RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 TPRX1Q8N7U7 411 aa16.46■□□□□ 0.22
COL27A1-207ENST00000494090 GPR146Q96CH1 333 aa16.46■□□□□ 0.22
COL27A1-207ENST00000494090 C1QTNF12Q5T7M4 302 aa16.45■□□□□ 0.22
COL27A1-207ENST00000494090 CALYQ9NYX4 217 aa16.45■□□□□ 0.22
COL27A1-207ENST00000494090 APELAP0DMC3 54 aa16.45■□□□□ 0.22
COL27A1-207ENST00000494090 MEF2BQ02080 365 aaPredicted RBP16.45■□□□□ 0.22
COL27A1-207ENST00000494090 DLL3Q9NYJ7 618 aa16.45■□□□□ 0.22
COL27A1-207ENST00000494090 ELOVL5Q9NYP7 299 aa16.45■□□□□ 0.22
COL27A1-207ENST00000494090 JPT1Q9UK76 154 aa16.45■□□□□ 0.22
COL27A1-207ENST00000494090 SRSF9Q13242 221 aaKnown RBP eCLIP16.45■□□□□ 0.227e-7■■□□□ 12.5
COL27A1-207ENST00000494090 BPIFA4PQ86YQ2 179 aa16.45■□□□□ 0.22
COL27A1-207ENST00000494090 ARID2Q68CP9 1835 aa16.45■□□□□ 0.22
COL27A1-207ENST00000494090 ZNFX1Q9P2E3 1918 aaKnown RBP16.45■□□□□ 0.22
COL27A1-207ENST00000494090 TMEM189A5PLL7 270 aa16.45■□□□□ 0.22
COL27A1-207ENST00000494090 MT-ND6P03923 174 aa16.45■□□□□ 0.22
COL27A1-207ENST00000494090 PQLC2Q6ZP29 291 aa16.45■□□□□ 0.22
COL27A1-207ENST00000494090 PRNTQ86SH4 94 aa16.45■□□□□ 0.22
COL27A1-207ENST00000494090 TAF15Q92804 592 aaKnown RBP eCLIP16.45■□□□□ 0.22
COL27A1-207ENST00000494090 ZNF430Q9H8G1 570 aaPredicted RBP16.45■□□□□ 0.22
COL27A1-207ENST00000494090 A6NDN8 102 aa16.44■□□□□ 0.22
COL27A1-207ENST00000494090 NPIPB6E9PJ23 425 aa16.44■□□□□ 0.22
COL27A1-207ENST00000494090 C16orf92Q96LL3 132 aa16.44■□□□□ 0.22
COL27A1-207ENST00000494090 SPAG17Q6Q759 2223 aa16.44■□□□□ 0.22
COL27A1-207ENST00000494090 Q5BKY6 102 aa16.44■□□□□ 0.22
COL27A1-207ENST00000494090 MS4A3Q96HJ5 214 aa16.44■□□□□ 0.22
COL27A1-207ENST00000494090 SHISA3A0PJX4 238 aa16.44■□□□□ 0.22
COL27A1-207ENST00000494090 PTGDSP41222 190 aa16.44■□□□□ 0.22
COL27A1-207ENST00000494090 RAB9AP51151 201 aa16.44■□□□□ 0.22
COL27A1-207ENST00000494090 UCP3P55916 312 aa16.44■□□□□ 0.22
COL27A1-207ENST00000494090 RPS11P62280 158 aaKnown RBP eCLIP16.44■□□□□ 0.22
COL27A1-207ENST00000494090 C10orf128Q5T292 105 aa16.44■□□□□ 0.22
COL27A1-207ENST00000494090 FGFRL1Q8N441 504 aa16.44■□□□□ 0.22
COL27A1-207ENST00000494090 LOC390937A0A1W2PQ73 354 aa16.44■□□□□ 0.22
COL27A1-207ENST00000494090 CRXO43186 299 aaPredicted RBP16.44■□□□□ 0.22
COL27A1-207ENST00000494090 GFRA3O60609 400 aa16.44■□□□□ 0.22
COL27A1-207ENST00000494090 MFAP4P55083 255 aa16.44■□□□□ 0.22
COL27A1-207ENST00000494090 PCOLCEQ15113 449 aa16.44■□□□□ 0.22
COL27A1-207ENST00000494090 TM4SF20Q53R12 229 aa16.44■□□□□ 0.22
COL27A1-207ENST00000494090 SYNGR3O43761 229 aa16.43■□□□□ 0.22
COL27A1-207ENST00000494090 CD8AP01732 235 aa16.43■□□□□ 0.22
COL27A1-207ENST00000494090 LINC00869P0C866 280 aa16.43■□□□□ 0.22
COL27A1-207ENST00000494090 FAM106AQ4KMX7 169 aa16.43■□□□□ 0.22
COL27A1-207ENST00000494090 UNQ5815/PRO19632Q6UWF5 114 aa16.43■□□□□ 0.22
COL27A1-207ENST00000494090 OR52M1Q8NGK5 317 aa16.43■□□□□ 0.22
COL27A1-207ENST00000494090 TMEM54Q969K7 222 aa16.43■□□□□ 0.22
COL27A1-207ENST00000494090 TMEM56-RWDD3S4R434 201 aa16.43■□□□□ 0.22
COL27A1-207ENST00000494090 ZNF883P0CG24 379 aa16.43■□□□□ 0.22
COL27A1-207ENST00000494090 MAS1LP35410 378 aa16.43■□□□□ 0.22
COL27A1-207ENST00000494090 GFRA1P56159 465 aa16.43■□□□□ 0.22
COL27A1-207ENST00000494090 DNM1P46Q6ZS02 220 aa16.43■□□□□ 0.22
COL27A1-207ENST00000494090 OR9G1Q8NH87 305 aa16.43■□□□□ 0.22
COL27A1-207ENST00000494090 ZNF729A6NN14 1252 aaPredicted RBP16.43■□□□□ 0.22
COL27A1-207ENST00000494090 ACAA1P09110 424 aaPredicted RBP16.43■□□□□ 0.22
COL27A1-207ENST00000494090 TLNRD1Q9H1K6 362 aa16.43■□□□□ 0.22
COL27A1-207ENST00000494090 PDLIM4P50479 330 aa16.43■□□□□ 0.22
COL27A1-207ENST00000494090 ATP5IP56385 69 aaPredicted RBP16.43■□□□□ 0.22
COL27A1-207ENST00000494090 NDUFB4O95168 129 aa16.42■□□□□ 0.22
COL27A1-207ENST00000494090 TMEM187Q14656 261 aa16.42■□□□□ 0.22
COL27A1-207ENST00000494090 POC1AQ8NBT0 407 aa16.42■□□□□ 0.22
COL27A1-207ENST00000494090 TMEM186Q96B77 213 aa16.42■□□□□ 0.22
COL27A1-207ENST00000494090 WNT5BQ9H1J7 359 aa16.42■□□□□ 0.22
COL27A1-207ENST00000494090 IGHV3-21A0A0B4J1V1 117 aa16.42■□□□□ 0.22
COL27A1-207ENST00000494090 KLRB1Q12918 225 aa16.42■□□□□ 0.22
COL27A1-207ENST00000494090 RRN3P1Q2M238 152 aa16.42■□□□□ 0.22
COL27A1-207ENST00000494090 ATG101Q9BSB4 218 aa16.42■□□□□ 0.22
COL27A1-207ENST00000494090 SRXN1Q9BYN0 137 aa16.42■□□□□ 0.22
COL27A1-207ENST00000494090 PPIAL4CA0A0B4J2A2 164 aa16.42■□□□□ 0.22
COL27A1-207ENST00000494090 PPIAL4GP0DN37 164 aa16.42■□□□□ 0.22
COL27A1-207ENST00000494090 RPS20P60866 119 aaKnown RBP16.42■□□□□ 0.22
COL27A1-207ENST00000494090 DDB2Q92466 427 aa16.42■□□□□ 0.22
COL27A1-207ENST00000494090 B9A039 149 aa16.41■□□□□ 0.22
COL27A1-207ENST00000494090 HSPE1P61604 102 aaKnown RBP16.41■□□□□ 0.22
COL27A1-207ENST00000494090 ZFP30Q9Y2G7 519 aa16.41■□□□□ 0.22
COL27A1-207ENST00000494090 WNK3Q9BYP7 1800 aa16.41■□□□□ 0.22
COL27A1-207ENST00000494090 TMSB15BA0A087X1C1 80 aa16.41■□□□□ 0.22
COL27A1-207ENST00000494090 A0A1W2PR77 199 aa16.41■□□□□ 0.22
COL27A1-207ENST00000494090 SIGLEC5O15389 551 aa16.41■□□□□ 0.22
COL27A1-207ENST00000494090 S1PR2O95136 353 aa16.41■□□□□ 0.22
COL27A1-207ENST00000494090 DANCRP0C864 163 aa16.41■□□□□ 0.22
COL27A1-207ENST00000494090 KLF14Q8TD94 323 aaPredicted RBP16.41■□□□□ 0.22
COL27A1-207ENST00000494090 AUP1Q9Y679 476 aa16.41■□□□□ 0.22
COL27A1-207ENST00000494090 A0A1W2PQM1 296 aa16.41■□□□□ 0.22
COL27A1-207ENST00000494090 LSM10Q969L4 123 aaKnown RBP16.41■□□□□ 0.22
COL27A1-207ENST00000494090 LINC00470Q9BZP3 86 aa16.41■□□□□ 0.22
COL27A1-207ENST00000494090 CKAP5Q14008 2032 aa16.41■□□□□ 0.22
COL27A1-207ENST00000494090 TRGC2P03986 189 aa16.41■□□□□ 0.22
COL27A1-207ENST00000494090 PSG9Q00887 426 aa16.41■□□□□ 0.22
COL27A1-207ENST00000494090 VN1R17PQ8TDU5 208 aa16.41■□□□□ 0.22
COL27A1-207ENST00000494090 MIEN1Q9BRT3 115 aa16.41■□□□□ 0.22
COL27A1-207ENST00000494090 IL36RNQ9UBH0 155 aa16.41■□□□□ 0.22
COL27A1-207ENST00000494090 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP16.4■□□□□ 0.22
COL27A1-207ENST00000494090 FOXH1O75593 365 aa16.4■□□□□ 0.22
COL27A1-207ENST00000494090 ZNF738Q8NE65 137 aa16.4■□□□□ 0.22
COL27A1-207ENST00000494090 FAM216AQ8WUB2 273 aa16.4■□□□□ 0.22
COL27A1-207ENST00000494090 OR4C12Q96R67 309 aa16.4■□□□□ 0.22
COL27A1-207ENST00000494090 A0A0G2JK05 382 aa16.4■□□□□ 0.22
COL27A1-207ENST00000494090 C9orf172C9J069 976 aa16.4■□□□□ 0.22
COL27A1-207ENST00000494090 ATXN7O15265 892 aaPredicted RBP16.4■□□□□ 0.22
COL27A1-207ENST00000494090 KLK2P20151 261 aa16.4■□□□□ 0.22
COL27A1-207ENST00000494090 CXorf65A6NEN9 183 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms