RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 NUFIP2Q7Z417 695 aaKnown RBP11.22□□□□□ -0.61
USP40-214ENST00000483519 GGNQ86UU5 652 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 NPCDR1Q9BY65 106 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 WDR54Q9H977 334 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 DLL3Q9NYJ7 618 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 PLA2G3Q9NZ20 509 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 CRIM1Q9NZV1 1036 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 CDC34P49427 236 aaPredicted RBP11.22□□□□□ -0.61
USP40-214ENST00000483519 TEX43Q6ZNM6 134 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 YRDCQ86U90 279 aaKnown RBP11.22□□□□□ -0.61
USP40-214ENST00000483519 FAM58AQ8N1B3 248 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 APOBEC3DQ96AK3 386 aaPredicted RBP11.22□□□□□ -0.61
USP40-214ENST00000483519 ELOVL5Q9NYP7 299 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 ASCC3Q8N3C0 2202 aaKnown RBP11.21□□□□□ -0.61
USP40-214ENST00000483519 MDFIC2A0A1B0GVS7 189 aa11.21□□□□□ -0.61
USP40-214ENST00000483519 F6UZH7 168 aa11.21□□□□□ -0.61
USP40-214ENST00000483519 NPPCP23582 126 aa11.21□□□□□ -0.61
USP40-214ENST00000483519 PRR18Q8N4B5 295 aa11.21□□□□□ -0.61
USP40-214ENST00000483519 SGMS2Q8NHU3 365 aa11.21□□□□□ -0.61
USP40-214ENST00000483519 DUSP23Q9BVJ7 150 aa11.21□□□□□ -0.61
USP40-214ENST00000483519 KCNIP2Q9NS61 270 aa11.21□□□□□ -0.61
USP40-214ENST00000483519 PI4KAP42356 2102 aa11.21□□□□□ -0.62
USP40-214ENST00000483519 A0A1B0GUS0 222 aa11.21□□□□□ -0.62
USP40-214ENST00000483519 C5orf49A4QMS7 147 aa11.21□□□□□ -0.62
USP40-214ENST00000483519 ADMP35318 185 aa11.21□□□□□ -0.62
USP40-214ENST00000483519 YPEL3P61236 119 aaPredicted RBP11.21□□□□□ -0.62
USP40-214ENST00000483519 TFF3Q07654 80 aa11.21□□□□□ -0.62
USP40-214ENST00000483519 FAM169BQ8N8A8 192 aa11.21□□□□□ -0.62
USP40-214ENST00000483519 OR10D3Q8NH80 312 aa11.21□□□□□ -0.62
USP40-214ENST00000483519 SFRP2Q96HF1 295 aa11.21□□□□□ -0.62
USP40-214ENST00000483519 ZNF488Q96MN9 340 aa11.21□□□□□ -0.62
USP40-214ENST00000483519 ZNF552Q9H707 407 aaPredicted RBP11.21□□□□□ -0.62
USP40-214ENST00000483519 TNRC6AQ8NDV7 1962 aaKnown RBP11.2□□□□□ -0.62
USP40-214ENST00000483519 NUPR1O60356 82 aa11.2□□□□□ -0.62
USP40-214ENST00000483519 CER1O95813 267 aa11.2□□□□□ -0.62
USP40-214ENST00000483519 IRF2P14316 349 aa11.2□□□□□ -0.62
USP40-214ENST00000483519 GNB1P62873 340 aa11.2□□□□□ -0.62
USP40-214ENST00000483519 IMMP1LQ96LU5 166 aa11.2□□□□□ -0.62
USP40-214ENST00000483519 OR51B6Q9H340 312 aa11.2□□□□□ -0.62
USP40-214ENST00000483519 ZDHHC11Q9H8X9 412 aa11.2□□□□□ -0.62
USP40-214ENST00000483519 CHODLQ9H9P2 273 aa11.2□□□□□ -0.62
USP40-214ENST00000483519 CNTRLQ7Z7A1 2325 aa11.2□□□□□ -0.62
USP40-214ENST00000483519 IGHV5-10-1A0A0J9YXX1 117 aa11.2□□□□□ -0.62
USP40-214ENST00000483519 A6NNC1 897 aa11.2□□□□□ -0.62
USP40-214ENST00000483519 NPSP0C0P6 89 aa11.2□□□□□ -0.62
USP40-214ENST00000483519 SELENOTP62341 195 aa11.2□□□□□ -0.62
USP40-214ENST00000483519 RPS19BP1Q86WX3 136 aaKnown RBP11.2□□□□□ -0.62
USP40-214ENST00000483519 DRAM1Q8N682 238 aa11.2□□□□□ -0.62
USP40-214ENST00000483519 OR5P3Q8WZ94 311 aa11.2□□□□□ -0.62
USP40-214ENST00000483519 CIB3Q96Q77 187 aaPredicted RBP11.2□□□□□ -0.62
USP40-214ENST00000483519 AKIRIN1Q9H9L7 192 aaPredicted RBP11.2□□□□□ -0.62
USP40-214ENST00000483519 TRAPPC2LQ9UL33 140 aa11.2□□□□□ -0.62
USP40-214ENST00000483519 OR5B21A6NL26 309 aa11.19□□□□□ -0.62
USP40-214ENST00000483519 YPEL1O60688 119 aa11.19□□□□□ -0.62
USP40-214ENST00000483519 KRASP01116 189 aa11.19□□□□□ -0.62
USP40-214ENST00000483519 COX6A1P12074 109 aa11.19□□□□□ -0.62
USP40-214ENST00000483519 BRS3P32247 399 aa11.19□□□□□ -0.62
USP40-214ENST00000483519 PLA2G5P39877 138 aa11.19□□□□□ -0.62
USP40-214ENST00000483519 GNG3P63215 75 aa11.19□□□□□ -0.62
USP40-214ENST00000483519 VWC2Q2TAL6 325 aa11.19□□□□□ -0.62
USP40-214ENST00000483519 TPTE2P1Q5T6R2 138 aa11.19□□□□□ -0.62
USP40-214ENST00000483519 YPEL2Q96QA6 119 aa11.19□□□□□ -0.62
USP40-214ENST00000483519 VAMP8Q9BV40 100 aa11.19□□□□□ -0.62
USP40-214ENST00000483519 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.19□□□□□ -0.62
USP40-214ENST00000483519 CLN8Q9UBY8 286 aa11.19□□□□□ -0.62
USP40-214ENST00000483519 CACNA1EQ15878 2313 aa11.19□□□□□ -0.62
USP40-214ENST00000483519 A0A1W2PR80 420 aa11.19□□□□□ -0.62
USP40-214ENST00000483519 LRRC30A6NM36 301 aa11.19□□□□□ -0.62
USP40-214ENST00000483519 ANKRD30BLA7E2S9 258 aa11.19□□□□□ -0.62
USP40-214ENST00000483519 PMS2P5A8MQ11 134 aa11.19□□□□□ -0.62
USP40-214ENST00000483519 NDUFB4O95168 129 aa11.19□□□□□ -0.62
USP40-214ENST00000483519 CRYAAP02489 173 aa11.19□□□□□ -0.62
USP40-214ENST00000483519 C1QTNF9P0C862 333 aa11.19□□□□□ -0.62
USP40-214ENST00000483519 KITLGP21583 273 aa11.19□□□□□ -0.62
USP40-214ENST00000483519 TMEM249Q2WGJ8 235 aa11.19□□□□□ -0.62
USP40-214ENST00000483519 Q6ZWC4 215 aa11.19□□□□□ -0.62
USP40-214ENST00000483519 CCDC74BQ96LY2 380 aa11.19□□□□□ -0.62
USP40-214ENST00000483519 DIRC2Q96SL1 478 aa11.19□□□□□ -0.62
USP40-214ENST00000483519 PATZ1Q9HBE1 687 aaKnown RBP11.19□□□□□ -0.62
USP40-214ENST00000483519 LPAR2Q9HBW0 351 aa11.19□□□□□ -0.62
USP40-214ENST00000483519 MRPS18CQ9Y3D5 142 aaKnown RBP11.19□□□□□ -0.62
USP40-214ENST00000483519 IGHV3-9P01782 118 aa11.18□□□□□ -0.62
USP40-214ENST00000483519 ESDP10768 282 aa11.18□□□□□ -0.62
USP40-214ENST00000483519 CCL2P13500 99 aa11.18□□□□□ -0.62
USP40-214ENST00000483519 DTD1Q8TEA8 209 aa11.18□□□□□ -0.62
USP40-214ENST00000483519 ABHD3Q8WU67 409 aa11.18□□□□□ -0.62
USP40-214ENST00000483519 TMEM45BQ96B21 275 aa11.18□□□□□ -0.62
USP40-214ENST00000483519 TXNDC17Q9BRA2 123 aa11.18□□□□□ -0.62
USP40-214ENST00000483519 PKIBQ9C010 78 aa11.18□□□□□ -0.62
USP40-214ENST00000483519 AURKAIP1Q9NWT8 199 aaPredicted RBP11.18□□□□□ -0.62
USP40-214ENST00000483519 MPC1Q9Y5U8 109 aa11.18□□□□□ -0.62
USP40-214ENST00000483519 TRAV9-1A0A075B6T8 112 aa11.18□□□□□ -0.62
USP40-214ENST00000483519 P04436 131 aa11.18□□□□□ -0.62
USP40-214ENST00000483519 ATP5G3P48201 142 aa11.18□□□□□ -0.62
USP40-214ENST00000483519 TNFSF10P50591 281 aa11.18□□□□□ -0.62
USP40-214ENST00000483519 MLF1P58340 268 aa11.18□□□□□ -0.62
USP40-214ENST00000483519 CCL7P80098 99 aa11.18□□□□□ -0.62
USP40-214ENST00000483519 ARF1P84077 181 aaKnown RBP11.18□□□□□ -0.62
USP40-214ENST00000483519 ARSJQ5FYB0 599 aaPredicted RBP11.18□□□□□ -0.62
USP40-214ENST00000483519 GUSBP11Q6P575 273 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms