RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 RAB13P51153 203 aa12.32□□□□□ -0.44
LSM1-203ENST00000520755 RPL30P62888 115 aaKnown RBP12.32□□□□□ -0.44
LSM1-203ENST00000520755 UBA52P62987 128 aaKnown RBP12.32□□□□□ -0.44
LSM1-203ENST00000520755 FBLN7Q53RD9 439 aa12.32□□□□□ -0.44
LSM1-203ENST00000520755 DRAXINQ8NBI3 349 aaPredicted RBP12.32□□□□□ -0.44
LSM1-203ENST00000520755 ADAD2Q8NCV1 583 aaKnown RBP12.32□□□□□ -0.44
LSM1-203ENST00000520755 CFHR4Q92496 578 aa12.32□□□□□ -0.44
LSM1-203ENST00000520755 NABP2Q9BQ15 211 aa12.32□□□□□ -0.44
LSM1-203ENST00000520755 SLC25A21Q9BQT8 299 aaPredicted RBP12.32□□□□□ -0.44
LSM1-203ENST00000520755 C20orf85Q9H1P6 137 aa12.32□□□□□ -0.44
LSM1-203ENST00000520755 IGHV1-3A0A0C4DH29 117 aa12.31□□□□□ -0.44
LSM1-203ENST00000520755 TRIM77I1YAP6 450 aa12.31□□□□□ -0.44
LSM1-203ENST00000520755 ARPC1BO15143 372 aaKnown RBP12.31□□□□□ -0.44
LSM1-203ENST00000520755 SLC22A5O76082 557 aa12.31□□□□□ -0.44
LSM1-203ENST00000520755 PTTG1O95997 202 aa12.31□□□□□ -0.44
LSM1-203ENST00000520755 CT45A6P0DMU7 189 aa12.31□□□□□ -0.44
LSM1-203ENST00000520755 CT45A5P0DMU8 189 aa12.31□□□□□ -0.44
LSM1-203ENST00000520755 CT45A7P0DMV0 189 aa12.31□□□□□ -0.44
LSM1-203ENST00000520755 DUTP33316 252 aaKnown RBP12.31□□□□□ -0.44
LSM1-203ENST00000520755 ARHGDIBP52566 201 aa12.31□□□□□ -0.44
LSM1-203ENST00000520755 RND3P61587 244 aa12.31□□□□□ -0.44
LSM1-203ENST00000520755 CCDC144NLQ6NUI1 221 aa12.31□□□□□ -0.44
LSM1-203ENST00000520755 GLDNQ6ZMI3 551 aaPredicted RBP12.31□□□□□ -0.44
LSM1-203ENST00000520755 TGIF2LXQ8IUE1 241 aa12.31□□□□□ -0.44
LSM1-203ENST00000520755 ZNF383Q8NA42 475 aa12.31□□□□□ -0.44
LSM1-203ENST00000520755 DUSP18Q8NEJ0 188 aa12.31□□□□□ -0.44
LSM1-203ENST00000520755 ENKURQ8TC29 256 aa12.31□□□□□ -0.44
LSM1-203ENST00000520755 DDB2Q92466 427 aa12.31□□□□□ -0.44
LSM1-203ENST00000520755 ZNF486Q96H40 463 aaPredicted RBP12.31□□□□□ -0.44
LSM1-203ENST00000520755 AKR1E2Q96JD6 320 aa12.31□□□□□ -0.44
LSM1-203ENST00000520755 GHITMQ9H3K2 345 aa12.31□□□□□ -0.44
LSM1-203ENST00000520755 NUDT15Q9NV35 164 aa12.31□□□□□ -0.44
LSM1-203ENST00000520755 C2CD3Q4AC94 2353 aa12.31□□□□□ -0.44
LSM1-203ENST00000520755 JMJD1CQ15652 2540 aa12.31□□□□□ -0.44
LSM1-203ENST00000520755 TRAV6A0A075B6T7 132 aa12.3□□□□□ -0.44
LSM1-203ENST00000520755 OOSP1A8MZH6 123 aa12.3□□□□□ -0.44
LSM1-203ENST00000520755 PGLYRP1O75594 196 aaPredicted RBP12.3□□□□□ -0.44
LSM1-203ENST00000520755 RLN1P04808 185 aa12.3□□□□□ -0.44
LSM1-203ENST00000520755 PIGPP57054 158 aa12.3□□□□□ -0.44
LSM1-203ENST00000520755 BRWD1-AS2P59051 145 aa12.3□□□□□ -0.44
LSM1-203ENST00000520755 HABP2Q14520 560 aaPredicted RBP12.3□□□□□ -0.44
LSM1-203ENST00000520755 LY6EQ16553 131 aa12.3□□□□□ -0.44
LSM1-203ENST00000520755 LPCAT3Q6P1A2 487 aa12.3□□□□□ -0.44
LSM1-203ENST00000520755 TMEM86BQ8N661 226 aa12.3□□□□□ -0.44
LSM1-203ENST00000520755 ZBTB34Q8NCN2 500 aa12.3□□□□□ -0.44
LSM1-203ENST00000520755 OR5R1Q8NH85 324 aa12.3□□□□□ -0.44
LSM1-203ENST00000520755 ZFAND1Q8TCF1 268 aa12.3□□□□□ -0.44
LSM1-203ENST00000520755 S1PR3Q99500 378 aa12.3□□□□□ -0.44
LSM1-203ENST00000520755 CHIAQ9BZP6 476 aa12.3□□□□□ -0.44
LSM1-203ENST00000520755 POMT1Q9Y6A1 747 aa12.3□□□□□ -0.44
LSM1-203ENST00000520755 IGHV3-72A0A0B4J1Y9 119 aa12.29□□□□□ -0.44
LSM1-203ENST00000520755 VGLL3A8MV65 326 aa12.29□□□□□ -0.44
LSM1-203ENST00000520755 H0YJW9 148 aa12.29□□□□□ -0.44
LSM1-203ENST00000520755 CLDN34H7C241 214 aa12.29□□□□□ -0.44
LSM1-203ENST00000520755 TIMM23O14925 209 aa12.29□□□□□ -0.44
LSM1-203ENST00000520755 TXNL1O43396 289 aa12.29□□□□□ -0.44
LSM1-203ENST00000520755 GAPDHP04406 335 aaKnown RBP12.29□□□□□ -0.44
LSM1-203ENST00000520755 RNASE1P07998 156 aaKnown RBP12.29□□□□□ -0.44
LSM1-203ENST00000520755 VSIG10L2P0DP72 767 aa12.29□□□□□ -0.44
LSM1-203ENST00000520755 CD24P25063 80 aa12.29□□□□□ -0.44
LSM1-203ENST00000520755 AANATQ16613 207 aa12.29□□□□□ -0.44
LSM1-203ENST00000520755 KCTD9Q7L273 389 aa12.29□□□□□ -0.44
LSM1-203ENST00000520755 TMED4Q7Z7H5 227 aa12.29□□□□□ -0.44
LSM1-203ENST00000520755 MOB3BQ86TA1 216 aa12.29□□□□□ -0.44
LSM1-203ENST00000520755 TBC1D26Q86UD7 250 aa12.29□□□□□ -0.44
LSM1-203ENST00000520755 OR8H3Q8N146 312 aa12.29□□□□□ -0.44
LSM1-203ENST00000520755 PIFOQ8TCI5 191 aa12.29□□□□□ -0.44
LSM1-203ENST00000520755 COPZ2Q9P299 210 aa12.29□□□□□ -0.44
LSM1-203ENST00000520755 VPREB3Q9UKI3 123 aa12.29□□□□□ -0.44
LSM1-203ENST00000520755 C14orf166Q9Y224 244 aaKnown RBP12.29□□□□□ -0.44
LSM1-203ENST00000520755 CRYM-AS1A6NIL9 109 aa12.28□□□□□ -0.44
LSM1-203ENST00000520755 ANXA7P20073 488 aaKnown RBP12.28□□□□□ -0.44
LSM1-203ENST00000520755 BRS3P32247 399 aa12.28□□□□□ -0.44
LSM1-203ENST00000520755 THBS3P49746 956 aa12.28□□□□□ -0.44
LSM1-203ENST00000520755 MECP2P51608 486 aaKnown RBP12.28□□□□□ -0.44
LSM1-203ENST00000520755 DYNLT3P51808 116 aa12.28□□□□□ -0.44
LSM1-203ENST00000520755 SUPT4H1P63272 117 aaKnown RBP12.28□□□□□ -0.44
LSM1-203ENST00000520755 OXA1LQ15070 435 aa12.28□□□□□ -0.44
LSM1-203ENST00000520755 RGS21Q2M5E4 152 aa12.28□□□□□ -0.44
LSM1-203ENST00000520755 ABCA11PQ4W5N1 156 aa12.28□□□□□ -0.44
LSM1-203ENST00000520755 OR2B11Q5JQS5 317 aa12.28□□□□□ -0.44
LSM1-203ENST00000520755 ZNF66Q6ZN08 573 aa12.28□□□□□ -0.44
LSM1-203ENST00000520755 CENPSQ8N2Z9 138 aa12.28□□□□□ -0.44
LSM1-203ENST00000520755 OR5AN1Q8NGI8 311 aa12.28□□□□□ -0.44
LSM1-203ENST00000520755 OR51H1Q8NH63 302 aa12.28□□□□□ -0.44
LSM1-203ENST00000520755 CAPSLQ8WWF8 208 aa12.28□□□□□ -0.44
LSM1-203ENST00000520755 HSD17B10Q99714 261 aaKnown RBP12.28□□□□□ -0.44
LSM1-203ENST00000520755 NUBP2Q9Y5Y2 271 aa12.28□□□□□ -0.44
LSM1-203ENST00000520755 MPPED1O15442 326 aa12.27□□□□□ -0.45
LSM1-203ENST00000520755 GPR137BO60478 399 aa12.27□□□□□ -0.45
LSM1-203ENST00000520755 DHODHQ02127 395 aa12.27□□□□□ -0.45
LSM1-203ENST00000520755 CCBE1Q6UXH8 406 aaPredicted RBP12.27□□□□□ -0.45
LSM1-203ENST00000520755 SLC25A42Q86VD7 318 aa12.27□□□□□ -0.45
LSM1-203ENST00000520755 TMEM219Q86XT9 240 aa12.27□□□□□ -0.45
LSM1-203ENST00000520755 CMTM1Q8IZ96 169 aa12.27□□□□□ -0.45
LSM1-203ENST00000520755 TCTEX1D2Q8WW35 142 aa12.27□□□□□ -0.45
LSM1-203ENST00000520755 SCGB3A2Q96PL1 93 aa12.27□□□□□ -0.45
LSM1-203ENST00000520755 TP53RKQ96S44 253 aa12.27□□□□□ -0.45
LSM1-203ENST00000520755 NAA60Q9H7X0 242 aa12.27□□□□□ -0.45
LSM1-203ENST00000520755 TCF19Q9Y242 345 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms