RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 CHST1O43916 411 aa15.53■□□□□ 0.08
VPS28-207ENST00000526977 SSSCA1O60232 199 aa15.53■□□□□ 0.08
VPS28-207ENST00000526977 PVALBP20472 110 aaPredicted RBP15.53■□□□□ 0.08
VPS28-207ENST00000526977 LPAR6P43657 344 aa15.53■□□□□ 0.08
VPS28-207ENST00000526977 ATP5J2P56134 94 aa15.53■□□□□ 0.08
VPS28-207ENST00000526977 LOXL3P58215 753 aa15.53■□□□□ 0.08
VPS28-207ENST00000526977 BRWD1-AS2P59051 145 aa15.53■□□□□ 0.08
VPS28-207ENST00000526977 ZNF525Q8N782 197 aa15.53■□□□□ 0.08
VPS28-207ENST00000526977 OR8B3Q8NGG8 313 aa15.53■□□□□ 0.08
VPS28-207ENST00000526977 NEIL1Q96FI4 390 aaPredicted RBP15.53■□□□□ 0.08
VPS28-207ENST00000526977 OR8B2Q96RD0 313 aa15.53■□□□□ 0.08
VPS28-207ENST00000526977 YPEL1O60688 119 aa15.53■□□□□ 0.08
VPS28-207ENST00000526977 NXPH3O95157 252 aa15.53■□□□□ 0.08
VPS28-207ENST00000526977 TMEM50AO95807 157 aa15.53■□□□□ 0.08
VPS28-207ENST00000526977 RPL31P62899 125 aaKnown RBP15.53■□□□□ 0.08
VPS28-207ENST00000526977 C17orf58Q2M2W7 97 aa15.53■□□□□ 0.08
VPS28-207ENST00000526977 BTNL3Q6UXE8 466 aa15.53■□□□□ 0.08
VPS28-207ENST00000526977 RNASE11Q8TAA1 199 aaKnown RBP15.53■□□□□ 0.08
VPS28-207ENST00000526977 RNF141Q8WVD5 230 aa15.53■□□□□ 0.08
VPS28-207ENST00000526977 YPEL2Q96QA6 119 aa15.53■□□□□ 0.08
VPS28-207ENST00000526977 CALYQ9NYX4 217 aa15.53■□□□□ 0.08
VPS28-207ENST00000526977 GNG12Q9UBI6 72 aa15.53■□□□□ 0.08
VPS28-207ENST00000526977 JPT1Q9UK76 154 aa15.53■□□□□ 0.08
VPS28-207ENST00000526977 LINC00312Q9Y6C7 94 aa15.53■□□□□ 0.08
VPS28-207ENST00000526977 CRYBG3Q68DQ2 2970 aa15.52■□□□□ 0.08
VPS28-207ENST00000526977 RAMP3O60896 148 aa15.52■□□□□ 0.08
VPS28-207ENST00000526977 FCN3O75636 299 aa15.52■□□□□ 0.08
VPS28-207ENST00000526977 MMP9P14780 707 aa15.52■□□□□ 0.08
VPS28-207ENST00000526977 ZNF841Q6ZN19 808 aa15.52■□□□□ 0.08
VPS28-207ENST00000526977 FGFRL1Q8N441 504 aa15.52■□□□□ 0.08
VPS28-207ENST00000526977 UBAC2Q8NBM4 344 aa15.52■□□□□ 0.08
VPS28-207ENST00000526977 LRRC20Q8TCA0 184 aa15.52■□□□□ 0.08
VPS28-207ENST00000526977 PATZ1Q9HBE1 687 aaKnown RBP15.52■□□□□ 0.08
VPS28-207ENST00000526977 CACNG5Q9UF02 275 aa15.52■□□□□ 0.08
VPS28-207ENST00000526977 NDUFS8O00217 210 aa15.51■□□□□ 0.07
VPS28-207ENST00000526977 OMGP23515 440 aa15.51■□□□□ 0.07
VPS28-207ENST00000526977 PAX9P55771 341 aa15.51■□□□□ 0.07
VPS28-207ENST00000526977 VAMP2P63027 116 aa15.51■□□□□ 0.07
VPS28-207ENST00000526977 EWSR1Q01844 656 aaKnown RBP eCLIP15.51■□□□□ 0.07
VPS28-207ENST00000526977 EDARADDQ8WWZ3 215 aa15.51■□□□□ 0.07
VPS28-207ENST00000526977 H1FXQ92522 213 aaKnown RBP15.51■□□□□ 0.07
VPS28-207ENST00000526977 NRGNQ92686 78 aa15.51■□□□□ 0.07
VPS28-207ENST00000526977 LINC00052Q96N35 136 aa15.51■□□□□ 0.07
VPS28-207ENST00000526977 ARV1Q9H2C2 271 aa15.51■□□□□ 0.07
VPS28-207ENST00000526977 LYRM2Q9NU23 88 aaPredicted RBP15.51■□□□□ 0.07
VPS28-207ENST00000526977 TAS2R3Q9NYW6 316 aa15.51■□□□□ 0.07
VPS28-207ENST00000526977 DOPEY2Q9Y3R5 2298 aa15.51■□□□□ 0.07
VPS28-207ENST00000526977 TRBV23-1A0A0A0MS06 115 aa15.51■□□□□ 0.07
VPS28-207ENST00000526977 KBTBD11-OT1A0A1B0GTJ5 212 aa15.51■□□□□ 0.07
VPS28-207ENST00000526977 IGSF23A1L1A6 192 aa15.51■□□□□ 0.07
VPS28-207ENST00000526977 ZNF729A6NN14 1252 aaPredicted RBP15.51■□□□□ 0.07
VPS28-207ENST00000526977 C17orf98A8MV24 154 aa15.51■□□□□ 0.07
VPS28-207ENST00000526977 CAV2P51636 162 aa15.51■□□□□ 0.07
VPS28-207ENST00000526977 AKR1C2P52895 323 aa15.51■□□□□ 0.07
VPS28-207ENST00000526977 LINC00205P59089 165 aa15.51■□□□□ 0.07
VPS28-207ENST00000526977 EIF5AL1Q6IS14 154 aaKnown RBP15.51■□□□□ 0.07
VPS28-207ENST00000526977 ZNF66Q6ZN08 573 aa15.51■□□□□ 0.07
VPS28-207ENST00000526977 CLN8Q9UBY8 286 aa15.51■□□□□ 0.07
VPS28-207ENST00000526977 SESN1Q9Y6P5 492 aa15.51■□□□□ 0.07
VPS28-207ENST00000526977 PROP1O75360 226 aa15.5■□□□□ 0.07
VPS28-207ENST00000526977 ZP3P21754 424 aa15.5■□□□□ 0.07
VPS28-207ENST00000526977 ZNF134P52741 427 aa15.5■□□□□ 0.07
VPS28-207ENST00000526977 CATR1Q13166 79 aa15.5■□□□□ 0.07
VPS28-207ENST00000526977 OR2B11Q5JQS5 317 aa15.5■□□□□ 0.07
VPS28-207ENST00000526977 ODF3L1Q8IXM7 274 aa15.5■□□□□ 0.07
VPS28-207ENST00000526977 TMEM252Q8N6L7 170 aa15.5■□□□□ 0.07
VPS28-207ENST00000526977 TCTEX1D2Q8WW35 142 aa15.5■□□□□ 0.07
VPS28-207ENST00000526977 LINC00574Q9H8X3 128 aa15.5■□□□□ 0.07
VPS28-207ENST00000526977 C19orf12Q9NSK7 152 aa15.5■□□□□ 0.07
VPS28-207ENST00000526977 PLA2G2EQ9NZK7 142 aa15.5■□□□□ 0.07
VPS28-207ENST00000526977 WRBO00258 174 aa15.5■□□□□ 0.07
VPS28-207ENST00000526977 Q3ZCU0 254 aa15.5■□□□□ 0.07
VPS28-207ENST00000526977 WDR25Q64LD2 544 aaPredicted RBP15.5■□□□□ 0.07
VPS28-207ENST00000526977 SPAG16Q8N0X2 631 aa15.5■□□□□ 0.07
VPS28-207ENST00000526977 FAM168AQ92567 244 aa15.5■□□□□ 0.07
VPS28-207ENST00000526977 HSD17B10Q99714 261 aaKnown RBP15.5■□□□□ 0.07
VPS28-207ENST00000526977 GAL3ST2Q9H3Q3 398 aa15.5■□□□□ 0.07
VPS28-207ENST00000526977 LINC00473A8K010 186 aa15.49■□□□□ 0.07
VPS28-207ENST00000526977 FBXO24O75426 580 aa15.49■□□□□ 0.07
VPS28-207ENST00000526977 DSCR9P59020 149 aa15.49■□□□□ 0.07
VPS28-207ENST00000526977 ZNF816Q0VGE8 651 aaPredicted RBP15.49■□□□□ 0.07
VPS28-207ENST00000526977 TMEM30BQ3MIR4 351 aa15.49■□□□□ 0.07
VPS28-207ENST00000526977 UTF1Q5T230 341 aa15.49■□□□□ 0.07
VPS28-207ENST00000526977 TMEM200BQ69YZ2 307 aa15.49■□□□□ 0.07
VPS28-207ENST00000526977 CLEC2AQ6UVW9 174 aa15.49■□□□□ 0.07
VPS28-207ENST00000526977 TCF23Q7RTU1 214 aa15.49■□□□□ 0.07
VPS28-207ENST00000526977 TCTEX1D1Q8N7M0 179 aa15.49■□□□□ 0.07
VPS28-207ENST00000526977 OR1S2Q8NGQ3 325 aa15.49■□□□□ 0.07
VPS28-207ENST00000526977 BPESC1Q9GZL8 116 aa15.49■□□□□ 0.07
VPS28-207ENST00000526977 SLC25A31Q9H0C2 315 aa15.49■□□□□ 0.07
VPS28-207ENST00000526977 FAM212BQ9NTI7 297 aaPredicted RBP15.49■□□□□ 0.07
VPS28-207ENST00000526977 MMP24Q9Y5R2 645 aa15.49■□□□□ 0.07
VPS28-207ENST00000526977 BORCS7-ASMTA0A0B4J1R7 106 aa15.48■□□□□ 0.07
VPS28-207ENST00000526977 IGHV3-7P01780 117 aa15.48■□□□□ 0.07
VPS28-207ENST00000526977 GPR12P47775 334 aa15.48■□□□□ 0.07
VPS28-207ENST00000526977 KRTAP10-9P60411 292 aa15.48■□□□□ 0.07
VPS28-207ENST00000526977 FAM216AQ8WUB2 273 aa15.48■□□□□ 0.07
VPS28-207ENST00000526977 PERPQ96FX8 193 aa15.48■□□□□ 0.07
VPS28-207ENST00000526977 PIMREGQ9BSJ6 248 aa15.48■□□□□ 0.07
VPS28-207ENST00000526977 SPG11Q96JI7 2443 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms