RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 NPVFQ9HCQ7 196 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 ONECUT1Q9UBC0 465 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 GYPAP02724 150 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 SSTR5P35346 364 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 MEF2BQ02080 365 aaPredicted RBP12.41□□□□□ -0.42
HDAC6-220ENST00000477528 NCMAPQ5T1S8 102 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 TGIF2LYQ8IUE0 185 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 TGIF2LXQ8IUE1 241 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 AMMECR1Q9Y4X0 333 aaPredicted RBP12.41□□□□□ -0.42
HDAC6-220ENST00000477528 OR51B2Q9Y5P1 312 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 OR4P4Q8NGL7 312 aa12.4□□□□□ -0.42
HDAC6-220ENST00000477528 PHF3Q92576 2039 aaKnown RBP12.4□□□□□ -0.42
HDAC6-220ENST00000477528 SPTA1P02549 2419 aa12.4□□□□□ -0.42
HDAC6-220ENST00000477528 ZG16O60844 167 aa12.4□□□□□ -0.42
HDAC6-220ENST00000477528 BATFQ16520 125 aa12.4□□□□□ -0.42
HDAC6-220ENST00000477528 TIMM23BQ5SRD1 257 aa12.4□□□□□ -0.42
HDAC6-220ENST00000477528 XKRY2A2RUG3 117 aa12.4□□□□□ -0.42
HDAC6-220ENST00000477528 CSN1S1P47710 185 aa12.4□□□□□ -0.42
HDAC6-220ENST00000477528 KIAA1549LQ6ZVL6 1849 aa12.4□□□□□ -0.42
HDAC6-220ENST00000477528 OR5B3Q8NH48 314 aa12.4□□□□□ -0.42
HDAC6-220ENST00000477528 CISD1Q9NZ45 108 aaKnown RBP12.4□□□□□ -0.42
HDAC6-220ENST00000477528 ZNF835Q9Y2P0 537 aa12.4□□□□□ -0.42
HDAC6-220ENST00000477528 TRAV24A0A0B4J272 114 aa12.4□□□□□ -0.43
HDAC6-220ENST00000477528 PROB1E7EW31 1015 aa12.4□□□□□ -0.43
HDAC6-220ENST00000477528 CYB5R3P00387 301 aaPredicted RBP12.4□□□□□ -0.43
HDAC6-220ENST00000477528 CHRNB4P30926 498 aa12.4□□□□□ -0.43
HDAC6-220ENST00000477528 SLC16A13Q7RTY0 426 aa12.4□□□□□ -0.43
HDAC6-220ENST00000477528 OR1L8Q8NGR8 309 aa12.4□□□□□ -0.43
HDAC6-220ENST00000477528 SPRR3Q9UBC9 169 aa12.4□□□□□ -0.43
HDAC6-220ENST00000477528 H0YL77 283 aa12.39□□□□□ -0.43
HDAC6-220ENST00000477528 COX7A1P24310 79 aa12.39□□□□□ -0.43
HDAC6-220ENST00000477528 GLRXP35754 106 aa12.39□□□□□ -0.43
HDAC6-220ENST00000477528 PRR27Q6MZM9 219 aa12.39□□□□□ -0.43
HDAC6-220ENST00000477528 PLPPR1Q8TBJ4 325 aa12.39□□□□□ -0.43
HDAC6-220ENST00000477528 CA5BP1Q8WTZ4 195 aa12.39□□□□□ -0.43
HDAC6-220ENST00000477528 E9PLN8 166 aa12.39□□□□□ -0.43
HDAC6-220ENST00000477528 REG4Q9BYZ8 158 aa12.39□□□□□ -0.43
HDAC6-220ENST00000477528 C19orf67A6NJJ6 358 aa12.39□□□□□ -0.43
HDAC6-220ENST00000477528 CT45A10P0DMU9 189 aa12.39□□□□□ -0.43
HDAC6-220ENST00000477528 RPS2P15880 293 aaKnown RBP12.39□□□□□ -0.43
HDAC6-220ENST00000477528 PSG5Q15238 335 aa12.39□□□□□ -0.43
HDAC6-220ENST00000477528 CYTL1Q9NRR1 136 aa12.39□□□□□ -0.43
HDAC6-220ENST00000477528 IL19Q9UHD0 177 aa12.39□□□□□ -0.43
HDAC6-220ENST00000477528 CLN5O75503 358 aa12.39□□□□□ -0.43
HDAC6-220ENST00000477528 WNT5AP41221 380 aa12.39□□□□□ -0.43
HDAC6-220ENST00000477528 ACSF3Q4G176 576 aaPredicted RBP12.39□□□□□ -0.43
HDAC6-220ENST00000477528 C9orf106Q8NAJ2 232 aa12.39□□□□□ -0.43
HDAC6-220ENST00000477528 OR10G8Q8NGN5 311 aa12.39□□□□□ -0.43
HDAC6-220ENST00000477528 EP300Q09472 2414 aaPredicted RBP12.38□□□□□ -0.43
HDAC6-220ENST00000477528 CNOT1A5YKK6 2376 aaKnown RBP12.38□□□□□ -0.43
HDAC6-220ENST00000477528 GPR179Q6PRD1 2367 aa12.38□□□□□ -0.43
HDAC6-220ENST00000477528 IGHV2OR16-5A0A0B4J2B6 119 aa12.38□□□□□ -0.43
HDAC6-220ENST00000477528 C20orf202A1L168 122 aa12.38□□□□□ -0.43
HDAC6-220ENST00000477528 ZNF98A6NK75 572 aa12.38□□□□□ -0.43
HDAC6-220ENST00000477528 DNASE2O00115 360 aaPredicted RBP12.38□□□□□ -0.43
HDAC6-220ENST00000477528 PPIHO43447 177 aaKnown RBP12.38□□□□□ -0.43
HDAC6-220ENST00000477528 ZNF714Q96N38 554 aa12.38□□□□□ -0.43
HDAC6-220ENST00000477528 WDR61Q9GZS3 305 aaKnown RBP12.38□□□□□ -0.43
HDAC6-220ENST00000477528 RAB1BQ9H0U4 201 aa12.38□□□□□ -0.43
HDAC6-220ENST00000477528 SEBOXQ9HB31 216 aaPredicted RBP12.38□□□□□ -0.43
HDAC6-220ENST00000477528 PROK2Q9HC23 129 aa12.38□□□□□ -0.43
HDAC6-220ENST00000477528 TMEM140Q9NV12 185 aa12.38□□□□□ -0.43
HDAC6-220ENST00000477528 PXMP4Q9Y6I8 212 aa12.38□□□□□ -0.43
HDAC6-220ENST00000477528 TPRP12270 2363 aaKnown RBP12.38□□□□□ -0.43
HDAC6-220ENST00000477528 UBE2L3P68036 154 aaKnown RBP12.38□□□□□ -0.43
HDAC6-220ENST00000477528 C1orf147Q96MC9 270 aaPredicted RBP12.38□□□□□ -0.43
HDAC6-220ENST00000477528 SIGLECL1Q8N7X8 197 aa12.38□□□□□ -0.43
HDAC6-220ENST00000477528 OR4D5Q8NGN0 318 aa12.38□□□□□ -0.43
HDAC6-220ENST00000477528 RAB1CQ92928 201 aa12.38□□□□□ -0.43
HDAC6-220ENST00000477528 TPPP3Q9BW30 176 aa12.38□□□□□ -0.43
HDAC6-220ENST00000477528 ZNF586Q9NXT0 402 aa12.38□□□□□ -0.43
HDAC6-220ENST00000477528 IDI2-AS1Q9NZ38 188 aa12.38□□□□□ -0.43
HDAC6-220ENST00000477528 DOK5Q9P104 306 aa12.38□□□□□ -0.43
HDAC6-220ENST00000477528 CEACAM18A8MTB9 384 aa12.37□□□□□ -0.43
HDAC6-220ENST00000477528 RD3LP0DJH9 198 aa12.37□□□□□ -0.43
HDAC6-220ENST00000477528 ZNF506Q5JVG8 444 aa12.37□□□□□ -0.43
HDAC6-220ENST00000477528 ASCL4Q6XD76 172 aa12.37□□□□□ -0.43
HDAC6-220ENST00000477528 RNF166Q96A37 237 aaPredicted RBP12.37□□□□□ -0.43
HDAC6-220ENST00000477528 RPRMQ9NS64 109 aa12.37□□□□□ -0.43
HDAC6-220ENST00000477528 TNXAQ16473 311 aa12.37□□□□□ -0.43
HDAC6-220ENST00000477528 ZNF497Q6ZNH5 498 aa12.37□□□□□ -0.43
HDAC6-220ENST00000477528 DVL1O14640 695 aa12.37□□□□□ -0.43
HDAC6-220ENST00000477528 HGFACQ04756 655 aa12.37□□□□□ -0.43
HDAC6-220ENST00000477528 TMEM30BQ3MIR4 351 aa12.37□□□□□ -0.43
HDAC6-220ENST00000477528 TXNDC17Q9BRA2 123 aa12.37□□□□□ -0.43
HDAC6-220ENST00000477528 TIMM9Q9Y5J7 89 aa12.37□□□□□ -0.43
HDAC6-220ENST00000477528 LOC105371267A0A1B0GV96 52 aa12.37□□□□□ -0.43
HDAC6-220ENST00000477528 CXorf65A6NEN9 183 aa12.37□□□□□ -0.43
HDAC6-220ENST00000477528 PHOX2AO14813 284 aa12.37□□□□□ -0.43
HDAC6-220ENST00000477528 YIF1AO95070 293 aa12.37□□□□□ -0.43
HDAC6-220ENST00000477528 RAB4AP20338 218 aa12.37□□□□□ -0.43
HDAC6-220ENST00000477528 ID3Q02535 119 aa12.37□□□□□ -0.43
HDAC6-220ENST00000477528 WDFY1Q8IWB7 410 aa12.37□□□□□ -0.43
HDAC6-220ENST00000477528 MEGF10Q96KG7 1140 aa12.37□□□□□ -0.43
HDAC6-220ENST00000477528 FBP1P09467 338 aa12.36□□□□□ -0.43
HDAC6-220ENST00000477528 OR4A8P0C604 315 aa12.36□□□□□ -0.43
HDAC6-220ENST00000477528 CEACAM3P40198 252 aa12.36□□□□□ -0.43
HDAC6-220ENST00000477528 HABP2Q14520 560 aaPredicted RBP12.36□□□□□ -0.43
HDAC6-220ENST00000477528 RPEL1Q2QD12 228 aa12.36□□□□□ -0.43
HDAC6-220ENST00000477528 ZNF439Q8NDP4 499 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms