RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 Q499Y3 187 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 SPANXN4Q5MJ08 99 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 ZNF324BQ6AW86 544 aaPredicted RBP3.41□□□□□ -1.86
BRCA1-220ENST00000492859 UFSP1Q6NVU6 142 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 TRMT10BQ6PF06 316 aaKnown RBP3.41□□□□□ -1.86
BRCA1-220ENST00000492859 CNIH2Q6PI25 160 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 Q6ZVQ6 151 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 TCF23Q7RTU1 214 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 DAZ4Q86SG3 579 aaKnown RBP3.41□□□□□ -1.86
BRCA1-220ENST00000492859 RNF175Q8N4F7 328 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 DCAF4L2Q8NA75 395 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 SUMF2Q8NBJ7 301 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 OR2M3Q8NG83 312 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 RTP4Q96DX8 246 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 CIB3Q96Q77 187 aaPredicted RBP3.41□□□□□ -1.86
BRCA1-220ENST00000492859 HIST1H2BLQ99880 126 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 TM2D2Q9BX73 214 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 TSSK6Q9BXA6 273 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 TEX101Q9BY14 249 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 WDR61Q9GZS3 305 aaKnown RBP3.41□□□□□ -1.86
BRCA1-220ENST00000492859 PNRC2Q9NPJ4 139 aaKnown RBP3.41□□□□□ -1.86
BRCA1-220ENST00000492859 DAZ1Q9NQZ3 744 aaKnown RBP3.41□□□□□ -1.86
BRCA1-220ENST00000492859 DAZ3Q9NR90 486 aaKnown RBP3.41□□□□□ -1.86
BRCA1-220ENST00000492859 TMEM100Q9NV29 134 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 NTMQ9P121 344 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 MDFICQ9P1T7 246 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 SHPKQ9UHJ6 478 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 KCNE5Q9UJ90 142 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 ING1Q9UK53 422 aaPredicted RBP3.41□□□□□ -1.86
BRCA1-220ENST00000492859 SIGLEC7Q9Y286 467 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 IER3IP1Q9Y5U9 82 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 SYNJ1O43426 1573 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 LAMB4A4D0S4 1761 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 UBR2Q8IWV8 1755 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 KMT2EQ8IZD2 1858 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 MYO18AQ92614 2054 aaKnown RBP3.41□□□□□ -1.86
BRCA1-220ENST00000492859 PTPRKQ15262 1439 aa3.4□□□□□ -1.86
BRCA1-220ENST00000492859 FNDC1Q4ZHG4 1894 aaPredicted RBP3.4□□□□□ -1.86
BRCA1-220ENST00000492859 A2ML1A8K2U0 1454 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 NEO1Q92859 1461 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 A0A087WZ39 114 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 A0A0D9SG52 128 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 LOC101059948A0A1B0GTJ6 334 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 PLAC8L1A1L4L8 177 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 ZNF705GA8MUZ8 300 aaPredicted RBP3.4□□□□□ -1.87
BRCA1-220ENST00000492859 SNURFLB1AK76 121 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 DPM2O94777 84 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 CFDP00746 253 aaPredicted RBP3.4□□□□□ -1.87
BRCA1-220ENST00000492859 FABP4P15090 132 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 CTLA4P16410 223 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 PPP1CCP36873 323 aaKnown RBP3.4□□□□□ -1.87
BRCA1-220ENST00000492859 MYCNOSP40205 109 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 GDF5P43026 501 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 GUCA1AP43080 201 aaPredicted RBP3.4□□□□□ -1.87
BRCA1-220ENST00000492859 GPM6AP51674 278 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 SLC18A1P54219 525 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 RPS27AP62979 156 aaKnown RBP3.4□□□□□ -1.87
BRCA1-220ENST00000492859 FABP5Q01469 135 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 COL10A1Q03692 680 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 EFEMP1Q12805 493 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 EIF3IQ13347 325 aaKnown RBP3.4□□□□□ -1.87
BRCA1-220ENST00000492859 TMEM187Q14656 261 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 TDRG1Q3Y452 100 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 TEDDM1Q5T9Z0 273 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 TMEM244Q5VVB8 128 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 SP5Q6BEB4 398 aaPredicted RBP3.4□□□□□ -1.87
BRCA1-220ENST00000492859 AMMECR1LQ6DCA0 310 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 TMEM14EPQ6UXP3 125 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 DGAT2L6Q6ZPD8 337 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 LHFPL1Q86WI0 220 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 TCEANCQ8N8B7 351 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 MAPKAPK5-AS1Q8N8E1 139 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 ZNF441Q8N8Z8 693 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 SLC25A44Q96H78 314 aaPredicted RBP3.4□□□□□ -1.87
BRCA1-220ENST00000492859 AP1S3Q96PC3 154 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 ATG5Q9H1Y0 275 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 ESM1Q9NQ30 184 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 RPRMQ9NS64 109 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 RBM12B-AS1Q9P1G2 102 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 RIMS3Q9UJD0 308 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 KLF13Q9Y2Y9 288 aaPredicted RBP3.4□□□□□ -1.87
BRCA1-220ENST00000492859 SCN5AQ14524 2016 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 MYH8P13535 1937 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 MYO5CQ9NQX4 1742 aa3.4□□□□□ -1.87
BRCA1-220ENST00000492859 hCG_1818297A0A087WSY0 165 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 A8MT66 165 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 G3V3Q6 166 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 TIMM23O14925 209 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 NTN1O95631 604 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 BCL2P10415 239 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 RPS4Y1P22090 263 aaKnown RBP3.39□□□□□ -1.87
BRCA1-220ENST00000492859 FKBP2P26885 142 aaKnown RBP3.39□□□□□ -1.87
BRCA1-220ENST00000492859 PFN2P35080 140 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 FOLR3P41439 243 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 CCR2P41597 374 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 NDUFV3P56181 108 aaKnown RBP3.39□□□□□ -1.87
BRCA1-220ENST00000492859 RPS13P62277 151 aaKnown RBP3.39□□□□□ -1.87
BRCA1-220ENST00000492859 RPS24P62847 133 aaKnown RBP3.39□□□□□ -1.87
BRCA1-220ENST00000492859 SLC25A30Q5SVS4 291 aa3.39□□□□□ -1.87
BRCA1-220ENST00000492859 LYRM7Q5U5X0 104 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms