RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 PPP1R3CQ9UQK1 317 aa9.84□□□□□ -0.83
CLIP1-208ENST00000537004 A8MXK9 166 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 WNT2P09544 360 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 TPT1P13693 172 aaKnown RBP9.83□□□□□ -0.84
CLIP1-208ENST00000537004 SSTR5P35346 364 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 EDDM3AQ14507 147 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 FAM74A1Q5RGS3 127 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 PDZD9Q8IXQ8 264 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 OR4D5Q8NGN0 318 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 IL22RA2Q969J5 263 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 DIRC2Q96SL1 478 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 MDFIQ99750 246 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 SPIN2AQ99865 258 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 SPIN2BQ9BPZ2 258 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 ZNF665Q9H7R5 613 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 HIF1ANQ9NWT6 349 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 WNK2Q9Y3S1 2297 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 B4DSR2 109 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 E5RGE8 158 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 ST8SIA3O43173 380 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 ADAM20O43506 726 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 SERPINE2P07093 398 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 VDAC1P21796 283 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 NMSQ5H8A3 153 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 OR52L2PQ8NGH6 319 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 RAB1CQ92928 201 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 MARC2Q969Z3 335 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 C1orf159Q96HA4 380 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 PLEKHA2Q9HB19 425 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 RNF7Q9UBF6 113 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 NSG2Q9Y328 171 aa9.83□□□□□ -0.84
CLIP1-208ENST00000537004 ARHGAP32A7KAX9 2087 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 MGST3O14880 152 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 CD80P33681 288 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 SRSF2Q01130 221 aaKnown RBP9.82□□□□□ -0.84
CLIP1-208ENST00000537004 GNMTQ14749 295 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 FAM201AQ5SY85 155 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 FAM53AQ6NSI3 398 aaPredicted RBP9.82□□□□□ -0.84
CLIP1-208ENST00000537004 TRAT1Q6PIZ9 186 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 BAP18Q8IXM2 172 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 DRAM1Q8N682 238 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 PPP1R35Q8TAP8 253 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 ARL11Q969Q4 196 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 TIMD4Q96H15 378 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 SNX22Q96L94 193 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 DCTN5Q9BTE1 182 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 TOLLIPQ9H0E2 274 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 TMEM160Q9NX00 188 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 RCL1Q9Y2P8 373 aaKnown RBP9.82□□□□□ -0.84
CLIP1-208ENST00000537004 POMT1Q9Y6A1 747 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 DOCK11Q5JSL3 2073 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 MEX3AA1L020 520 aaKnown RBP9.82□□□□□ -0.84
CLIP1-208ENST00000537004 TAAR5O14804 337 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 CYB5R3P00387 301 aaPredicted RBP9.82□□□□□ -0.84
CLIP1-208ENST00000537004 IGHV2-5P01817 119 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 MSMBP08118 114 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 FAM157CP0CG43 387 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 TNFRSF1AP19438 455 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 PPP1CCP36873 323 aaKnown RBP9.82□□□□□ -0.84
CLIP1-208ENST00000537004 ZNRF1Q8ND25 227 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 ERGIC1Q969X5 290 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 OR2D2Q9H210 308 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 OR2S2Q9NQN1 319 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 PFDN2Q9UHV9 154 aa9.82□□□□□ -0.84
CLIP1-208ENST00000537004 PIGBOS1A0A0B4J2F0 54 aa9.81□□□□□ -0.84
CLIP1-208ENST00000537004 ODAMA1E959 279 aa9.81□□□□□ -0.84
CLIP1-208ENST00000537004 C15orf65H3BRN8 121 aa9.81□□□□□ -0.84
CLIP1-208ENST00000537004 K7N7A8 449 aa9.81□□□□□ -0.84
CLIP1-208ENST00000537004 SPINT2O43291 252 aa9.81□□□□□ -0.84
CLIP1-208ENST00000537004 IGHV2-70P01814 119 aa9.81□□□□□ -0.84
CLIP1-208ENST00000537004 SRD5A1P18405 259 aa9.81□□□□□ -0.84
CLIP1-208ENST00000537004 NKX2-1P43699 371 aaPredicted RBP9.81□□□□□ -0.84
CLIP1-208ENST00000537004 FLI1Q01543 452 aaPredicted RBP9.81□□□□□ -0.84
CLIP1-208ENST00000537004 EIF4E3Q8N5X7 224 aaKnown RBP9.81□□□□□ -0.84
CLIP1-208ENST00000537004 ZNF645Q8N7E2 425 aa9.81□□□□□ -0.84
CLIP1-208ENST00000537004 RFESDQ8TAC1 157 aa9.81□□□□□ -0.84
CLIP1-208ENST00000537004 Q8TCH9 128 aa9.81□□□□□ -0.84
CLIP1-208ENST00000537004 TMEM186Q96B77 213 aa9.81□□□□□ -0.84
CLIP1-208ENST00000537004 LIN7CQ9NUP9 197 aaKnown RBP9.81□□□□□ -0.84
CLIP1-208ENST00000537004 RNF150Q9ULK6 438 aa9.81□□□□□ -0.84
CLIP1-208ENST00000537004 PRELID3BQ9Y3B1 194 aa9.81□□□□□ -0.84
CLIP1-208ENST00000537004 TMEM178BH3BS89 294 aa9.8□□□□□ -0.84
CLIP1-208ENST00000537004 FGF2P09038 288 aa9.8□□□□□ -0.84
CLIP1-208ENST00000537004 P2RY1P47900 373 aa9.8□□□□□ -0.84
CLIP1-208ENST00000537004 DVL1P1P54792 670 aaPredicted RBP9.8□□□□□ -0.84
CLIP1-208ENST00000537004 RPL7L1Q6DKI1 246 aaKnown RBP9.8□□□□□ -0.84
CLIP1-208ENST00000537004 HSD17B13Q7Z5P4 300 aaPredicted RBP9.8□□□□□ -0.84
CLIP1-208ENST00000537004 ZNF561Q8N587 486 aa9.8□□□□□ -0.84
CLIP1-208ENST00000537004 DMBX1Q8NFW5 382 aa9.8□□□□□ -0.84
CLIP1-208ENST00000537004 FBXL17Q9UF56 701 aa9.8□□□□□ -0.84
CLIP1-208ENST00000537004 IGHV3-43A0A0B4J1X8 118 aa9.8□□□□□ -0.84
CLIP1-208ENST00000537004 RNF212BA8MTL3 300 aa9.8□□□□□ -0.84
CLIP1-208ENST00000537004 AVPP01185 164 aa9.8□□□□□ -0.84
CLIP1-208ENST00000537004 IGHV3-43DP0DP04 118 aa9.8□□□□□ -0.84
CLIP1-208ENST00000537004 GZMHP20718 246 aa9.8□□□□□ -0.84
CLIP1-208ENST00000537004 ZFP36P26651 326 aaKnown RBP9.8□□□□□ -0.84
CLIP1-208ENST00000537004 LCN2P80188 198 aa9.8□□□□□ -0.84
CLIP1-208ENST00000537004 HTD2P86397 168 aa9.8□□□□□ -0.84
CLIP1-208ENST00000537004 CXorf66Q5JRM2 361 aaPredicted RBP9.8□□□□□ -0.84
CLIP1-208ENST00000537004 GPR157Q5UAW9 335 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms