RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 LGALS4P56470 323 aa10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 RPEL1Q2QD12 228 aa10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 RNASEKQ6P5S7 137 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 Q6ZRM9 215 aa10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 NEGR1Q7Z3B1 354 aa10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 SPATA12Q7Z6I5 190 aa10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 OR2T6Q8NHC8 308 aa10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 RERGQ96A58 199 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 SMIM10Q96HG1 83 aa10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 Q96M66 194 aa10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 RALGAPA1Q6GYQ0 2036 aa10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 SZT2Q5T011 3432 aa10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 KIAA1549LQ6ZVL6 1849 aa10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 E9PLN8 166 aa10.21□□□□□ -0.77
LIMCH1-213ENST00000511496 H0YGG7 62 aa10.21□□□□□ -0.77
LIMCH1-213ENST00000511496 SRD5A2P31213 254 aa10.21□□□□□ -0.77
LIMCH1-213ENST00000511496 PIGYQ3MUY2 71 aa10.21□□□□□ -0.77
LIMCH1-213ENST00000511496 DCAF12Q5T6F0 453 aa10.21□□□□□ -0.77
LIMCH1-213ENST00000511496 OR2K2Q8NGT1 345 aa10.21□□□□□ -0.77
LIMCH1-213ENST00000511496 OR8B2Q96RD0 313 aa10.21□□□□□ -0.77
LIMCH1-213ENST00000511496 SFXN3Q9BWM7 321 aa10.21□□□□□ -0.77
LIMCH1-213ENST00000511496 HS3ST3A1Q9Y663 406 aa10.21□□□□□ -0.77
LIMCH1-213ENST00000511496 CD300LBA8K4G0 201 aa10.21□□□□□ -0.77
LIMCH1-213ENST00000511496 TMPRSS2O15393 492 aa10.21□□□□□ -0.77
LIMCH1-213ENST00000511496 UFSP1Q6NVU6 142 aa10.21□□□□□ -0.77
LIMCH1-213ENST00000511496 DOK3Q7L591 496 aa10.21□□□□□ -0.77
LIMCH1-213ENST00000511496 MED12LQ86YW9 2145 aa10.21□□□□□ -0.78
LIMCH1-213ENST00000511496 THSD7BQ9C0I4 1608 aa10.21□□□□□ -0.78
LIMCH1-213ENST00000511496 GAGE12HA6NDE8 117 aa10.21□□□□□ -0.78
LIMCH1-213ENST00000511496 F5H5K5 113 aa10.21□□□□□ -0.78
LIMCH1-213ENST00000511496 PDE6DO43924 150 aa10.21□□□□□ -0.78
LIMCH1-213ENST00000511496 TNFP01375 233 aa10.21□□□□□ -0.78
LIMCH1-213ENST00000511496 CISD3P0C7P0 127 aa10.21□□□□□ -0.78
LIMCH1-213ENST00000511496 RHOBP62745 196 aa10.21□□□□□ -0.78
LIMCH1-213ENST00000511496 PSG7Q13046 419 aa10.21□□□□□ -0.78
LIMCH1-213ENST00000511496 PRR31Q5SQ13 230 aa10.21□□□□□ -0.78
LIMCH1-213ENST00000511496 WDR5BQ86VZ2 330 aa10.21□□□□□ -0.78
LIMCH1-213ENST00000511496 CA13Q8N1Q1 262 aa10.21□□□□□ -0.78
LIMCH1-213ENST00000511496 NT5CQ8TCD5 201 aa10.21□□□□□ -0.78
LIMCH1-213ENST00000511496 IRF7Q92985 503 aa10.21□□□□□ -0.78
LIMCH1-213ENST00000511496 COX14Q96I36 57 aa10.21□□□□□ -0.78
LIMCH1-213ENST00000511496 JMJD8Q96S16 334 aa10.21□□□□□ -0.78
LIMCH1-213ENST00000511496 VN1R3Q9BXE9 311 aa10.21□□□□□ -0.78
LIMCH1-213ENST00000511496 TIMM8BQ9Y5J9 83 aaPredicted RBP10.21□□□□□ -0.78
LIMCH1-213ENST00000511496 TNRC6AQ8NDV7 1962 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 SCO2A0A1W2PP80 73 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 BMPR1BO00238 502 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 DEGS1O15121 323 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 UTS2O95399 124 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 LINC00869P0C866 280 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 COX5AP20674 150 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 CRIP3Q6Q6R5 217 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 BLNKQ8WV28 456 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 GNB1LQ9BYB4 327 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 NPFFR1Q9GZQ6 430 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 ST20Q9HBF5 79 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 LYRM4Q9HD34 91 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 HILPDAQ9Y5L2 63 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 UNC13CQ8NB66 2214 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 SAA2-SAA4A0A096LPE2 208 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 A0A0G2JMM0 328 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 A0A1W2PPB8 328 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 KIR3DP1A8MWS1 328 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 J3QR06 171 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 RHBDL1O75783 438 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 GP1BBP13224 206 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 DRD1P21728 446 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 CARD17Q5XLA6 110 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 JKAMPQ9P055 326 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 PIGLQ9Y2B2 252 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 TRAV38-1A0A0B4J264 116 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 DXOO77932 396 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 CLDN1O95832 211 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 PRNPP04156 253 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 ZNF16P17020 682 aaPredicted RBP10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 FXYD3Q14802 87 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 CCDC144NLQ6NUI1 221 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 ASCL4Q6XD76 172 aa10.2□□□□□ -0.78
LIMCH1-213ENST00000511496 TMED7-TICAM2A0A0A6YYA0 188 aa10.19□□□□□ -0.78
LIMCH1-213ENST00000511496 IGKV1D-13A0A0B4J2D9 117 aa10.19□□□□□ -0.78
LIMCH1-213ENST00000511496 NEURL1O76050 574 aa10.19□□□□□ -0.78
LIMCH1-213ENST00000511496 IGKV1-13P0DP09 117 aa10.19□□□□□ -0.78
LIMCH1-213ENST00000511496 EN2P19622 333 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-213ENST00000511496 GPR183P32249 361 aa10.19□□□□□ -0.78
LIMCH1-213ENST00000511496 GCSAMLQ5JQS6 135 aa10.19□□□□□ -0.78
LIMCH1-213ENST00000511496 C1orf122Q6ZSJ8 110 aa10.19□□□□□ -0.78
LIMCH1-213ENST00000511496 MRPL21Q7Z2W9 205 aaKnown RBP10.19□□□□□ -0.78
LIMCH1-213ENST00000511496 OR10AG1Q8NH19 301 aa10.19□□□□□ -0.78
LIMCH1-213ENST00000511496 DGAT2Q96PD7 388 aa10.19□□□□□ -0.78
LIMCH1-213ENST00000511496 WNT16Q9UBV4 365 aa10.19□□□□□ -0.78
LIMCH1-213ENST00000511496 ATG2AQ2TAZ0 1938 aa10.19□□□□□ -0.78
LIMCH1-213ENST00000511496 HTR1DP28221 377 aa10.19□□□□□ -0.78
LIMCH1-213ENST00000511496 FOXE3Q13461 319 aa10.19□□□□□ -0.78
LIMCH1-213ENST00000511496 LRRK1Q38SD2 2015 aa10.19□□□□□ -0.78
LIMCH1-213ENST00000511496 OR8B3Q8NGG8 313 aa10.19□□□□□ -0.78
LIMCH1-213ENST00000511496 ZNF479Q96JC4 524 aa10.19□□□□□ -0.78
LIMCH1-213ENST00000511496 MOB1AQ9H8S9 216 aa10.19□□□□□ -0.78
LIMCH1-213ENST00000511496 PTRH2Q9Y3E5 179 aaKnown RBP10.19□□□□□ -0.78
LIMCH1-213ENST00000511496 WNT6Q9Y6F9 365 aa10.19□□□□□ -0.78
LIMCH1-213ENST00000511496 TGFBR3LH3BV60 316 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms