RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ZNF638Q14966 1978 aaKnown RBP3.61□□□□□ -1.83
NUP54-215ENST00000514313 KIF15Q9NS87 1388 aa3.61□□□□□ -1.83
NUP54-215ENST00000514313 TRPM3Q9HCF6 1732 aaPredicted RBP3.61□□□□□ -1.83
NUP54-215ENST00000514313 IGHV3-73A0A0B4J1V6 119 aa3.6□□□□□ -1.83
NUP54-215ENST00000514313 SMIM23A6NLE4 172 aa3.6□□□□□ -1.83
NUP54-215ENST00000514313 E7EQL1 145 aa3.6□□□□□ -1.83
NUP54-215ENST00000514313 HLA-DQB2P05538 268 aa3.6□□□□□ -1.83
NUP54-215ENST00000514313 NPPCP23582 126 aa3.6□□□□□ -1.83
NUP54-215ENST00000514313 CCR7P32248 378 aa3.6□□□□□ -1.83
NUP54-215ENST00000514313 LPAR6P43657 344 aa3.6□□□□□ -1.83
NUP54-215ENST00000514313 RGS21Q2M5E4 152 aa3.6□□□□□ -1.83
NUP54-215ENST00000514313 LRRC75BQ2VPJ9 315 aa3.6□□□□□ -1.83
NUP54-215ENST00000514313 TMEM31Q5JXX7 168 aa3.6□□□□□ -1.83
NUP54-215ENST00000514313 HCP5Q6MZN7 132 aa3.6□□□□□ -1.83
NUP54-215ENST00000514313 FNDC9Q8TBE3 224 aa3.6□□□□□ -1.83
NUP54-215ENST00000514313 SHANK3Q9BYB0 1731 aa3.6□□□□□ -1.83
NUP54-215ENST00000514313 BRD4O60885 1362 aaPredicted RBP3.6□□□□□ -1.83
NUP54-215ENST00000514313 G3V3Q6 166 aa3.59□□□□□ -1.83
NUP54-215ENST00000514313 M0R036 132 aa3.59□□□□□ -1.83
NUP54-215ENST00000514313 SERPINA6P08185 405 aa3.59□□□□□ -1.83
NUP54-215ENST00000514313 CCL3P10147 92 aa3.59□□□□□ -1.83
NUP54-215ENST00000514313 MYL12AP19105 171 aa3.59□□□□□ -1.83
NUP54-215ENST00000514313 SERPINB10P48595 397 aa3.59□□□□□ -1.83
NUP54-215ENST00000514313 NAA20P61599 178 aa3.59□□□□□ -1.83
NUP54-215ENST00000514313 ZNF117Q03924 483 aa3.59□□□□□ -1.83
NUP54-215ENST00000514313 ACSM3Q53FZ2 586 aa3.59□□□□□ -1.83
NUP54-215ENST00000514313 C8orf74Q6P047 294 aa3.59□□□□□ -1.83
NUP54-215ENST00000514313 SFXN4Q6P4A7 337 aa3.59□□□□□ -1.83
NUP54-215ENST00000514313 AMTNQ6UX39 209 aa3.59□□□□□ -1.83
NUP54-215ENST00000514313 HIST2H3AQ71DI3 136 aa3.59□□□□□ -1.83
NUP54-215ENST00000514313 OR8K1Q8NGG5 319 aa3.59□□□□□ -1.83
NUP54-215ENST00000514313 OR5C1Q8NGR4 320 aa3.59□□□□□ -1.83
NUP54-215ENST00000514313 OR4K13Q8NH42 304 aa3.59□□□□□ -1.83
NUP54-215ENST00000514313 ASB17Q8WXJ9 295 aa3.59□□□□□ -1.83
NUP54-215ENST00000514313 SLC35G5Q96KT7 338 aa3.59□□□□□ -1.83
NUP54-215ENST00000514313 AICDAQ9GZX7 198 aa3.59□□□□□ -1.83
NUP54-215ENST00000514313 NACADO15069 1562 aa3.59□□□□□ -1.84
NUP54-215ENST00000514313 CACNA1SQ13698 1873 aa3.58□□□□□ -1.84
NUP54-215ENST00000514313 SLC17A3O00476 420 aa3.58□□□□□ -1.84
NUP54-215ENST00000514313 LGALS3P17931 250 aaKnown RBP3.58□□□□□ -1.84
NUP54-215ENST00000514313 ZNF322Q6U7Q0 402 aaPredicted RBP3.58□□□□□ -1.84
NUP54-215ENST00000514313 PACRGLQ8N7B6 248 aa3.58□□□□□ -1.84
NUP54-215ENST00000514313 C16orf78Q8WTQ4 265 aa3.58□□□□□ -1.84
NUP54-215ENST00000514313 OPTNQ96CV9 577 aa3.58□□□□□ -1.84
NUP54-215ENST00000514313 CAPZA3Q96KX2 299 aa3.58□□□□□ -1.84
NUP54-215ENST00000514313 PLB1Q6P1J6 1458 aa3.58□□□□□ -1.84
NUP54-215ENST00000514313 OBSCNQ5VST9 7968 aa3.58□□□□□ -1.84
NUP54-215ENST00000514313 THSD7AQ9UPZ6 1657 aa3.58□□□□□ -1.84
NUP54-215ENST00000514313 VPS37CA5D8V6 355 aaPredicted RBP3.57□□□□□ -1.84
NUP54-215ENST00000514313 OR6C6A6NF89 314 aa3.57□□□□□ -1.84
NUP54-215ENST00000514313 SDHAF1A6NFY7 115 aa3.57□□□□□ -1.84
NUP54-215ENST00000514313 HIST1H1EP10412 219 aaKnown RBP3.57□□□□□ -1.84
NUP54-215ENST00000514313 CCL1P22362 96 aa3.57□□□□□ -1.84
NUP54-215ENST00000514313 CRHBPP24387 322 aa3.57□□□□□ -1.84
NUP54-215ENST00000514313 PRDX4Q13162 271 aa3.57□□□□□ -1.84
NUP54-215ENST00000514313 UAP1Q16222 522 aaPredicted RBP3.57□□□□□ -1.84
NUP54-215ENST00000514313 CCDC121Q6ZUS5 278 aa3.57□□□□□ -1.84
NUP54-215ENST00000514313 ZNF550Q7Z398 422 aa3.57□□□□□ -1.84
NUP54-215ENST00000514313 DAND5Q8N907 189 aa3.57□□□□□ -1.84
NUP54-215ENST00000514313 OR2T27Q8NH04 317 aa3.57□□□□□ -1.84
NUP54-215ENST00000514313 STACQ99469 402 aa3.57□□□□□ -1.84
NUP54-215ENST00000514313 MND1Q9BWT6 205 aa3.57□□□□□ -1.84
NUP54-215ENST00000514313 OR51I2Q9H344 312 aa3.57□□□□□ -1.84
NUP54-215ENST00000514313 OTOFQ9HC10 1997 aa3.57□□□□□ -1.84
NUP54-215ENST00000514313 NLRC5Q86WI3 1866 aa3.56□□□□□ -1.84
NUP54-215ENST00000514313 TGIF2-C20orf24A0A0A6YYL0 155 aa3.56□□□□□ -1.84
NUP54-215ENST00000514313 LYPLA2O95372 231 aa3.56□□□□□ -1.84
NUP54-215ENST00000514313 APOMO95445 188 aa3.56□□□□□ -1.84
NUP54-215ENST00000514313 CPMP14384 443 aa3.56□□□□□ -1.84
NUP54-215ENST00000514313 RWDD2BP57060 319 aa3.56□□□□□ -1.84
NUP54-215ENST00000514313 BTN3A2P78410 334 aa3.56□□□□□ -1.84
NUP54-215ENST00000514313 HOXC5Q00444 222 aa3.56□□□□□ -1.84
NUP54-215ENST00000514313 EMX1Q04741 257 aaPredicted RBP3.56□□□□□ -1.84
NUP54-215ENST00000514313 PLPPR5Q32ZL2 321 aa3.56□□□□□ -1.84
NUP54-215ENST00000514313 TMEM176BQ3YBM2 270 aaPredicted RBP3.56□□□□□ -1.84
NUP54-215ENST00000514313 PP632Q6XCG6 107 aa3.56□□□□□ -1.84
NUP54-215ENST00000514313 TMPPEQ6ZT21 453 aa3.56□□□□□ -1.84
NUP54-215ENST00000514313 RNASE6Q93091 150 aaKnown RBP3.56□□□□□ -1.84
NUP54-215ENST00000514313 PPP1R14BQ96C90 147 aa3.56□□□□□ -1.84
NUP54-215ENST00000514313 DIRAS2Q96HU8 199 aa3.56□□□□□ -1.84
NUP54-215ENST00000514313 MINOS1-NBL1R4GNA1 71 aa3.56□□□□□ -1.84
NUP54-215ENST00000514313 CHD5Q8TDI0 1954 aa3.56□□□□□ -1.84
NUP54-215ENST00000514313 LTBP4Q8N2S1 1624 aa3.55□□□□□ -1.84
NUP54-215ENST00000514313 C17orf51A8MQB3 221 aa3.55□□□□□ -1.84
NUP54-215ENST00000514313 CD200P41217 278 aa3.55□□□□□ -1.84
NUP54-215ENST00000514313 MAP2K4P45985 399 aa3.55□□□□□ -1.84
NUP54-215ENST00000514313 OR1M1Q8NGA1 313 aa3.55□□□□□ -1.84
NUP54-215ENST00000514313 RPS4Y2Q8TD47 263 aa3.55□□□□□ -1.84
NUP54-215ENST00000514313 C12orf43Q96C57 262 aaKnown RBP3.55□□□□□ -1.84
NUP54-215ENST00000514313 TMA16Q96EY4 203 aaKnown RBP3.55□□□□□ -1.84
NUP54-215ENST00000514313 FKBP14Q9NWM8 211 aa3.55□□□□□ -1.84
NUP54-215ENST00000514313 NAV1Q8NEY1 1877 aa3.54□□□□□ -1.84
NUP54-215ENST00000514313 OR11H12B2RN74 326 aa3.54□□□□□ -1.84
NUP54-215ENST00000514313 KCNK1O00180 336 aa3.54□□□□□ -1.84
NUP54-215ENST00000514313 UBE2L6O14933 153 aa3.54□□□□□ -1.84
NUP54-215ENST00000514313 ZNF73O43830 326 aaPredicted RBP3.54□□□□□ -1.84
NUP54-215ENST00000514313 TNNC2P02585 160 aa3.54□□□□□ -1.84
NUP54-215ENST00000514313 CDKN2CP42773 168 aa3.54□□□□□ -1.84
NUP54-215ENST00000514313 BATFQ16520 125 aa3.54□□□□□ -1.84
NUP54-215ENST00000514313 SYPL2Q5VXT5 272 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms