12orf57Q99622 126 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 NIPSNAP3BQ9BS92 247 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 CABLES2Q9BTV7 478 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 BIN3Q9NQY0 253 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 ANKHD1Q8IWZ3 2542 aaKnown RBP7.28□□□□□ -1.24
UBE3B-208ENST00000538070 COLCA2A8K830 154 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 RD3LP0DJH9 198 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 HNF1AP20823 631 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 COL8A2P25067 703 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 TNFRSF9Q07011 255 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 TFF3Q07654 80 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 ADIRFQ15847 76 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 SPSB3Q6PJ21 355 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 SSX7Q7RTT5 188 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 SLC16A13Q7RTY0 426 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 HAPLN4Q86UW8 402 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 OR4A16Q8NH70 328 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 GATAD1Q8WUU5 269 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 RND1Q92730 232 aa7.28□□□□□ -1.24
UBE3B-208ENST00000538070 LRBAP50851 2863 aa7.27□□□□□ -1.24
UBE3B-208ENST00000538070 MAP1LC3B2A6NCE7 125 aa7.27□□□□□ -1.25
UBE3B-208ENST00000538070 TMEM210A6NLX4 147 aa7.27□□□□□ -1.25
UBE3B-208ENST00000538070 AHRRA9YTQ3 701 aa7.27□□□□□ -1.25
UBE3B-208ENST00000538070 SCAF4O95104 1147 aaKnown RBP7.27□□□□□ -1.25
UBE3B-208ENST00000538070 MYOD1P15172 320 aa7.27□□□□□ -1.25
UBE3B-208ENST00000538070 NCMAPQ5T1S8 102 aa7.27□□□□□ -1.25
UBE3B-208ENST00000538070 Q6ZS49 121 aa7.27□□□□□ -1.25
UBE3B-208ENST00000538070 OR10P1Q8NGE3 313 aa7.27□□□□□ -1.25
UBE3B-208ENST00000538070 H1FXQ92522 213 aaKnown RBP7.27□□□□□ -1.25
UBE3B-208ENST00000538070 R3HDM4Q96D70 268 aa7.27□□□□□ -1.25
UBE3B-208ENST00000538070 QTRT1Q9BXR0 403 aaKnown RBP7.27□□□□□ -1.25
UBE3B-208ENST00000538070 MAP1LC3BQ9GZQ8 125 aa7.27□□□□□ -1.25
UBE3B-208ENST00000538070 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.27□□□□□ -1.25
UBE3B-208ENST00000538070 SPG11Q96JI7 2443 aa7.27□□□□□ -1.25
UBE3B-208ENST00000538070 CD82P27701 267 aa7.27□□□□□ -1.25
UBE3B-208ENST00000538070 REG1BP48304 166 aa7.27□□□□□ -1.25
UBE3B-208ENST00000538070 TNFAIP6P98066 277 aaPredicted RBP7.27□□□□□ -1.25
UBE3B-208ENST00000538070 C21orf62-AS1Q17RA5 79 aa7.27□□□□□ -1.25
UBE3B-208ENST00000538070 GCSAMLQ5JQS6 135 aa7.27□□□□□ -1.25
UBE3B-208ENST00000538070 FFAR4Q5NUL3 377 aa7.27□□□□□ -1.25
UBE3B-208ENST00000538070 CST9LP1Q5W188 147 aa7.27□□□□□ -1.25
UBE3B-208ENST00000538070 RBMS3Q6XE24 437 aaKnown RBP7.27□□□□□ -1.25
UBE3B-208ENST00000538070 ZNF295-AS1Q8N0V1 137 aa7.27□□□□□ -1.25
UBE3B-208ENST00000538070 ZNF525Q8N782 197 aa7.27□□□□□ -1.25
UBE3B-208ENST00000538070 FAM216BQ8N7L0 139 aa7.27□□□□□ -1.25
UBE3B-208ENST00000538070 ARV1Q9H2C2 271 aa7.27□□□□□ -1.25
UBE3B-208ENST00000538070 PATZ1Q9HBE1 687 aaKnown RBP7.27□□□□□ -1.25
UBE3B-208ENST00000538070 A0A0U1RQK1 487 aa7.26□□□□□ -1.25
UBE3B-208ENST00000538070 TMPRSS2O15393 492 aa7.26□□□□□ -1.25
UBE3B-208ENST00000538070 SLC31A2O15432 143 aa7.26□□□□□ -1.25
UBE3B-208ENST00000538070 NKX6-1P78426 367 aaPredicted RBP7.26□□□□□ -1.25
UBE3B-208ENST00000538070 HMGN3Q15651 99 aa7.26□□□□□ -1.25
UBE3B-208ENST00000538070 EIF2S3LQ2VIR3 472 aaKnown RBP7.26□□□□□ -1.25
UBE3B-208ENST00000538070 ABHD12Q8N2K0 398 aa7.26□□□□□ -1.25
UBE3B-208ENST00000538070 LFNGQ8NES3 379 aa7.26□□□□□ -1.25
UBE3B-208ENST00000538070 CCL17Q92583 94 aa7.26□□□□□ -1.25
UBE3B-208ENST00000538070 ABHD17AQ96GS6 310 aa7.26□□□□□ -1.25
UBE3B-208ENST00000538070 COL12A1Q99715 3063 aa7.26□□□□□ -1.25
UBE3B-208ENST00000538070 IGKV1D-17A0A075B6S4 117 aa7.26□□□□□ -1.25
UBE3B-208ENST00000538070 TRAV3A0A0B4J244 114 aa7.26□□□□□ -1.25
UBE3B-208ENST00000538070 MARCH11A6NNE9 402 aa7.26□□□□□ -1.25
UBE3B-208ENST00000538070 FABP9Q0Z7S8 132 aa7.26□□□□□ -1.25
UBE3B-208ENST00000538070 ICAM4Q14773 271 aa7.26□□□□□ -1.25
UBE3B-208ENST00000538070 GCSAMQ8N6F7 178 aa7.26□□□□□ -1.25
UBE3B-208ENST00000538070 SSMEM1Q8WWF3 244 aa7.26□□□□□ -1.25
UBE3B-208ENST00000538070 POM121Q96HA1 1249 aa7.26□□□□□ -1.25
UBE3B-208ENST00000538070 RCC1LQ96I51 464 aaKnown RBP7.26□□□□□ -1.25
UBE3B-208ENST00000538070 MRPL37Q9BZE1 423 aaKnown RBP7.26□□□□□ -1.25
UBE3B-208ENST00000538070 PLSCR4Q9NRQ2 329 aa7.26□□□□□ -1.25
UBE3B-208ENST00000538070 CYB5BO43169 146 aa7.26□□□□□ -1.25
UBE3B-208ENST00000538070 SNRPCP09234 159 aaKnown RBP7.26□□□□□ -1.25
UBE3B-208ENST00000538070 NDUFA6P56556 154 aa7.26□□□□□ -1.25
UBE3B-208ENST00000538070 ZNF880Q6PDB4 577 aa7.26□□□□□ -1.25
UBE3B-208ENST00000538070 OR4F5Q8NH21 305 aa7.26□□□□□ -1.25
UBE3B-208ENST00000538070 OR4F4Q96R69 305 aa7.26□□□□□ -1.25
UBE3B-208ENST00000538070 FAM215AQ9Y5M1 114 aa7.26□□□□□ -1.25
UBE3B-208ENST00000538070 SLC25A15Q9Y619 301 aa7.26□□□□□ -1.25
UBE3B-208ENST00000538070 DUXBA0A1W2PPF3 345 aa7.25□□□□□ -1.25
UBE3B-208ENST00000538070 LRRC30A6NM36 301 aa7.25□□□□□ -1.25
UBE3B-208ENST00000538070 FAM157AC9JC47 383 aa7.25□□□□□ -1.25
UBE3B-208ENST00000538070 SRP19P09132 144 aaKnown RBP7.25□□□□□ -1.25
UBE3B-208ENST00000538070 RAB5AP20339 215 aa7.25□□□□□ -1.25
UBE3B-208ENST00000538070 CD200P41217 278 aa7.25□□□□□ -1.25
UBE3B-208ENST00000538070 HOXA1P49639 335 aaPredicted RBP7.25□□□□□ -1.25
UBE3B-208ENST00000538070 ERVK-16P61578 105 aa7.25□□□□□ -1.25
UBE3B-208ENST00000538070 P2RY6Q15077 328 aa7.25□□□□□ -1.25
UBE3B-208ENST00000538070 PRR30Q53SZ7 412 aaPredicted RBP7.25□□□□□ -1.25
UBE3B-208ENST00000538070 C10orf91Q5T1B1 145 aa7.25□□□□□ -1.25
UBE3B-208ENST00000538070 SLC35E4Q6ICL7 350 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms