RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 ZNF714Q96N38 554 aa12.62□□□□□ -0.39
PTPRU-205ENST00000460170 IL19Q9UHD0 177 aa12.62□□□□□ -0.39
PTPRU-205ENST00000460170 CACNA1DQ01668 2161 aa12.62□□□□□ -0.39
PTPRU-205ENST00000460170 NCOR1O75376 2440 aa12.62□□□□□ -0.39
PTPRU-205ENST00000460170 OR4A8P0C604 315 aa12.61□□□□□ -0.39
PTPRU-205ENST00000460170 OR1L6Q8NGR2 347 aa12.61□□□□□ -0.39
PTPRU-205ENST00000460170 TXNDC17Q9BRA2 123 aa12.61□□□□□ -0.39
PTPRU-205ENST00000460170 MESP1Q9BRJ9 268 aa12.61□□□□□ -0.39
PTPRU-205ENST00000460170 CALYQ9NYX4 217 aa12.61□□□□□ -0.39
PTPRU-205ENST00000460170 IGKV1-9A0A0C4DH69 117 aa12.61□□□□□ -0.39
PTPRU-205ENST00000460170 MARCH11A6NNE9 402 aa12.61□□□□□ -0.39
PTPRU-205ENST00000460170 S100A4P26447 101 aaKnown RBP12.61□□□□□ -0.39
PTPRU-205ENST00000460170 FAM3BP58499 235 aaPredicted RBP12.61□□□□□ -0.39
PTPRU-205ENST00000460170 REPIN1Q9BWE0 567 aaKnown RBP12.61□□□□□ -0.39
PTPRU-205ENST00000460170 HEXA-AS1Q9H8Q6 139 aa12.61□□□□□ -0.39
PTPRU-205ENST00000460170 GNG7O60262 68 aa12.61□□□□□ -0.39
PTPRU-205ENST00000460170 GLIPR1P48060 266 aa12.61□□□□□ -0.39
PTPRU-205ENST00000460170 MRPL54Q6P161 138 aaKnown RBP12.61□□□□□ -0.39
PTPRU-205ENST00000460170 TMEM204Q9BSN7 226 aa12.61□□□□□ -0.39
PTPRU-205ENST00000460170 SPTBN2O15020 2390 aa12.61□□□□□ -0.39
PTPRU-205ENST00000460170 LY6G6FQ5SQ64 297 aa12.61□□□□□ -0.39
PTPRU-205ENST00000460170 Q6ZT83 130 aa12.61□□□□□ -0.39
PTPRU-205ENST00000460170 PAQR4Q8N4S7 273 aaPredicted RBP12.61□□□□□ -0.39
PTPRU-205ENST00000460170 PRSS3P2Q8NHM4 247 aa12.61□□□□□ -0.39
PTPRU-205ENST00000460170 FGF11Q92914 225 aa12.61□□□□□ -0.39
PTPRU-205ENST00000460170 RASL11BQ9BPW5 248 aa12.61□□□□□ -0.39
PTPRU-205ENST00000460170 ASCL3Q9NQ33 180 aa12.61□□□□□ -0.39
PTPRU-205ENST00000460170 S1PR2O95136 353 aa12.6□□□□□ -0.39
PTPRU-205ENST00000460170 NDUFB4O95168 129 aa12.6□□□□□ -0.39
PTPRU-205ENST00000460170 MDKP21741 143 aaPredicted RBP12.6□□□□□ -0.39
PTPRU-205ENST00000460170 CCL1P22362 96 aa12.6□□□□□ -0.39
PTPRU-205ENST00000460170 C17orf82Q86X59 251 aaPredicted RBP12.6□□□□□ -0.39
PTPRU-205ENST00000460170 SRD5A3Q9H8P0 318 aa12.6□□□□□ -0.39
PTPRU-205ENST00000460170 PLSCR2Q9NRY7 297 aa12.6□□□□□ -0.39
PTPRU-205ENST00000460170 ZG16O60844 167 aa12.6□□□□□ -0.39
PTPRU-205ENST00000460170 RAB24Q969Q5 203 aa12.6□□□□□ -0.39
PTPRU-205ENST00000460170 A0A087X0M5 115 aa12.6□□□□□ -0.39
PTPRU-205ENST00000460170 A0A1B0GX30 115 aa12.6□□□□□ -0.39
PTPRU-205ENST00000460170 SNURFLB1AK76 121 aa12.6□□□□□ -0.39
PTPRU-205ENST00000460170 IER3P46695 156 aa12.6□□□□□ -0.39
PTPRU-205ENST00000460170 GAMTQ14353 236 aa12.6□□□□□ -0.39
PTPRU-205ENST00000460170 OR10S1Q8NGN2 331 aa12.6□□□□□ -0.39
PTPRU-205ENST00000460170 ZNF319Q9P2F9 582 aa12.6□□□□□ -0.39
PTPRU-205ENST00000460170 TSC2P49815 1807 aa12.6□□□□□ -0.39
PTPRU-205ENST00000460170 MGAMO43451 1857 aa12.6□□□□□ -0.39
PTPRU-205ENST00000460170 TRGC2P03986 189 aa12.6□□□□□ -0.39
PTPRU-205ENST00000460170 ZNF735P0CB33 412 aa12.6□□□□□ -0.39
PTPRU-205ENST00000460170 FCER1GP30273 86 aa12.6□□□□□ -0.39
PTPRU-205ENST00000460170 OR10J1P30954 320 aa12.6□□□□□ -0.39
PTPRU-205ENST00000460170 JPT1Q9UK76 154 aa12.6□□□□□ -0.39
PTPRU-205ENST00000460170 CDX4O14627 284 aaPredicted RBP12.59□□□□□ -0.39
PTPRU-205ENST00000460170 UCP1P25874 307 aa12.59□□□□□ -0.39
PTPRU-205ENST00000460170 VAMP3Q15836 100 aa12.59□□□□□ -0.39
PTPRU-205ENST00000460170 IGSF23A1L1A6 192 aa12.59□□□□□ -0.39
PTPRU-205ENST00000460170 P01737 135 aa12.59□□□□□ -0.39
PTPRU-205ENST00000460170 CTSSP25774 331 aa12.59□□□□□ -0.39
PTPRU-205ENST00000460170 FAM117AQ9C073 453 aa12.59□□□□□ -0.39
PTPRU-205ENST00000460170 TMEM140Q9NV12 185 aa12.59□□□□□ -0.39
PTPRU-205ENST00000460170 ZDHHC8Q9ULC8 765 aa12.59□□□□□ -0.39
PTPRU-205ENST00000460170 MRPS18CQ9Y3D5 142 aaKnown RBP12.59□□□□□ -0.39
PTPRU-205ENST00000460170 BRS3P32247 399 aa12.59□□□□□ -0.39
PTPRU-205ENST00000460170 ZNF383Q8NA42 475 aa12.59□□□□□ -0.39
PTPRU-205ENST00000460170 FAM131CQ96AQ9 280 aa12.59□□□□□ -0.39
PTPRU-205ENST00000460170 PRR19A6NJB7 356 aa12.58□□□□□ -0.39
PTPRU-205ENST00000460170 APELAP0DMC3 54 aa12.58□□□□□ -0.39
PTPRU-205ENST00000460170 COL8A1P27658 744 aa12.58□□□□□ -0.39
PTPRU-205ENST00000460170 WNT5AP41221 380 aa12.58□□□□□ -0.39
PTPRU-205ENST00000460170 SLC35E4Q6ICL7 350 aa12.58□□□□□ -0.39
PTPRU-205ENST00000460170 FAM89BQ8N5H3 189 aa12.58□□□□□ -0.39
PTPRU-205ENST00000460170 CISD1Q9NZ45 108 aaKnown RBP12.58□□□□□ -0.39
PTPRU-205ENST00000460170 C1RLQ9NZP8 487 aa12.58□□□□□ -0.39
PTPRU-205ENST00000460170 HSPE1P61604 102 aaKnown RBP12.58□□□□□ -0.4
PTPRU-205ENST00000460170 MIC13Q5XKP0 118 aa12.58□□□□□ -0.4
PTPRU-205ENST00000460170 FAM216AQ8WUB2 273 aa12.58□□□□□ -0.4
PTPRU-205ENST00000460170 FNDC1Q4ZHG4 1894 aaPredicted RBP12.58□□□□□ -0.4
PTPRU-205ENST00000460170 CXorf65A6NEN9 183 aa12.58□□□□□ -0.4
PTPRU-205ENST00000460170 RHBDL1O75783 438 aa12.58□□□□□ -0.4
PTPRU-205ENST00000460170 CD81P60033 236 aa12.58□□□□□ -0.4
PTPRU-205ENST00000460170 MMDQ15546 238 aa12.58□□□□□ -0.4
PTPRU-205ENST00000460170 OR5AU1Q8NGC0 362 aa12.58□□□□□ -0.4
PTPRU-205ENST00000460170 LYZL4Q96KX0 146 aa12.58□□□□□ -0.4
PTPRU-205ENST00000460170 IL36RNQ9UBH0 155 aa12.58□□□□□ -0.4
PTPRU-205ENST00000460170 CARHSP1Q9Y2V2 147 aaKnown RBP12.58□□□□□ -0.4
PTPRU-205ENST00000460170 EFNA2O43921 213 aa12.58□□□□□ -0.4
PTPRU-205ENST00000460170 ABLIM2Q6H8Q1 611 aa12.58□□□□□ -0.4
PTPRU-205ENST00000460170 LRP11Q86VZ4 500 aa12.58□□□□□ -0.4
PTPRU-205ENST00000460170 KLHDC3Q9BQ90 382 aa12.58□□□□□ -0.4
PTPRU-205ENST00000460170 PAXXQ9BUH6 204 aa12.58□□□□□ -0.4
PTPRU-205ENST00000460170 M0QZ24 198 aa12.57□□□□□ -0.4
PTPRU-205ENST00000460170 MC5RP33032 325 aa12.57□□□□□ -0.4
PTPRU-205ENST00000460170 RTP5Q14D33 572 aa12.57□□□□□ -0.4
PTPRU-205ENST00000460170 NHLRC2Q8NBF2 726 aa12.57□□□□□ -0.4
PTPRU-205ENST00000460170 FDCSPQ8NFU4 85 aa12.57□□□□□ -0.4
PTPRU-205ENST00000460170 PSMG3Q9BT73 122 aaPredicted RBP12.57□□□□□ -0.4
PTPRU-205ENST00000460170 RNF126Q9BV68 326 aa12.57□□□□□ -0.4
PTPRU-205ENST00000460170 TCF20Q9UGU0 1960 aaKnown RBP12.57□□□□□ -0.4
PTPRU-205ENST00000460170 HIST1H1EP10412 219 aaKnown RBP12.57□□□□□ -0.4
PTPRU-205ENST00000460170 MPZP25189 248 aa12.57□□□□□ -0.4
PTPRU-205ENST00000460170 SSTR5P35346 364 aa12.57□□□□□ -0.4
PTPRU-205ENST00000460170 Q8WTZ3 238 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms