RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110		H7C1C5	153 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110		M0R2Z0	102 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	AGPAT2	O15120	278 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	RER1	O15258	196 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	TAPBP	O15533	448 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	TIMM8A	O60220	97 aa	Predicted RBP	4.65	□□□□□ -1.67
CD44-231	ENST00000531110	FCN3	O75636	299 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	TRAPPC6A	O75865	159 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	OR7C1	O76099	320 aa	Predicted RBP	4.65	□□□□□ -1.67
CD44-231	ENST00000531110	NKX2-2	O95096	273 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	SFT2D2	O95562	160 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	TIMP1	P01033	207 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	IFNW1	P05000	195 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	H1F0	P07305	194 aa	Known RBP	4.65	□□□□□ -1.67
CD44-231	ENST00000531110	SRP19	P09132	144 aa	Known RBP	4.65	□□□□□ -1.67
CD44-231	ENST00000531110	CYBA	P13498	195 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	ATP1B2	P14415	290 aa	Predicted RBP	4.65	□□□□□ -1.67
CD44-231	ENST00000531110	TNFAIP6	P98066	277 aa	Predicted RBP	4.65	□□□□□ -1.67
CD44-231	ENST00000531110	ZNF266	Q14584	549 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	KIR2DS5	Q14953	304 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	OR7A5	Q15622	319 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	LRRC75B	Q2VPJ9	315 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	HLA-B	Q31612	363 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	TP53I3	Q53FA7	332 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	PSMG4	Q5JS54	123 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	FFAR4	Q5NUL3	377 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	ZNF678	Q5SXM1	525 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	HIST2H2BC	Q6DN03	193 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	HIST2H2BD	Q6DRA6	164 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	CBLN3	Q6UW01	205 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	C17orf64	Q86WR6	236 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	HIST2H2AB	Q8IUE6	130 aa	Predicted RBP	4.65	□□□□□ -1.67
CD44-231	ENST00000531110	ZNF547	Q8IVP9	402 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	UMODL1-AS1	Q8N2C9	162 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	GPD1L	Q8N335	351 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	SIGLECL1	Q8N7X8	197 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	CLEC1A	Q8NC01	280 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	SMRP1	Q8NCR6	262 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	ADAD2	Q8NCV1	583 aa	Known RBP	4.65	□□□□□ -1.67
CD44-231	ENST00000531110	OR10G9	Q8NGN4	311 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	OR1L3	Q8NH93	324 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	PLPPR1	Q8TBJ4	325 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	RND1	Q92730	232 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	FGF11	Q92914	225 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	SDSL	Q96GA7	329 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	DUX3	Q96PT4	197 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	SPIN2A	Q99865	258 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	SPIN2B	Q9BPZ2	258 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	EIF5A2	Q9GZV4	153 aa	Known RBP	4.65	□□□□□ -1.67
CD44-231	ENST00000531110	MAP1LC3A	Q9H492	121 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	POMK	Q9H5K3	350 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	ANXA10	Q9UJ72	324 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	FOXA2	Q9Y261	457 aa	Predicted RBP	4.65	□□□□□ -1.67
CD44-231	ENST00000531110	LOXL2	Q9Y4K0	774 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	NEUROG3	Q9Y4Z2	214 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	UBR2	Q8IWV8	1755 aa		4.65	□□□□□ -1.67
CD44-231	ENST00000531110	MYO18A	Q92614	2054 aa	Known RBP	4.65	□□□□□ -1.67
CD44-231	ENST00000531110	RLF	Q13129	1914 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	MYLK	Q15746	1914 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	TRAV9-2	A0A087WT02	112 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	TRBV9	A0A0B4J1U6	114 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110		A0A1W2PR77	199 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110		A0A1W2PRF3	423 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110		A0A1W2PRM7	423 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110		A0A1W2PS18	150 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	C7orf71	A4D174	169 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	RBFOX3	A6NFN3	312 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	CASTOR2	A6NHX0	329 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110		A8MT66	165 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	TMEM262	E9PQX1	116 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	ANKHD1-EIF4EBP3	H7C0V5	636 aa	Predicted RBP	4.64	□□□□□ -1.67
CD44-231	ENST00000531110	GEMIN2	O14893	280 aa	Known RBP	4.64	□□□□□ -1.67
CD44-231	ENST00000531110	SYNGR1	O43759	233 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	LDB3	O75112	727 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	ZNF253	O75346	499 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	MPZL1	O95297	269 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	CYB5A	P00167	134 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	TNF	P01375	233 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	OR9G9	P0C7N8	305 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	ZNF286B	P0CG31	522 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	FAM106CP	P0CH98	169 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	CT45A6	P0DMU7	189 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	CT45A5	P0DMU8	189 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	CT45A7	P0DMV0	189 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	ORM2	P19652	201 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	PMCH	P20382	165 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	CRYBB3	P26998	211 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	CD34	P28906	385 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	TSFM	P43897	325 aa	Known RBP	4.64	□□□□□ -1.67
CD44-231	ENST00000531110	MTCP1	P56278	107 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	SMIM11A	P58511	58 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	DCAF4L1	Q3SXM0	396 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	ZNF672	Q499Z4	452 aa	Predicted RBP	4.64	□□□□□ -1.67
CD44-231	ENST00000531110	FAM106A	Q4KMX7	169 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	CT45A1	Q5HYN5	189 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	VAX1	Q5SQQ9	334 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	GLYATL3	Q5SZD4	288 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	BVES-AS1	Q5T3Y7	98 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	LCN10	Q6JVE6	187 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	PLXDC2	Q6UX71	529 aa		4.64	□□□□□ -1.67

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