RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 C19orf54Q5BKX5 351 aa12.21□□□□□ -0.45
CCDC88B-205ENST00000472524 OR1N2Q8NGR9 330 aa12.21□□□□□ -0.45
CCDC88B-205ENST00000472524 OR10J5Q8NHC4 309 aa12.21□□□□□ -0.45
CCDC88B-205ENST00000472524 TSNAXQ99598 290 aaKnown RBP12.21□□□□□ -0.45
CCDC88B-205ENST00000472524 CABLES2Q9BTV7 478 aa12.21□□□□□ -0.45
CCDC88B-205ENST00000472524 ALX4Q9H161 411 aaPredicted RBP12.21□□□□□ -0.45
CCDC88B-205ENST00000472524 SLC35D1Q9NTN3 355 aa12.21□□□□□ -0.45
CCDC88B-205ENST00000472524 METTL21EPA6NDL7 271 aa12.2□□□□□ -0.46
CCDC88B-205ENST00000472524 RAB27BO00194 218 aa12.2□□□□□ -0.46
CCDC88B-205ENST00000472524 MRPS14O60783 128 aaKnown RBP12.2□□□□□ -0.46
CCDC88B-205ENST00000472524 RAMP3O60896 148 aa12.2□□□□□ -0.46
CCDC88B-205ENST00000472524 OR8U8P0C7N1 319 aa12.2□□□□□ -0.46
CCDC88B-205ENST00000472524 EGR2P11161 476 aaPredicted RBP12.2□□□□□ -0.46
CCDC88B-205ENST00000472524 GALP22466 123 aa12.2□□□□□ -0.46
CCDC88B-205ENST00000472524 TALDO1P37837 337 aa12.2□□□□□ -0.46
CCDC88B-205ENST00000472524 ECI1P42126 302 aa12.2□□□□□ -0.46
CCDC88B-205ENST00000472524 CRIP2P52943 208 aaPredicted RBP12.2□□□□□ -0.46
CCDC88B-205ENST00000472524 ARFRP1Q13795 201 aa12.2□□□□□ -0.46
CCDC88B-205ENST00000472524 ZNF260Q3ZCT1 412 aa12.2□□□□□ -0.46
CCDC88B-205ENST00000472524 ASPHD1Q5U4P2 390 aa12.2□□□□□ -0.46
CCDC88B-205ENST00000472524 UBE2UQ5VVX9 321 aa12.2□□□□□ -0.46
CCDC88B-205ENST00000472524 UNQ5815/PRO19632Q6UWF5 114 aa12.2□□□□□ -0.46
CCDC88B-205ENST00000472524 PPP1R27Q86WC6 154 aa12.2□□□□□ -0.46
CCDC88B-205ENST00000472524 NR2C2APQ86WQ0 139 aa12.2□□□□□ -0.46
CCDC88B-205ENST00000472524 PDPNQ86YL7 162 aa12.2□□□□□ -0.46
CCDC88B-205ENST00000472524 SPARTQ8N0X7 666 aa12.2□□□□□ -0.46
CCDC88B-205ENST00000472524 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.2□□□□□ -0.46
CCDC88B-205ENST00000472524 PRR25Q96S07 402 aa12.2□□□□□ -0.46
CCDC88B-205ENST00000472524 RNF5Q99942 180 aa12.2□□□□□ -0.46
CCDC88B-205ENST00000472524 ATG5Q9H1Y0 275 aa12.2□□□□□ -0.46
CCDC88B-205ENST00000472524 Q9H521 79 aa12.2□□□□□ -0.46
CCDC88B-205ENST00000472524 TPSG1Q9NRR2 321 aa12.2□□□□□ -0.46
CCDC88B-205ENST00000472524 SLC25A17O43808 307 aa12.19□□□□□ -0.46
CCDC88B-205ENST00000472524 SPDEFO95238 335 aa12.19□□□□□ -0.46
CCDC88B-205ENST00000472524 RUNX1Q01196 453 aa12.19□□□□□ -0.46
CCDC88B-205ENST00000472524 TMEM267Q0VDI3 215 aaPredicted RBP12.19□□□□□ -0.46
CCDC88B-205ENST00000472524 ACTBL2Q562R1 376 aa12.19□□□□□ -0.46
CCDC88B-205ENST00000472524 TCTEX1D1Q8N7M0 179 aa12.19□□□□□ -0.46
CCDC88B-205ENST00000472524 FLYWCH2Q96CP2 140 aaKnown RBP12.19□□□□□ -0.46
CCDC88B-205ENST00000472524 GINS4Q9BRT9 223 aa12.19□□□□□ -0.46
CCDC88B-205ENST00000472524 TOLLIPQ9H0E2 274 aa12.19□□□□□ -0.46
CCDC88B-205ENST00000472524 TXNL4BQ9NX01 149 aaKnown RBP12.19□□□□□ -0.46
CCDC88B-205ENST00000472524 SDHAF2Q9NX18 166 aa12.19□□□□□ -0.46
CCDC88B-205ENST00000472524 ELF5Q9UKW6 265 aaPredicted RBP12.19□□□□□ -0.46
CCDC88B-205ENST00000472524 RBM7Q9Y580 266 aaKnown RBP12.19□□□□□ -0.46
CCDC88B-205ENST00000472524 NUBP2Q9Y5Y2 271 aa12.19□□□□□ -0.46
CCDC88B-205ENST00000472524 TRBV6-7A0A0A0MS04 114 aa12.18□□□□□ -0.46
CCDC88B-205ENST00000472524 DCTN2Q13561 401 aaKnown RBP12.18□□□□□ -0.46
CCDC88B-205ENST00000472524 LFNGQ8NES3 379 aa12.18□□□□□ -0.46
CCDC88B-205ENST00000472524 GRPEL2Q8TAA5 225 aa12.18□□□□□ -0.46
CCDC88B-205ENST00000472524 FCGR1BQ92637 280 aa12.18□□□□□ -0.46
CCDC88B-205ENST00000472524 ARPC1AQ92747 370 aa12.18□□□□□ -0.46
CCDC88B-205ENST00000472524 C5orf30Q96GV9 206 aa12.18□□□□□ -0.46
CCDC88B-205ENST00000472524 MS4A10Q96PG2 267 aa12.18□□□□□ -0.46
CCDC88B-205ENST00000472524 SCOCQ9UIL1 159 aa12.18□□□□□ -0.46
CCDC88B-205ENST00000472524 STUB1Q9UNE7 303 aa12.18□□□□□ -0.46
CCDC88B-205ENST00000472524 NOTOA8MTQ0 251 aa12.17□□□□□ -0.46
CCDC88B-205ENST00000472524 IGHV3-11P01762 117 aa12.17□□□□□ -0.46
CCDC88B-205ENST00000472524 SLURP1P55000 103 aa12.17□□□□□ -0.46
CCDC88B-205ENST00000472524 TPPP2P59282 170 aa12.17□□□□□ -0.46
CCDC88B-205ENST00000472524 PYHIN1Q6K0P9 492 aa12.17□□□□□ -0.46
CCDC88B-205ENST00000472524 ZNF562Q6V9R5 426 aa12.17□□□□□ -0.46
CCDC88B-205ENST00000472524 DCUN1D4Q92564 292 aa12.17□□□□□ -0.46
CCDC88B-205ENST00000472524 HARBI1Q96MB7 349 aa12.17□□□□□ -0.46
CCDC88B-205ENST00000472524 DAPK2Q9UIK4 370 aa12.17□□□□□ -0.46
CCDC88B-205ENST00000472524 SSR3Q9UNL2 185 aa12.17□□□□□ -0.46
CCDC88B-205ENST00000472524 IGHV4OR15-8A0A075B7B6 117 aa12.16□□□□□ -0.46
CCDC88B-205ENST00000472524 IGKV1D-8A0A087WSZ0 117 aa12.16□□□□□ -0.46
CCDC88B-205ENST00000472524 A0A087WW49 117 aa12.16□□□□□ -0.46
CCDC88B-205ENST00000472524 LINC01619G3V211 115 aa12.16□□□□□ -0.46
CCDC88B-205ENST00000472524 OVOL1O14753 267 aa12.16□□□□□ -0.46
CCDC88B-205ENST00000472524 ARPC1BO15143 372 aaKnown RBP12.16□□□□□ -0.46
CCDC88B-205ENST00000472524 DIRAS3O95661 229 aa12.16□□□□□ -0.46
CCDC88B-205ENST00000472524 LY86O95711 162 aa12.16□□□□□ -0.46
CCDC88B-205ENST00000472524 LGALS1P09382 135 aaKnown RBP12.16□□□□□ -0.46
CCDC88B-205ENST00000472524 FGF9P31371 208 aaPredicted RBP12.16□□□□□ -0.46
CCDC88B-205ENST00000472524 CBX3Q13185 183 aa12.16□□□□□ -0.46
CCDC88B-205ENST00000472524 FXYD3Q14802 87 aa12.16□□□□□ -0.46
CCDC88B-205ENST00000472524 CDNFQ49AH0 187 aa12.16□□□□□ -0.46
CCDC88B-205ENST00000472524 AKIRIN2Q53H80 203 aa12.16□□□□□ -0.46
CCDC88B-205ENST00000472524 BVESQ8NE79 360 aa12.16□□□□□ -0.46
CCDC88B-205ENST00000472524 RRP15Q9Y3B9 282 aaKnown RBP12.16□□□□□ -0.46
CCDC88B-205ENST00000472524 J3QRK9 145 aa12.15□□□□□ -0.46
CCDC88B-205ENST00000472524 SHOXO15266 292 aa12.15□□□□□ -0.46
CCDC88B-205ENST00000472524 CNIH1O95406 144 aa12.15□□□□□ -0.46
CCDC88B-205ENST00000472524 IGLV2-23P01705 113 aa12.15□□□□□ -0.46
CCDC88B-205ENST00000472524 DTYMKP23919 212 aa12.15□□□□□ -0.46
CCDC88B-205ENST00000472524 CD40LGP29965 261 aa12.15□□□□□ -0.46
CCDC88B-205ENST00000472524 PJVKQ0ZLH3 352 aa12.15□□□□□ -0.46
CCDC88B-205ENST00000472524 ARL6IP1Q15041 203 aa12.15□□□□□ -0.46
CCDC88B-205ENST00000472524 RTL8BQ17RB0 113 aa12.15□□□□□ -0.46
CCDC88B-205ENST00000472524 ZNF773Q6PK81 442 aa12.15□□□□□ -0.46
CCDC88B-205ENST00000472524 H1FOOQ8IZA3 346 aaPredicted RBP12.15□□□□□ -0.46
CCDC88B-205ENST00000472524 LGALS14Q8TCE9 139 aa12.15□□□□□ -0.46
CCDC88B-205ENST00000472524 DLX4Q92988 240 aaPredicted RBP12.15□□□□□ -0.46
CCDC88B-205ENST00000472524 ST6GALNAC5Q9BVH7 336 aa12.15□□□□□ -0.46
CCDC88B-205ENST00000472524 YTHDF1Q9BYJ9 559 aaKnown RBP12.15□□□□□ -0.46
CCDC88B-205ENST00000472524 OR51E2Q9H255 320 aa12.15□□□□□ -0.46
CCDC88B-205ENST00000472524 ZNF355PQ9NSJ1 428 aa12.15□□□□□ -0.46
CCDC88B-205ENST00000472524 TMEM235A6NFC5 223 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms