RNA–Protein interactions for RNA: ENST00000496298.5

USP40-217, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 665 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-217ENST00000496298 METTL1Q9UBP6 276 aaKnown RBP15.07■□□□□ 0
USP40-217ENST00000496298 FOXA2Q9Y261 457 aaPredicted RBP15.07■□□□□ 0
USP40-217ENST00000496298 A0A075B6Q4 140 aa15.06■□□□□ 0
USP40-217ENST00000496298 M0R1X1 148 aa15.06■□□□□ 0
USP40-217ENST00000496298 APOA2P02652 100 aa15.06■□□□□ 0
USP40-217ENST00000496298 SNRPBP14678 240 aaKnown RBP15.06■□□□□ 0
USP40-217ENST00000496298 DTYMKP23919 212 aa15.06■□□□□ 0
USP40-217ENST00000496298 RAB25P57735 213 aa15.06■□□□□ 0
USP40-217ENST00000496298 RPS16P62249 146 aaKnown RBP15.06■□□□□ 0
USP40-217ENST00000496298 TMEM267Q0VDI3 215 aaPredicted RBP15.06■□□□□ 0
USP40-217ENST00000496298 ARFRP1Q13795 201 aa15.06■□□□□ 0
USP40-217ENST00000496298 PLGLAQ15195 96 aa15.06■□□□□ 0
USP40-217ENST00000496298 CDNFQ49AH0 187 aa15.06■□□□□ 0
USP40-217ENST00000496298 ASPHD1Q5U4P2 390 aa15.06■□□□□ 0
USP40-217ENST00000496298 MAFIPQ8WZ33 124 aa15.06■□□□□ 0
USP40-217ENST00000496298 FLYWCH2Q96CP2 140 aaKnown RBP15.06■□□□□ 0
USP40-217ENST00000496298 OR2D2Q9H210 308 aa15.06■□□□□ 0
USP40-217ENST00000496298 ELF5Q9UKW6 265 aaPredicted RBP15.06■□□□□ 0
USP40-217ENST00000496298 IGKV1D-8A0A087WSZ0 117 aa15.05■□□□□ -0
USP40-217ENST00000496298 SMIM30A4D0T7 59 aa15.05■□□□□ -0
USP40-217ENST00000496298 RAMP3O60896 148 aa15.05■□□□□ -0
USP40-217ENST00000496298 TALDO1P37837 337 aa15.05■□□□□ -0
USP40-217ENST00000496298 LGALS7P47929 136 aa15.05■□□□□ -0
USP40-217ENST00000496298 LUMP51884 338 aaPredicted RBP15.05■□□□□ -0
USP40-217ENST00000496298 DGCR2P98153 550 aa15.05■□□□□ -0
USP40-217ENST00000496298 TAGLNQ01995 201 aaKnown RBP15.05■□□□□ -0
USP40-217ENST00000496298 ECSCRQ19T08 205 aa15.05■□□□□ -0
USP40-217ENST00000496298 C9orf66Q5T8R8 295 aa15.05■□□□□ -0
USP40-217ENST00000496298 HACD4Q5VWC8 232 aa15.05■□□□□ -0
USP40-217ENST00000496298 PPP1R27Q86WC6 154 aa15.05■□□□□ -0
USP40-217ENST00000496298 H1FOOQ8IZA3 346 aaPredicted RBP15.05■□□□□ -0
USP40-217ENST00000496298 OR1N2Q8NGR9 330 aa15.05■□□□□ -0
USP40-217ENST00000496298 C5orf30Q96GV9 206 aa15.05■□□□□ -0
USP40-217ENST00000496298 OR51E2Q9H255 320 aa15.05■□□□□ -0
USP40-217ENST00000496298 SLC35D1Q9NTN3 355 aa15.05■□□□□ -0
USP40-217ENST00000496298 SCOCQ9UIL1 159 aa15.05■□□□□ -0
USP40-217ENST00000496298 A0A1W2PN81 502 aa15.04■□□□□ -0
USP40-217ENST00000496298 IGLV2-23P01705 113 aa15.04■□□□□ -0
USP40-217ENST00000496298 CRYGBP07316 175 aa15.04■□□□□ -0
USP40-217ENST00000496298 OR8U8P0C7N1 319 aa15.04■□□□□ -0
USP40-217ENST00000496298 CHRNA7P36544 502 aa15.04■□□□□ -0
USP40-217ENST00000496298 GNB1P62873 340 aa15.04■□□□□ -0
USP40-217ENST00000496298 ZNF616Q08AN1 781 aa15.04■□□□□ -0
USP40-217ENST00000496298 PYHIN1Q6K0P9 492 aa15.04■□□□□ -0
USP40-217ENST00000496298 SFXN4Q6P4A7 337 aa15.04■□□□□ -0
USP40-217ENST00000496298 DCSTAMPQ9H295 470 aa15.04■□□□□ -0
USP40-217ENST00000496298 TPSG1Q9NRR2 321 aa15.04■□□□□ -0
USP40-217ENST00000496298 SLC25A17O43808 307 aa15.03■□□□□ -0
USP40-217ENST00000496298 SCGNO76038 276 aa15.03■□□□□ -0
USP40-217ENST00000496298 CA2P00918 260 aa15.03■□□□□ -0
USP40-217ENST00000496298 SDC2P34741 201 aa15.03■□□□□ -0
USP40-217ENST00000496298 SCAND1P57086 179 aa15.03■□□□□ -0
USP40-217ENST00000496298 SSBP2P81877 361 aaPredicted RBP15.03■□□□□ -0
USP40-217ENST00000496298 KCTD21Q4G0X4 260 aa15.03■□□□□ -0
USP40-217ENST00000496298 TMEM177Q53S58 311 aa15.03■□□□□ -0
USP40-217ENST00000496298 ACTBL2Q562R1 376 aa15.03■□□□□ -0
USP40-217ENST00000496298 DEFB121Q5J5C9 76 aa15.03■□□□□ -0
USP40-217ENST00000496298 CLCC1Q96S66 551 aa15.03■□□□□ -0
USP40-217ENST00000496298 GINS4Q9BRT9 223 aa15.03■□□□□ -0
USP40-217ENST00000496298 DAPK2Q9UIK4 370 aa15.03■□□□□ -0
USP40-217ENST00000496298 RRP15Q9Y3B9 282 aaKnown RBP15.03■□□□□ -0
USP40-217ENST00000496298 DNAH9Q9NYC9 4486 aa15.03■□□□□ -0
USP40-217ENST00000496298 SEC14L6B5MCN3 397 aa15.02■□□□□ -0
USP40-217ENST00000496298 ARPC1BO15143 372 aaKnown RBP15.02■□□□□ -0
USP40-217ENST00000496298 PITPNAQ00169 270 aa15.02■□□□□ -0
USP40-217ENST00000496298 ZNF260Q3ZCT1 412 aa15.02■□□□□ -0
USP40-217ENST00000496298 UNQ5815/PRO19632Q6UWF5 114 aa15.02■□□□□ -0
USP40-217ENST00000496298 LFNGQ8NES3 379 aa15.02■□□□□ -0
USP40-217ENST00000496298 DDB2Q92466 427 aa15.02■□□□□ -0
USP40-217ENST00000496298 ADTRPQ96IZ2 230 aa15.02■□□□□ -0
USP40-217ENST00000496298 FAM103A1Q9BTL3 118 aaKnown RBP15.02■□□□□ -0
USP40-217ENST00000496298 A3GALT2U3KPV4 340 aa15.02■□□□□ -0
USP40-217ENST00000496298 CTXN2P0C2S0 81 aa15.01□□□□□ -0.01
USP40-217ENST00000496298 RRASP10301 218 aa15.01□□□□□ -0.01
USP40-217ENST00000496298 DUTP33316 252 aaKnown RBP15.01□□□□□ -0.01
USP40-217ENST00000496298 INSL3P51460 131 aa15.01□□□□□ -0.01
USP40-217ENST00000496298 DCTN2Q13561 401 aaKnown RBP15.01□□□□□ -0.01
USP40-217ENST00000496298 FXYD3Q14802 87 aa15.01□□□□□ -0.01
USP40-217ENST00000496298 LGALS14Q8TCE9 139 aa15.01□□□□□ -0.01
USP40-217ENST00000496298 ABHD5Q8WTS1 349 aa15.01□□□□□ -0.01
USP40-217ENST00000496298 ARPC1AQ92747 370 aa15.01□□□□□ -0.01
USP40-217ENST00000496298 OR5B12Q96R08 314 aa15.01□□□□□ -0.01
USP40-217ENST00000496298 TNCP24821 2201 aa15□□□□□ -0.01
USP40-217ENST00000496298 SRRM4A7MD48 611 aaKnown RBP15□□□□□ -0.01
USP40-217ENST00000496298 LGALS1P09382 135 aaKnown RBP15□□□□□ -0.01
USP40-217ENST00000496298 CLEC2LP0C7M8 214 aa15□□□□□ -0.01
USP40-217ENST00000496298 BVESQ8NE79 360 aa15□□□□□ -0.01
USP40-217ENST00000496298 CASTOR1Q8WTX7 329 aa15□□□□□ -0.01
USP40-217ENST00000496298 RHOVQ96L33 236 aa15□□□□□ -0.01
USP40-217ENST00000496298 ST6GALNAC5Q9BVH7 336 aa15□□□□□ -0.01
USP40-217ENST00000496298 SLA2Q9H6Q3 261 aa15□□□□□ -0.01
USP40-217ENST00000496298 RNF167Q9H6Y7 350 aa15□□□□□ -0.01
USP40-217ENST00000496298 RHBDL2Q9NX52 303 aa15□□□□□ -0.01
USP40-217ENST00000496298 RBM7Q9Y580 266 aaKnown RBP15□□□□□ -0.01
USP40-217ENST00000496298 ETV7Q9Y603 341 aa15□□□□□ -0.01
USP40-217ENST00000496298 TMEM235A6NFC5 223 aa14.99□□□□□ -0.01
USP40-217ENST00000496298 SSX5O60225 188 aa14.99□□□□□ -0.01
USP40-217ENST00000496298 BRI3O95415 125 aa14.99□□□□□ -0.01
USP40-217ENST00000496298 HLA-DQB1P01920 261 aa14.99□□□□□ -0.01
USP40-217ENST00000496298 CD36P16671 472 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms