RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 MRAPQ8TCY5 172 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 SECTM1Q8WVN6 248 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 RERGQ96A58 199 aaPredicted RBP4.59□□□□□ -1.67
NUP54-218ENST00000515460 SLAMF6Q96DU3 332 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 DUX5Q96PT3 197 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 OR2A5Q96R48 311 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 NKX3-1Q99801 234 aaPredicted RBP4.59□□□□□ -1.67
NUP54-218ENST00000515460 GINS3Q9BRX5 216 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 ZNF649Q9BS31 505 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 WDR13Q9H1Z4 485 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 C1orf198Q9H425 327 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 FGF20Q9NP95 211 aaPredicted RBP4.59□□□□□ -1.67
NUP54-218ENST00000515460 MCTS1Q9ULC4 181 aaKnown RBP4.59□□□□□ -1.67
NUP54-218ENST00000515460 FUT9Q9Y231 359 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 RCE1Q9Y256 329 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 MRPS28Q9Y2Q9 187 aaKnown RBP4.59□□□□□ -1.67
NUP54-218ENST00000515460 TSSC4Q9Y5U2 329 aaPredicted RBP4.59□□□□□ -1.67
NUP54-218ENST00000515460 NUP210LQ5VU65 1888 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 IGHV3-20A0A0C4DH32 117 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 P2RX6O15547 441 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 KLK8O60259 260 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 DUS4LO95620 317 aaKnown RBP4.58□□□□□ -1.68
NUP54-218ENST00000515460 HAND1O96004 215 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 EIF4EP06730 217 aaKnown RBP4.58□□□□□ -1.68
NUP54-218ENST00000515460 MMP7P09237 267 aaPredicted RBP4.58□□□□□ -1.68
NUP54-218ENST00000515460 CXCL1P09341 107 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 ERGP11308 486 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 ATP6V0CP27449 155 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 SOAT1P35610 550 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 NPBWR2P48146 333 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 RAB10P61026 200 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 PRDX1Q06830 199 aaKnown RBP4.58□□□□□ -1.68
NUP54-218ENST00000515460 ENDOGQ14249 297 aaKnown RBP4.58□□□□□ -1.68
NUP54-218ENST00000515460 GINS1Q14691 196 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 ACKR1Q16570 336 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 HIST3H3Q16695 136 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 SOHLH1Q5JUK2 328 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 Q6ZTC4 211 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 PRSS41Q7RTY9 318 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 NEGR1Q7Z3B1 354 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 ARIH2OSQ8N7S6 290 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 FADS6Q8N9I5 356 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 C5orf17Q8NAS9 161 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 OR5AU1Q8NGC0 362 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 OR4K1Q8NGD4 311 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 OR4D11Q8NGI4 311 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 OR2T27Q8NH04 317 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 NFKBIDQ8NI38 313 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 VN1R17PQ8TDU5 208 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 ZNF418Q8TF45 676 aaPredicted RBP4.58□□□□□ -1.68
NUP54-218ENST00000515460 TMEM170AQ8WVE7 144 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 TWIST2Q8WVJ9 160 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 SEH1LQ96EE3 360 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 MMABQ96EY8 250 aaPredicted RBP4.58□□□□□ -1.68
NUP54-218ENST00000515460 GPA33Q99795 319 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 HES7Q9BYE0 225 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 INPP5EQ9NRR6 644 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 ANKRD10Q9NXR5 420 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 ZNF319Q9P2F9 582 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 ONECUT1Q9UBC0 465 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 SS18L2Q9UHA2 77 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 ERG28Q9UKR5 140 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 UFC1Q9Y3C8 167 aa4.58□□□□□ -1.68
NUP54-218ENST00000515460 MDC1Q14676 2089 aaKnown RBP4.57□□□□□ -1.68
NUP54-218ENST00000515460 LOC100509620A0A075B734 347 aa4.57□□□□□ -1.68
NUP54-218ENST00000515460 IGHV2-26A0A0B4J1V2 119 aa4.57□□□□□ -1.68
NUP54-218ENST00000515460 A0A1B0GU03 582 aa4.57□□□□□ -1.68
NUP54-218ENST00000515460 A0A1W2PR80 420 aa4.57□□□□□ -1.68
NUP54-218ENST00000515460 MBD3L5A6NJ08 208 aaPredicted RBP4.57□□□□□ -1.68
NUP54-218ENST00000515460 A8MT66 165 aa4.57□□□□□ -1.68
NUP54-218ENST00000515460 CLDN34H7C241 214 aa4.57□□□□□ -1.68
NUP54-218ENST00000515460 RFXANKO14593 260 aa4.57□□□□□ -1.68
NUP54-218ENST00000515460 HSD17B6O14756 317 aa4.57□□□□□ -1.68
NUP54-218ENST00000515460 GEMIN2O14893 280 aaKnown RBP4.57□□□□□ -1.68
NUP54-218ENST00000515460 RAB29O14966 203 aa4.57□□□□□ -1.68
NUP54-218ENST00000515460 AGPAT2O15120 278 aa4.57□□□□□ -1.68
NUP54-218ENST00000515460 DNPH1O43598 174 aa4.57□□□□□ -1.68
NUP54-218ENST00000515460 NEURL1O76050 574 aa4.57□□□□□ -1.68
NUP54-218ENST00000515460 CLDN14O95500 239 aa4.57□□□□□ -1.68
NUP54-218ENST00000515460 IGHG3P01860 377 aa4.57□□□□□ -1.68
NUP54-218ENST00000515460 GAPDHP04406 335 aaKnown RBP4.57□□□□□ -1.68
NUP54-218ENST00000515460 ATP1B1P05026 303 aa4.57□□□□□ -1.68
NUP54-218ENST00000515460 CTSDP07339 412 aaPredicted RBP4.57□□□□□ -1.68
NUP54-218ENST00000515460 IGLC1P0CG04 106 aa4.57□□□□□ -1.68
NUP54-218ENST00000515460 PGA4P0DJD7 388 aa4.57□□□□□ -1.68
NUP54-218ENST00000515460 PGA5P0DJD9 388 aa4.57□□□□□ -1.68
NUP54-218ENST00000515460 PSG2P11465 335 aa4.57□□□□□ -1.68
NUP54-218ENST00000515460 FUT3P21217 361 aa4.57□□□□□ -1.68
NUP54-218ENST00000515460 SAT1P21673 171 aa4.57□□□□□ -1.68
NUP54-218ENST00000515460 RPS4Y1P22090 263 aaKnown RBP4.57□□□□□ -1.68
NUP54-218ENST00000515460 NMBRP28336 390 aa4.57□□□□□ -1.68
NUP54-218ENST00000515460 ACVR1BP36896 505 aa4.57□□□□□ -1.68
NUP54-218ENST00000515460 ZFP36L2P47974 494 aaKnown RBP4.57□□□□□ -1.68
NUP54-218ENST00000515460 FAM3BP58499 235 aaPredicted RBP4.57□□□□□ -1.68
NUP54-218ENST00000515460 RPL24P83731 157 aaKnown RBP4.57□□□□□ -1.68
NUP54-218ENST00000515460 CYCSP99999 105 aaKnown RBP4.57□□□□□ -1.68
NUP54-218ENST00000515460 SSBP1Q04837 148 aaKnown RBP4.57□□□□□ -1.68
NUP54-218ENST00000515460 HSD52Q0P140 79 aa4.57□□□□□ -1.68
NUP54-218ENST00000515460 TMEM267Q0VDI3 215 aaPredicted RBP4.57□□□□□ -1.68
NUP54-218ENST00000515460 GNMTQ14749 295 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms