RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 TUSC2O75896 110 aa11.65□□□□□ -0.54
USP4-212ENST00000486549 IGKV1-16P04430 117 aa11.65□□□□□ -0.54
USP4-212ENST00000486549 CSF1P09603 554 aa11.65□□□□□ -0.54
USP4-212ENST00000486549 OR5H8P0DN80 308 aa11.65□□□□□ -0.54
USP4-212ENST00000486549 AADACP22760 399 aa11.65□□□□□ -0.54
USP4-212ENST00000486549 THBS3P49746 956 aa11.65□□□□□ -0.54
USP4-212ENST00000486549 RPS16P62249 146 aaKnown RBP11.65□□□□□ -0.54
USP4-212ENST00000486549 C5orf64Q2M2E5 130 aa11.65□□□□□ -0.54
USP4-212ENST00000486549 PDPNQ86YL7 162 aa11.65□□□□□ -0.54
USP4-212ENST00000486549 STPG2Q8N412 459 aa11.65□□□□□ -0.54
USP4-212ENST00000486549 NPBQ8NG41 125 aa11.65□□□□□ -0.54
USP4-212ENST00000486549 OR5AP2Q8NGF4 316 aa11.65□□□□□ -0.54
USP4-212ENST00000486549 DYNC2LI1Q8TCX1 351 aa11.65□□□□□ -0.54
USP4-212ENST00000486549 CHPT1Q8WUD6 406 aa11.65□□□□□ -0.54
USP4-212ENST00000486549 EHFQ9NZC4 300 aa11.65□□□□□ -0.54
USP4-212ENST00000486549 WNK1Q9H4A3 2382 aa11.65□□□□□ -0.54
USP4-212ENST00000486549 TCRBV4S1A1TA0A5B7 111 aa11.64□□□□□ -0.55
USP4-212ENST00000486549 RRHO14718 337 aa11.64□□□□□ -0.55
USP4-212ENST00000486549 NDUFA3O95167 84 aa11.64□□□□□ -0.55
USP4-212ENST00000486549 PMP2P02689 132 aa11.64□□□□□ -0.55
USP4-212ENST00000486549 FXYD4P59646 89 aa11.64□□□□□ -0.55
USP4-212ENST00000486549 CBX3Q13185 183 aa11.64□□□□□ -0.55
USP4-212ENST00000486549 CDK10Q15131 360 aa11.64□□□□□ -0.55
USP4-212ENST00000486549 LIN54Q6MZP7 749 aa11.64□□□□□ -0.55
USP4-212ENST00000486549 LAX1Q8IWV1 398 aa11.64□□□□□ -0.55
USP4-212ENST00000486549 BVESQ8NE79 360 aa11.64□□□□□ -0.55
USP4-212ENST00000486549 FAM110DQ8TAY7 271 aaPredicted RBP11.64□□□□□ -0.55
USP4-212ENST00000486549 SECTM1Q8WVN6 248 aa11.64□□□□□ -0.55
USP4-212ENST00000486549 FLYWCH2Q96CP2 140 aaKnown RBP11.64□□□□□ -0.55
USP4-212ENST00000486549 CLCC1Q96S66 551 aa11.64□□□□□ -0.55
USP4-212ENST00000486549 MIXL1Q9H2W2 232 aa11.64□□□□□ -0.55
USP4-212ENST00000486549 PARP11Q9NR21 331 aa11.64□□□□□ -0.55
USP4-212ENST00000486549 CCDC59Q9P031 241 aaKnown RBP11.64□□□□□ -0.55
USP4-212ENST00000486549 ANAPC10Q9UM13 185 aa11.64□□□□□ -0.55
USP4-212ENST00000486549 RBMX2Q9Y388 322 aaKnown RBP11.64□□□□□ -0.55
USP4-212ENST00000486549 CEPT1Q9Y6K0 416 aa11.64□□□□□ -0.55
USP4-212ENST00000486549 LINC00473A8K010 186 aa11.63□□□□□ -0.55
USP4-212ENST00000486549 CTDSP2O14595 271 aa11.63□□□□□ -0.55
USP4-212ENST00000486549 PPYP01298 95 aa11.63□□□□□ -0.55
USP4-212ENST00000486549 HLA-DRB1P01911 266 aa11.63□□□□□ -0.55
USP4-212ENST00000486549 HLA-DMAP28067 261 aa11.63□□□□□ -0.55
USP4-212ENST00000486549 DUTP33316 252 aaKnown RBP11.63□□□□□ -0.55
USP4-212ENST00000486549 RFX2P48378 723 aa11.63□□□□□ -0.55
USP4-212ENST00000486549 SLC35B1P78383 322 aa11.63□□□□□ -0.55
USP4-212ENST00000486549 RTL8BQ17RB0 113 aa11.63□□□□□ -0.55
USP4-212ENST00000486549 OR2B11Q5JQS5 317 aa11.63□□□□□ -0.55
USP4-212ENST00000486549 TCTEX1D4Q5JR98 221 aa11.63□□□□□ -0.55
USP4-212ENST00000486549 NDUFA11Q86Y39 141 aa11.63□□□□□ -0.55
USP4-212ENST00000486549 OR5H2Q8NGV7 314 aa11.63□□□□□ -0.55
USP4-212ENST00000486549 GPX8Q8TED1 209 aa11.63□□□□□ -0.55
USP4-212ENST00000486549 ADTRPQ96IZ2 230 aa11.63□□□□□ -0.55
USP4-212ENST00000486549 TSNAXQ99598 290 aaKnown RBP11.63□□□□□ -0.55
USP4-212ENST00000486549 RNF5Q99942 180 aa11.63□□□□□ -0.55
USP4-212ENST00000486549 C6orf62Q9GZU0 229 aaPredicted RBP11.63□□□□□ -0.55
USP4-212ENST00000486549 SCPEP1Q9HB40 452 aa11.63□□□□□ -0.55
USP4-212ENST00000486549 METTL1Q9UBP6 276 aaKnown RBP11.63□□□□□ -0.55
USP4-212ENST00000486549 ADAM30Q9UKF2 790 aa11.63□□□□□ -0.55
USP4-212ENST00000486549 IGHV7-81A0A0B4J1V7 117 aa11.62□□□□□ -0.55
USP4-212ENST00000486549 SLC25A17O43808 307 aa11.62□□□□□ -0.55
USP4-212ENST00000486549 SLC22A5O76082 557 aa11.62□□□□□ -0.55
USP4-212ENST00000486549 VDAC1P21796 283 aa11.62□□□□□ -0.55
USP4-212ENST00000486549 TAS2R46P59540 309 aa11.62□□□□□ -0.55
USP4-212ENST00000486549 HERV-K104P61576 105 aa11.62□□□□□ -0.55
USP4-212ENST00000486549 CD83Q01151 205 aa11.62□□□□□ -0.55
USP4-212ENST00000486549 PSG5Q15238 335 aa11.62□□□□□ -0.55
USP4-212ENST00000486549 KCTD9Q7L273 389 aa11.62□□□□□ -0.55
USP4-212ENST00000486549 TMEM17Q86X19 198 aa11.62□□□□□ -0.55
USP4-212ENST00000486549 ABHD5Q8WTS1 349 aa11.62□□□□□ -0.55
USP4-212ENST00000486549 HARBI1Q96MB7 349 aa11.62□□□□□ -0.55
USP4-212ENST00000486549 SLC5A7Q9GZV3 580 aa11.62□□□□□ -0.55
USP4-212ENST00000486549 OR51J1Q9H342 316 aa11.62□□□□□ -0.55
USP4-212ENST00000486549 CCL28Q9NRJ3 127 aa11.62□□□□□ -0.55
USP4-212ENST00000486549 TPSG1Q9NRR2 321 aa11.62□□□□□ -0.55
USP4-212ENST00000486549 TAS2R8Q9NYW2 309 aa11.62□□□□□ -0.55
USP4-212ENST00000486549 PLXNB1O43157 2135 aa11.62□□□□□ -0.55
USP4-212ENST00000486549 ADARB2-AS1A8MUL3 147 aa11.61□□□□□ -0.55
USP4-212ENST00000486549 FCN1O00602 326 aa11.61□□□□□ -0.55
USP4-212ENST00000486549 SHOXO15266 292 aa11.61□□□□□ -0.55
USP4-212ENST00000486549 ATP6V0E1O15342 81 aa11.61□□□□□ -0.55
USP4-212ENST00000486549 TNFSF12O43508 249 aa11.61□□□□□ -0.55
USP4-212ENST00000486549 FCGR3BO75015 233 aa11.61□□□□□ -0.55
USP4-212ENST00000486549 SPDEFO95238 335 aa11.61□□□□□ -0.55
USP4-212ENST00000486549 CRYZL1O95825 349 aa11.61□□□□□ -0.55
USP4-212ENST00000486549 IGLV2-14P01704 120 aa11.61□□□□□ -0.55
USP4-212ENST00000486549 OPN1MWP04001 364 aa11.61□□□□□ -0.55
USP4-212ENST00000486549 OPN1MW2P0DN77 364 aa11.61□□□□□ -0.55
USP4-212ENST00000486549 OPN1MW3P0DN78 364 aa11.61□□□□□ -0.55
USP4-212ENST00000486549 RRASP10301 218 aa11.61□□□□□ -0.55
USP4-212ENST00000486549 NAT1P18440 290 aa11.61□□□□□ -0.55
USP4-212ENST00000486549 RCVRNP35243 200 aa11.61□□□□□ -0.55
USP4-212ENST00000486549 HRH1P35367 487 aa11.61□□□□□ -0.55
USP4-212ENST00000486549 TAGLNQ01995 201 aaKnown RBP11.61□□□□□ -0.55
USP4-212ENST00000486549 TCTEX1D2Q8WW35 142 aa11.61□□□□□ -0.55
USP4-212ENST00000486549 DDB2Q92466 427 aa11.61□□□□□ -0.55
USP4-212ENST00000486549 R3HDM4Q96D70 268 aa11.61□□□□□ -0.55
USP4-212ENST00000486549 GPHA2Q96T91 129 aa11.61□□□□□ -0.55
USP4-212ENST00000486549 ZNF2Q9BSG1 426 aaPredicted RBP11.61□□□□□ -0.55
USP4-212ENST00000486549 DCUN1D5Q9BTE7 237 aa11.61□□□□□ -0.55
USP4-212ENST00000486549 TSSC4Q9Y5U2 329 aaPredicted RBP11.61□□□□□ -0.55
USP4-212ENST00000486549 WSB1Q9Y6I7 421 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms