RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 COX7A2P2O60397 106 aa11.28□□□□□ -0.6
TCOF1-213ENST00000514442 TMEM230Q96A57 120 aa11.28□□□□□ -0.6
TCOF1-213ENST00000514442 GAGE10A6NGK3 116 aa11.28□□□□□ -0.6
TCOF1-213ENST00000514442 K7EQM0 130 aa11.28□□□□□ -0.6
TCOF1-213ENST00000514442 K7ESF4 209 aa11.28□□□□□ -0.6
TCOF1-213ENST00000514442 K7N7A8 449 aa11.28□□□□□ -0.6
TCOF1-213ENST00000514442 CDX4O14627 284 aaPredicted RBP11.28□□□□□ -0.6
TCOF1-213ENST00000514442 TRAT1Q6PIZ9 186 aa11.28□□□□□ -0.6
TCOF1-213ENST00000514442 TMEM222Q9H0R3 208 aa11.28□□□□□ -0.6
TCOF1-213ENST00000514442 OR6C3Q9NZP0 311 aa11.28□□□□□ -0.6
TCOF1-213ENST00000514442 EP300Q09472 2414 aaPredicted RBP11.28□□□□□ -0.6
TCOF1-213ENST00000514442 FLVCR1-AS1Q8TAF5 88 aa11.28□□□□□ -0.6
TCOF1-213ENST00000514442 G6PC2Q9NQR9 355 aa11.28□□□□□ -0.6
TCOF1-213ENST00000514442 RNF7Q9UBF6 113 aa11.28□□□□□ -0.6
TCOF1-213ENST00000514442 COL4A6Q14031 1691 aa11.28□□□□□ -0.6
TCOF1-213ENST00000514442 TRAV38-1A0A0B4J264 116 aa11.28□□□□□ -0.6
TCOF1-213ENST00000514442 CELA3AP09093 270 aa11.28□□□□□ -0.6
TCOF1-213ENST00000514442 LINC00271P0C7V0 271 aa11.28□□□□□ -0.6
TCOF1-213ENST00000514442 UBTD1Q9HAC8 227 aa11.28□□□□□ -0.6
TCOF1-213ENST00000514442 BPIFB3P59826 476 aa11.27□□□□□ -0.6
TCOF1-213ENST00000514442 SIGLEC12Q96PQ1 595 aa11.27□□□□□ -0.6
TCOF1-213ENST00000514442 RAB1BQ9H0U4 201 aa11.27□□□□□ -0.6
TCOF1-213ENST00000514442 ZFP30Q9Y2G7 519 aa11.27□□□□□ -0.6
TCOF1-213ENST00000514442 A6NDN8 102 aa11.27□□□□□ -0.61
TCOF1-213ENST00000514442 ACP1P24666 158 aa11.27□□□□□ -0.61
TCOF1-213ENST00000514442 CXorf66Q5JRM2 361 aaPredicted RBP11.27□□□□□ -0.61
TCOF1-213ENST00000514442 CYP2G1PQ6ZSU1 146 aa11.27□□□□□ -0.61
TCOF1-213ENST00000514442 WDYHV1Q96HA8 205 aa11.27□□□□□ -0.61
TCOF1-213ENST00000514442 CHRNA10Q9GZZ6 450 aa11.27□□□□□ -0.61
TCOF1-213ENST00000514442 PRDM13Q9H4Q3 707 aa11.27□□□□□ -0.61
TCOF1-213ENST00000514442 LAMTOR2Q9Y2Q5 125 aa11.27□□□□□ -0.61
TCOF1-213ENST00000514442 YTHDF2Q9Y5A9 579 aaKnown RBP11.27□□□□□ -0.61
TCOF1-213ENST00000514442 VWA8A3KMH1 1905 aa11.27□□□□□ -0.61
TCOF1-213ENST00000514442 A0A0U1RQV5 110 aa11.27□□□□□ -0.61
TCOF1-213ENST00000514442 IGSF23A1L1A6 192 aa11.27□□□□□ -0.61
TCOF1-213ENST00000514442 OOEPA6NGQ2 149 aa11.27□□□□□ -0.61
TCOF1-213ENST00000514442 TFPI2P48307 235 aa11.27□□□□□ -0.61
TCOF1-213ENST00000514442 RBM11P57052 281 aaKnown RBP11.27□□□□□ -0.61
TCOF1-213ENST00000514442 CCL8P80075 99 aa11.27□□□□□ -0.61
TCOF1-213ENST00000514442 MRPS11P82912 194 aaKnown RBP11.27□□□□□ -0.61
TCOF1-213ENST00000514442 C12orf54Q6X4T0 127 aa11.27□□□□□ -0.61
TCOF1-213ENST00000514442 OR10S1Q8NGN2 331 aa11.27□□□□□ -0.61
TCOF1-213ENST00000514442 SNHG12Q9BXW3 62 aa11.27□□□□□ -0.61
TCOF1-213ENST00000514442 IL36GQ9NZH8 169 aa11.27□□□□□ -0.61
TCOF1-213ENST00000514442 CHCHD2Q9Y6H1 151 aaPredicted RBP11.27□□□□□ -0.61
TCOF1-213ENST00000514442 OPRK1P41145 380 aa11.27□□□□□ -0.61
TCOF1-213ENST00000514442 RNF2Q99496 336 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 LPAR2Q9HBW0 351 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 HES4Q9HCC6 221 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 ZNF835Q9Y2P0 537 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 A0A0G2JMM0 328 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 A0A1W2PPB8 328 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 A0A1W2PRS3 328 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 KIR3DP1A8MWS1 328 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 FAM157AC9JC47 383 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 APCSP02743 223 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 RBP4P02753 201 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 MT-ND6P03923 174 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 WNT5AP41221 380 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 UCP2P55851 309 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 CCL20P78556 96 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 BCL2L2Q92843 193 aaPredicted RBP11.26□□□□□ -0.61
TCOF1-213ENST00000514442 ZDHHC16Q969W1 377 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 VOPP1Q96AW1 172 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 WFDC1Q9HC57 220 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 FAM206AQ9NX38 181 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 PRR32B1ATL7 298 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 RPL36A-HNRNPH2H7BZ11 118 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 TNFSF13O75888 250 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 LYL1P12980 280 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 IGFBP3P17936 291 aaPredicted RBP11.26□□□□□ -0.61
TCOF1-213ENST00000514442 NUBP1P53384 320 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 DMRTC2Q8IXT2 367 aaPredicted RBP11.26□□□□□ -0.61
TCOF1-213ENST00000514442 CNOT1A5YKK6 2376 aaKnown RBP11.26□□□□□ -0.61
TCOF1-213ENST00000514442 MAJINQ3KP22 176 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 ZNF826PQ6ZT77 177 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 GBGT1Q8N5D6 347 aa11.26□□□□□ -0.61
TCOF1-213ENST00000514442 TMEM250H0YL14 139 aa11.25□□□□□ -0.61
TCOF1-213ENST00000514442 CSN1S1P47710 185 aa11.25□□□□□ -0.61
TCOF1-213ENST00000514442 SHISA5Q8N114 240 aa11.25□□□□□ -0.61
TCOF1-213ENST00000514442 FDCSPQ8NFU4 85 aa11.25□□□□□ -0.61
TCOF1-213ENST00000514442 IL19Q9UHD0 177 aa11.25□□□□□ -0.61
TCOF1-213ENST00000514442 TEX50A0A1B0GTY4 177 aa11.25□□□□□ -0.61
TCOF1-213ENST00000514442 GAGE1Q13065 139 aa11.25□□□□□ -0.61
TCOF1-213ENST00000514442 RTP5Q14D33 572 aa11.25□□□□□ -0.61
TCOF1-213ENST00000514442 FBLN7Q53RD9 439 aa11.25□□□□□ -0.61
TCOF1-213ENST00000514442 RAB1CQ92928 201 aa11.25□□□□□ -0.61
TCOF1-213ENST00000514442 TMEM106BQ9NUM4 274 aa11.25□□□□□ -0.61
TCOF1-213ENST00000514442 NCOR1O75376 2440 aa11.25□□□□□ -0.61
TCOF1-213ENST00000514442 PRR33A8MZF0 331 aa11.25□□□□□ -0.61
TCOF1-213ENST00000514442 VENTXO95231 258 aa11.25□□□□□ -0.61
TCOF1-213ENST00000514442 TCL1AP56279 114 aa11.25□□□□□ -0.61
TCOF1-213ENST00000514442 TMEM56Q96MV1 263 aa11.25□□□□□ -0.61
TCOF1-213ENST00000514442 ZNF441Q8N8Z8 693 aa11.25□□□□□ -0.61
TCOF1-213ENST00000514442 RNASEH2CQ8TDP1 164 aaKnown RBP11.25□□□□□ -0.61
TCOF1-213ENST00000514442 MRGPRFQ96AM1 343 aa11.25□□□□□ -0.61
TCOF1-213ENST00000514442 ABHD14AQ9BUJ0 271 aa11.25□□□□□ -0.61
TCOF1-213ENST00000514442 GFRA3O60609 400 aa11.24□□□□□ -0.61
TCOF1-213ENST00000514442 LYPD3O95274 346 aa11.24□□□□□ -0.61
TCOF1-213ENST00000514442 CEACAM21Q3KPI0 293 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms