RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 NGFRP08138 427 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 CDKN1AP38936 164 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 REG1BP48304 166 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 KLRD1Q13241 179 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 ZNF146Q15072 292 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 ALKBH6Q3KRA9 238 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 ZNF260Q3ZCT1 412 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 SPANXN1Q5VSR9 72 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 CDCP2Q5VXM1 449 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 RSPO2Q6UXX9 243 aaPredicted RBP3.1□□□□□ -1.91
USP53-205ENST00000509769 SHISA6Q6ZSJ9 500 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 GOLT1AQ6ZVE7 132 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 FAM72BQ86X60 149 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 TP53INP2Q8IXH6 220 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 ORMDL3Q8N138 153 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 FBXL14Q8N1E6 418 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 PTH2Q96A98 100 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 GPR82Q96P67 336 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 GNRHR2Q96P88 292 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 WFDC6Q9BQY6 131 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 UBL5Q9BZL1 73 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 C1RLQ9NZP8 487 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 HIGD1AQ9Y241 93 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 KLF13Q9Y2Y9 288 aaPredicted RBP3.1□□□□□ -1.91
USP53-205ENST00000509769 IDSB3KWA1 339 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 M0R135 149 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 FXYD1O00168 92 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 IL2RAP01589 272 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 IGKCP01834 107 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 PRR35P0CG20 571 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 FAM106CPP0CH98 169 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 C8orf88P0DMB2 117 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 MALP21145 153 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 CTSOP43234 321 aaPredicted RBP3.1□□□□□ -1.91
USP53-205ENST00000509769 RPL32P62910 135 aaKnown RBP3.1□□□□□ -1.91
USP53-205ENST00000509769 MRPS36P82909 103 aaKnown RBP3.1□□□□□ -1.91
USP53-205ENST00000509769 CEACAM21Q3KPI0 293 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 FAM106AQ4KMX7 169 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 Q71RC1 249 aaPredicted RBP3.1□□□□□ -1.91
USP53-205ENST00000509769 C8orf46Q8TAG6 207 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 TAF15Q92804 592 aaKnown RBP eCLIP3.1□□□□□ -1.91
USP53-205ENST00000509769 ZNF799Q96GE5 643 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 LOXL4Q96JB6 756 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 SLCO1C1Q9NYB5 712 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 SIGLEC8Q9NYZ4 499 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 RPUSD1Q9UJJ7 312 aaKnown RBP3.1□□□□□ -1.91
USP53-205ENST00000509769 RARRES3Q9UL19 164 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 PSME4Q14997 1843 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 TMEM213A2RRL7 107 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 IQCF6A8MYZ5 107 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 C9JCJ5 164 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 GFYI3L273 518 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 HIST1H2BKO60814 126 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 ICOSLGO75144 302 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 HIST1H2BJP06899 126 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 CSN3P07498 182 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 CYBAP13498 195 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 IL9P15248 144 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 PAX1P15863 534 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 HIST1H2BOP23527 126 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 HIST1H2BBP33778 126 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 TMEM50BP56557 158 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 HIST1H2BDP58876 126 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 HIST1H2BCP62807 126 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 MLF2Q15773 248 aaPredicted RBP3.1□□□□□ -1.91
USP53-205ENST00000509769 ZNF77Q15935 545 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 HIST2H2BEQ16778 126 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 DMRTC1Q5HYR2 192 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.1□□□□□ -1.91
USP53-205ENST00000509769 CD200R1LQ6Q8B3 271 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 LMO3Q8TAP4 145 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 ZNF519Q8TB69 540 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 HIST1H2BHQ93079 126 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 MISP3Q96FF7 219 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 ZNF668Q96K58 619 aaPredicted RBP3.1□□□□□ -1.91
USP53-205ENST00000509769 YPEL2Q96QA6 119 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 HIST1H2BNQ99877 126 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 HIST1H2BMQ99879 126 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 GLIPR2Q9H4G4 154 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 LTB4R2Q9NPC1 389 aa3.1□□□□□ -1.91
USP53-205ENST00000509769 DNAJB12Q9NXW2 375 aaKnown RBP3.1□□□□□ -1.91
USP53-205ENST00000509769 WSB2Q9NYS7 404 aaPredicted RBP3.1□□□□□ -1.91
USP53-205ENST00000509769 TRAV8-1A0A0A6YYK1 113 aa3.09□□□□□ -1.91
USP53-205ENST00000509769 A0A1B0GUT8 65 aa3.09□□□□□ -1.91
USP53-205ENST00000509769 RNF222A6NCQ9 220 aa3.09□□□□□ -1.91
USP53-205ENST00000509769 COLCA2A8K830 154 aa3.09□□□□□ -1.91
USP53-205ENST00000509769 TARM1B6A8C7 271 aa3.09□□□□□ -1.91
USP53-205ENST00000509769 FNDC10F2Z333 226 aa3.09□□□□□ -1.91
USP53-205ENST00000509769 LAMTOR5O43504 91 aa3.09□□□□□ -1.91
USP53-205ENST00000509769 GDF9O60383 454 aa3.09□□□□□ -1.91
USP53-205ENST00000509769 SBK3P0C264 359 aa3.09□□□□□ -1.91
USP53-205ENST00000509769 CXCL3P19876 107 aa3.09□□□□□ -1.91
USP53-205ENST00000509769 GZMHP20718 246 aa3.09□□□□□ -1.91
USP53-205ENST00000509769 HOXD9P28356 352 aaPredicted RBP3.09□□□□□ -1.91
USP53-205ENST00000509769 POLR2IP36954 125 aaKnown RBP3.09□□□□□ -1.91
USP53-205ENST00000509769 GUCA2AQ02747 115 aa3.09□□□□□ -1.91
USP53-205ENST00000509769 SRSF1Q07955 248 aaKnown RBP eCLIP3.09□□□□□ -1.91
USP53-205ENST00000509769 IL15RAQ13261 267 aa3.09□□□□□ -1.91
USP53-205ENST00000509769 ZNF79Q15937 498 aa3.09□□□□□ -1.91
USP53-205ENST00000509769 TBR1Q16650 682 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms