RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 ORAOV1Q8WV07 137 aa8.15□□□□□ -1.11
SYNE1-230ENST00000495090 CCDC74BQ96LY2 380 aa8.15□□□□□ -1.11
SYNE1-230ENST00000495090 MRPL18Q9H0U6 180 aaKnown RBP8.15□□□□□ -1.11
SYNE1-230ENST00000495090 PATZ1Q9HBE1 687 aaKnown RBP8.15□□□□□ -1.11
SYNE1-230ENST00000495090 MBNL3Q9NUK0 354 aaKnown RBP8.15□□□□□ -1.11
SYNE1-230ENST00000495090 ZNF586Q9NXT0 402 aa8.15□□□□□ -1.11
SYNE1-230ENST00000495090 WDR83OSQ9Y284 106 aa8.15□□□□□ -1.11
SYNE1-230ENST00000495090 MPC1Q9Y5U8 109 aa8.15□□□□□ -1.11
SYNE1-230ENST00000495090 GRIFINA4D1Z8 144 aa8.14□□□□□ -1.11
SYNE1-230ENST00000495090 RAB29O14966 203 aa8.14□□□□□ -1.11
SYNE1-230ENST00000495090 REG1AP05451 166 aa8.14□□□□□ -1.11
SYNE1-230ENST00000495090 CHRNB4P30926 498 aa8.14□□□□□ -1.11
SYNE1-230ENST00000495090 CDKN1AP38936 164 aa8.14□□□□□ -1.11
SYNE1-230ENST00000495090 GNG3P63215 75 aa8.14□□□□□ -1.11
SYNE1-230ENST00000495090 RPL19P84098 196 aaKnown RBP8.14□□□□□ -1.11
SYNE1-230ENST00000495090 C21orf62-AS1Q17RA5 79 aa8.14□□□□□ -1.11
SYNE1-230ENST00000495090 COX19Q49B96 90 aa8.14□□□□□ -1.11
SYNE1-230ENST00000495090 Q6P435 159 aa8.14□□□□□ -1.11
SYNE1-230ENST00000495090 C1orf174Q8IYL3 243 aa8.14□□□□□ -1.11
SYNE1-230ENST00000495090 ZNF645Q8N7E2 425 aa8.14□□□□□ -1.11
SYNE1-230ENST00000495090 ZNF114Q8NC26 417 aa8.14□□□□□ -1.11
SYNE1-230ENST00000495090 VN1R17PQ8TDU5 208 aa8.14□□□□□ -1.11
SYNE1-230ENST00000495090 QTRT1Q9BXR0 403 aaKnown RBP8.14□□□□□ -1.11
SYNE1-230ENST00000495090 LINC00470Q9BZP3 86 aa8.14□□□□□ -1.11
SYNE1-230ENST00000495090 GAL3ST2Q9H3Q3 398 aa8.14□□□□□ -1.11
SYNE1-230ENST00000495090 ZNF703Q9H7S9 590 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-230ENST00000495090 DNAJC4Q9NNZ3 241 aa8.14□□□□□ -1.11
SYNE1-230ENST00000495090 CRIM1Q9NZV1 1036 aa8.14□□□□□ -1.11
SYNE1-230ENST00000495090 UQCR10Q9UDW1 63 aa8.14□□□□□ -1.11
SYNE1-230ENST00000495090 RBM7Q9Y580 266 aaKnown RBP8.14□□□□□ -1.11
SYNE1-230ENST00000495090 CDH23Q9H251 3354 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 MED12Q93074 2177 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 TRBV20OR9-2A0A075B6H5 130 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 IGHV1-45A0A0A0MS14 117 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 ODAMA1E959 279 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 C9JCJ5 164 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 WDR1O75083 606 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 CRYAAP02489 173 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 MT-ND6P03923 174 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 LGALS4P56470 323 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 ZNF90Q03938 601 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 EIF4EBP1Q13541 118 aaPredicted RBP8.13□□□□□ -1.11
SYNE1-230ENST00000495090 OR10J3Q5JRS4 329 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 RPS19BP1Q86WX3 136 aaKnown RBP8.13□□□□□ -1.11
SYNE1-230ENST00000495090 BAGE3Q86Y29 109 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 BAGE2Q86Y30 109 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 SLC25A45Q8N413 288 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 C11orf42Q8N5U0 333 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 SIGLECL1Q8N7X8 197 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 Q8N976 141 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 WDR31Q8NA23 367 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 SGCZQ96LD1 299 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 IMMP1LQ96LU5 166 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 DERL1Q9BUN8 251 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 GNB1LQ9BYB4 327 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 SAMD10Q9BYL1 202 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 CLN8Q9UBY8 286 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 A0A1W2PPV4 95 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 ITGB1BP1O14713 200 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 CLDN14O95500 239 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 GPX1P07203 203 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 CBLN1P23435 193 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 CD1BP29016 333 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 CATR1Q13166 79 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 Q8IYB0 196 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 C11orf52Q96A22 123 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 ZNF552Q9H707 407 aaPredicted RBP8.13□□□□□ -1.11
SYNE1-230ENST00000495090 PRDM6Q9NQX0 595 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 KCNIP1Q9NZI2 227 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 UNC13CQ8NB66 2214 aa8.13□□□□□ -1.11
SYNE1-230ENST00000495090 EML6Q6ZMW3 1958 aa8.12□□□□□ -1.11
SYNE1-230ENST00000495090 C20orf202A1L168 122 aa8.12□□□□□ -1.11
SYNE1-230ENST00000495090 ANKRD30BLA7E2S9 258 aa8.12□□□□□ -1.11
SYNE1-230ENST00000495090 A8MXE2 369 aa8.12□□□□□ -1.11
SYNE1-230ENST00000495090 J3QT63 122 aa8.12□□□□□ -1.11
SYNE1-230ENST00000495090 TCF21O43680 179 aa8.12□□□□□ -1.11
SYNE1-230ENST00000495090 CXCL13O43927 109 aa8.12□□□□□ -1.11
SYNE1-230ENST00000495090 ZG16O60844 167 aa8.12□□□□□ -1.11
SYNE1-230ENST00000495090 CXorf1O96002 111 aa8.12□□□□□ -1.11
SYNE1-230ENST00000495090 STAG3L2P0CL84 134 aa8.12□□□□□ -1.11
SYNE1-230ENST00000495090 STAG3L3P0CL85 134 aa8.12□□□□□ -1.11
SYNE1-230ENST00000495090 EGR1P18146 543 aa8.12□□□□□ -1.11
SYNE1-230ENST00000495090 CD33P20138 364 aa8.12□□□□□ -1.11
SYNE1-230ENST00000495090 OPRK1P41145 380 aa8.12□□□□□ -1.11
SYNE1-230ENST00000495090 KLF3P57682 345 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-230ENST00000495090 SUMO1P63165 101 aaKnown RBP8.12□□□□□ -1.11
SYNE1-230ENST00000495090 BATFQ16520 125 aa8.12□□□□□ -1.11
SYNE1-230ENST00000495090 SAPCD1Q5SSQ6 148 aa8.12□□□□□ -1.11
SYNE1-230ENST00000495090 DCAF12Q5T6F0 453 aa8.12□□□□□ -1.11
SYNE1-230ENST00000495090 WDR73Q6P4I2 378 aa8.12□□□□□ -1.11
SYNE1-230ENST00000495090 OR1L6Q8NGR2 347 aa8.12□□□□□ -1.11
SYNE1-230ENST00000495090 OR10D3Q8NH80 312 aa8.12□□□□□ -1.11
SYNE1-230ENST00000495090 OCC1Q8TAD7 63 aa8.12□□□□□ -1.11
SYNE1-230ENST00000495090 SFXN3Q9BWM7 321 aa8.12□□□□□ -1.11
SYNE1-230ENST00000495090 FBXL7Q9UJT9 491 aa8.12□□□□□ -1.11
SYNE1-230ENST00000495090 TRAPPC2LQ9UL33 140 aa8.12□□□□□ -1.11
SYNE1-230ENST00000495090 ASXL3Q9C0F0 2248 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 IGKV3D-15A0A087WSY6 115 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 FAM166BA8MTA8 275 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 DIRC3C9JPN6 131 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms