RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 CREBL2O60519 120 aaPredicted RBP1.17□□□□□ -2.22
CD44-238ENST00000534296 MT-CO2P00403 227 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 IGLV3-27P01718 113 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 IGHV1-69P01742 117 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 HLA-DQB2P05538 268 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 IFNGR2P38484 337 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 CTBP2P56545 445 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 TAS2R30P59541 319 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 RPL26P61254 145 aaKnown RBP1.17□□□□□ -2.22
CD44-238ENST00000534296 FGF12P61328 243 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 FABP5Q01469 135 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 TMEM267Q0VDI3 215 aaPredicted RBP1.17□□□□□ -2.22
CD44-238ENST00000534296 UAP1Q16222 522 aaPredicted RBP1.17□□□□□ -2.22
CD44-238ENST00000534296 BATFQ16520 125 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 PABPC1L2AQ5JQF8 200 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 SPATA31B1PQ5VZV4 182 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 LCN8Q6JVE9 175 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 TNFAIP8L2Q6P589 184 aaPredicted RBP1.17□□□□□ -2.22
CD44-238ENST00000534296 Q6ZRU5 148 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 SLC35E3Q7Z769 313 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 LHFPL1Q86WI0 220 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 OR10D3Q8NH80 312 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 SUN5Q8TC36 379 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 TMA16Q96EY4 203 aaKnown RBP1.17□□□□□ -2.22
CD44-238ENST00000534296 CPNE2Q96FN4 548 aaPredicted RBP1.17□□□□□ -2.22
CD44-238ENST00000534296 KCTD7Q96MP8 289 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 TMEM109Q9BVC6 243 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 UPF3BQ9BZI7 483 aaKnown RBP1.17□□□□□ -2.22
CD44-238ENST00000534296 IMP3Q9NV31 184 aaKnown RBP1.17□□□□□ -2.22
CD44-238ENST00000534296 NKIRAS1Q9NYS0 192 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 RPL26L1Q9UNX3 145 aaKnown RBP1.17□□□□□ -2.22
CD44-238ENST00000534296 MRPS16Q9Y3D3 137 aaKnown RBP1.17□□□□□ -2.22
CD44-238ENST00000534296 MTCH2Q9Y6C9 303 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 CHD6Q8TD26 2715 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 NYNRINQ9P2P1 1898 aaKnown RBP1.17□□□□□ -2.22
CD44-238ENST00000534296 FBN3Q75N90 2809 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 EPG5Q9HCE0 2579 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 NPATQ14207 1427 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 ITPR3Q14573 2671 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 HECTD1Q9ULT8 2610 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 ICE1Q9Y2F5 2266 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 ARRDC5A6NEK1 342 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 OR11H12B2RN74 326 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 AZIN1O14977 448 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 ADAP1O75689 374 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 IL6P05231 212 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 DDTP30046 118 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 MIPP30301 263 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 OR10J1P30954 320 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 RPL27AP46776 148 aaKnown RBP1.16□□□□□ -2.22
CD44-238ENST00000534296 HAAOP46952 286 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 SERPINB10P48595 397 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 RAP1GDS1P52306 607 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 TAS2R20P59543 309 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 UBE2G2P60604 165 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 TMEM258P61165 79 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 RELAQ04206 551 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 AKR1C1Q04828 323 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 MED21Q13503 144 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 FAM229BQ4G0N7 80 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 MESTQ5EB52 335 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 CST9Q5W186 159 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 DRAM2Q6UX65 266 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 NAA40Q86UY6 237 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 LRRC34Q8IZ02 419 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 TMEM251Q8N6I4 163 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 ZNF283Q8N7M2 679 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 OR11H2Q8NH07 326 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 RNASE11Q8TAA1 199 aaKnown RBP1.16□□□□□ -2.22
CD44-238ENST00000534296 DCANP1Q8TF63 244 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 SMIM19Q96E16 107 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 ANKRD36BP1Q96IX9 119 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 ZNF514Q96K75 400 aaPredicted RBP1.16□□□□□ -2.22
CD44-238ENST00000534296 LLPHQ9BRT6 129 aaKnown RBP1.16□□□□□ -2.22
CD44-238ENST00000534296 PECRQ9BY49 303 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 SLC22A4Q9H015 551 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 TMEM222Q9H0R3 208 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 BABAM2Q9NXR7 383 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 C15orf41Q9Y2V0 281 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 TIMM9Q9Y5J7 89 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 OR51B4Q9Y5P0 310 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 PCNTO95613 3336 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 JMJD1CQ15652 2540 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 NLRC5Q86WI3 1866 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 UBR4Q5T4S7 5183 aa1.16□□□□□ -2.22
CD44-238ENST00000534296 DOPEY1Q5JWR5 2465 aa1.15□□□□□ -2.22
CD44-238ENST00000534296 MYO18BQ8IUG5 2567 aa1.15□□□□□ -2.22
CD44-238ENST00000534296 DICER1Q9UPY3 1922 aaKnown RBP1.15□□□□□ -2.22
CD44-238ENST00000534296 TRAV41A0A0B4J266 112 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 C19orf71A6NCJ1 209 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 C11orf86A6NJI1 115 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 GNRH2O43555 120 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 KLRC4O43908 158 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 NDUFB2O95178 105 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 COILP38432 576 aaPredicted RBP1.15□□□□□ -2.23
CD44-238ENST00000534296 SLCO1A2P46721 670 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 GABRA2P47869 451 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 EMP1P54849 157 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 FXYD7P58549 80 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 SNAP25P60880 206 aa1.15□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms